Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0017606

Physical Location & Seq

Genomic Coordinates Forward (+)

22408736 .. 22410727

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGATGGAGAGCTTCTGCTCCAATGGGCTTGTTCCGAATGAGCTGCTCTGCTCTCTTGGGCATGTTCTGCTGGCTGAGGCTGCCAAGTCTATTGCTTTCTCTTGCGTGCTGATGGGATCTCTACCTAACATGCCCTATGTTTTGCCCAAAGAACCTGACACAGTCACAGGGTTCCCTATCACTGATCTCTACGCTCTGATGAAACCTGGTTCTGAGAACACAGATGCAAGCGAAACTGACGATGACGAAGACGGTGATGAGGATGGAGGTGATGACCAGGATGAGGAAGCAGGAGATGAGGAGGACGCCTCTGGGGACGAAGTTGAGGGCAAAGGAGATCCAGAAGATGTGCCTGCGGCCAATGGTGATGGTGATGGTGCCGGTGAAGAGGAAGATGATGATGATGAGGAGGAGAAAGACGATGACGAGGACGACGACGATGACGATGACGATGACGGTGACGACGATGGGGATGAAGAGACAGAAGATGATGAGGAAGATGAGGAAGATGAGGAGGATGAGGATGACATACCCCAGCCACCTGCCAAGAGGAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.19

Weight (kDa)

4.05

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28660
malus_domestica	MD08G1151900.v1.1 MD15G1129000.v1.1
prunus_persica	Prupe.1G484300_v2.0.a1
pyrus_communis	pycom08g13000 pycom15g11610
rosa_chinensis	RchiOBHm_Chr6g0297441
rosa_laevigata	RLG00000011598
rosa_multiflora	Rmu_sc0004323.1_g000006
rosa_roxburghii	Rroxscaffold_7G00170500
rosa_rugosa	Rorug06G0272100
rosa_wichuraiana	Rw6G033370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	553
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	380
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	2 cut(s)	127, 335
AcoI	YGGCCR	1 cut(s)	360
AcyI	GRCGYC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	208, 279
AluBI	AGCT	2 cut(s)	15, 46
AluI	AGCT	2 cut(s)	15, 46
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	127, 335
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	2 cut(s)	46, 83
AsuHPI	GGTGA	6 cut(s)	269, 284, 380, 386, 398, 473
BanI	GGYRCC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	33, 70
BccI	CCATC	5 cut(s)	109, 260, 365, 371, 464
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	210, 281
BcoDI	GTCTC	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	3 cut(s)	47, 84, 360
BlsI	GCNGC	3 cut(s)	48, 85, 361
Bme1390I	CCNGG	2 cut(s)	210, 281
BmiI	GGNNCC	2 cut(s)	176, 382
BmrFI	CCNGG	2 cut(s)	210, 281
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu10I	CCTNAGC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	210, 281
BseGI	GGATG	5 cut(s)	271, 289, 481, 526, 532
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	69, 207
BseRI	GAGGAG	4 cut(s)	317, 425, 428, 530
BseXI	GCAGC	2 cut(s)	33, 70
BseYI	CCCAGC	1 cut(s)	537
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	362
Bsp143I	GATC	3 cut(s)	119, 187, 340
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	2 cut(s)	70, 208
BspLI	GGNNCC	2 cut(s)	176, 382
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	2 cut(s)	127, 335
BspT107I	GGYRCC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssMI	GATC	3 cut(s)	119, 187, 340
BssNI	GRCGYC	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	210, 281
Bst4CI	ACNGT	3 cut(s)	166, 257, 461
Bst6I	CTCTTC	2 cut(s)	384, 474
BstACI	GRCGYC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstC8I	GCNNGC	4 cut(s)	75, 110, 232, 357
BstDEI	CTNAG	2 cut(s)	78, 216
BstF5I	GGATG	5 cut(s)	271, 289, 481, 526, 532
BstKTI	GATC	3 cut(s)	122, 190, 343
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	3 cut(s)	119, 187, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 83
BstNI	CCWGG	2 cut(s)	210, 281
BstNSI	RCATGY	2 cut(s)	68, 136
BstSCI	CCNGG	2 cut(s)	208, 279
BstV1I	GCAGC	2 cut(s)	33, 70
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	119, 340
BstYI	RGATCY	2 cut(s)	119, 340
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	5 cut(s)	271, 289, 481, 526, 532
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	4 cut(s)	75, 110, 232, 357
Cfr10I	RCCGGY	1 cut(s)	383
CseI	GACGC	1 cut(s)	317
CsiI	ACCWGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	65, 133
CviJI	RGCY	7 cut(s)	15, 31, 46, 77, 83, 362, 541
CviKI_1	RGCY	7 cut(s)	15, 31, 46, 77, 83, 362, 541
DdeI	CTNAG	2 cut(s)	78, 216
DpnI	GATC	3 cut(s)	121, 189, 342
DpnII	GATC	3 cut(s)	119, 187, 340
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	2 cut(s)	384, 474
EarI	CTCTTC	2 cut(s)	384, 474
EcoRII	CCWGG	2 cut(s)	208, 279
FaeI	CATG	2 cut(s)	68, 136
FaiI	YATR	4 cut(s)	66, 134, 141, 533
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	64, 132
Fnu4HI	GCNGC	3 cut(s)	47, 84, 360
FokI	GGATG	5 cut(s)	278, 296, 488, 533, 539
Fsp4HI	GCNGC	3 cut(s)	47, 84, 360
GluI	GCNGC	3 cut(s)	47, 84, 360
GsaI	CCCAGC	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	384
HgaI	GACGC	1 cut(s)	317
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	68, 136
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	6 cut(s)	269, 284, 380, 386, 398, 473
Hpy188I	TCNGA	3 cut(s)	39, 201, 217
Hpy188III	TCNNGA	1 cut(s)	344
Hpy99I	CGWCG	3 cut(s)	440, 443, 470
HpyCH4III	ACNGT	3 cut(s)	166, 257, 461
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 83
HpyF3I	CTNAG	2 cut(s)	78, 216
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	68, 136
Kzo9I	GATC	3 cut(s)	119, 187, 340
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	2 cut(s)	33, 70
LweI	GCATC	1 cut(s)	217
MabI	ACCWGGT	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	166, 461
MalI	GATC	3 cut(s)	121, 189, 342
MboI	GATC	3 cut(s)	119, 187, 340
MboII	GAAGA	8 cut(s)	263, 359, 401, 407, 491, 500, 512, 521
MflI	RGATCY	2 cut(s)	119, 340
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	2 cut(s)	210, 281
MvaI	CCWGG	2 cut(s)	210, 281
MwoI	GCNNNNNNNGC	2 cut(s)	70, 83
NdeII	GATC	3 cut(s)	119, 187, 340
NlaIII	CATG	2 cut(s)	68, 136
NlaIV	GGNNCC	2 cut(s)	176, 382
NmuCI	GTSAC	2 cut(s)	166, 461
NspI	RCATGY	2 cut(s)	68, 136
PaqCI	CACCTGC	1 cut(s)	553
PcsI	WCGNNNNNNNCGW	3 cut(s)	435, 444, 465
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	48, 85, 361
Psp6I	CCWGG	2 cut(s)	208, 279
PspFI	CCCAGC	1 cut(s)	537
PspGI	CCWGG	2 cut(s)	208, 279
PspN4I	GGNNCC	2 cut(s)	176, 382
PsuI	RGATCY	2 cut(s)	119, 340
PsyI	GACNNNGTC	1 cut(s)	164
SatI	GCNGC	3 cut(s)	47, 84, 360
Sau3AI	GATC	3 cut(s)	119, 187, 340
ScrFI	CCNGG	2 cut(s)	210, 281
SetI	ASST	7 cut(s)	17, 48, 130, 160, 211, 274, 547
SexAI	ACCWGGT	1 cut(s)	208
SfaNI	GCATC	1 cut(s)	217
SsiI	CCGC	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	208, 279
TaaI	ACNGT	3 cut(s)	166, 257, 461
TauI	GCSGC	1 cut(s)	362
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	166, 461
TseI	GCWGC	2 cut(s)	46, 83
Tsp45I	GTSAC	2 cut(s)	166, 461
TspDTI	ATGAA	2 cut(s)	218, 492
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	164
XceI	RCATGY	2 cut(s)	68, 136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.