Rmu_sc0004323.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004323.1
OG0017606
Physical Location & Seq
Forward (+)
25407 .. 27057
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004323.1_g000006.1.cds

Sequence Viewer

Length: 543 bp
atggagagcttctgctccaatgggtttgttctaaatgagttgctctgctctgttgggcaggttctggtggctgaggctgccaagtctattgctttctctttcttgctgatgggatcgctacctaacagcccctatgttttgcccaaaccttccacagtcacagggttccctatcactgatctttatgctgtgacgaaacctggttctgagaacaaagatgcaagtgaaactgaggacgatgaagacggtgatgaggagggtggtgaggaccaggatgatgaagcaggagatgaggaggacgcctccggggatgaagttgagggcaaaggaaatccagaagatgtgcctgcggccaatggtgatggtgccagtgaagaggaagacgacgatgatgaggaggagaaggaagatgacgacgacgatgatgacgatgacgacggtgacgacgacggggatgaagagacggaagatgatgaagaggatgaggaagatgaggaggacgaggatgacataccccagccacctgctaagaggagaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.44

Weight (kDa)

4.05

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28660
malus_domestica MD08G1151900.v1.1 MD15G1129000.v1.1
prunus_persica Prupe.1G484300_v2.0.a1
pyrus_communis pycom08g13000 pycom15g11610
rosa_chinensis RchiOBHm_Chr6g0297441
rosa_laevigata RLG00000011598
rosa_multiflora Rmu_sc0004323.1_g000006
rosa_roxburghii Rroxscaffold_7G00170500
rosa_rugosa Rorug06G0272100
rosa_wichuraiana Rw6G033370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 532
Acc36I ACCTGC 2 cut(s) 49, 532
AccB1I GGYRCC 1 cut(s) 365
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 300
AjnI CCWGG 2 cut(s) 199, 270
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 64
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 4 cut(s) 260, 275, 371, 452
AvaII GGWCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 365
BbsI GAAGAC 2 cut(s) 249, 387
BbvCI CCTCAGC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 103, 356
BciT130I CCWGG 2 cut(s) 201, 272
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 455
BfuAI ACCTGC 2 cut(s) 49, 532
BisI GCNGC 2 cut(s) 78, 351
BlsI GCNGC 2 cut(s) 79, 352
Bme1390I CCNGG 3 cut(s) 201, 272, 307
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 167, 367
BmrFI CCNGG 3 cut(s) 201, 272, 307
BmsI GCATC 1 cut(s) 208
BpiI GAAGAC 2 cut(s) 249, 387
BplI GAGNNNNNCTC 2 cut(s) 287, 319
Bpu10I CCTNAGC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 201, 272
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 5 cut(s) 280, 316, 460, 487, 511
BseMII CTCAG 3 cut(s) 63, 198, 222
BseNI ACTGG 1 cut(s) 369
BseRI GAGGAG 5 cut(s) 269, 308, 410, 413, 509
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 516
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 455
BsmBI CGTCTC 1 cut(s) 455
BsnI GGCC 1 cut(s) 353
Bsp143I GATC 2 cut(s) 113, 178
BspACI CCGC 1 cut(s) 350
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 3 cut(s) 64, 199, 223
BspLI GGNNCC 2 cut(s) 167, 367
BspMI ACCTGC 2 cut(s) 49, 532
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 2 cut(s) 113, 178
BssNI GRCGYC 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 201, 272
Bst4CI ACNGT 3 cut(s) 157, 248, 440
Bst6I CTCTTC 3 cut(s) 369, 453, 471
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 4 cut(s) 72, 207, 231, 528
BstF5I GGATG 5 cut(s) 280, 316, 460, 487, 511
BstKTI GATC 2 cut(s) 116, 181
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 113, 178
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 2 cut(s) 201, 272
BstSCI CCNGG 3 cut(s) 199, 270, 305
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 2 cut(s) 249, 387
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 5 cut(s) 280, 316, 460, 487, 511
BtsIMutI CAGTG 2 cut(s) 174, 376
BveI ACCTGC 2 cut(s) 49, 532
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 1 cut(s) 308
CsiI ACCWGGT 1 cut(s) 199
CviJI RGCY 6 cut(s) 9, 71, 77, 129, 353, 520
CviKI_1 RGCY 6 cut(s) 9, 71, 77, 129, 353, 520
DdeI CTNAG 4 cut(s) 72, 207, 231, 528
DpnI GATC 2 cut(s) 115, 180
DpnII GATC 2 cut(s) 113, 178
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 3 cut(s) 369, 453, 471
EarI CTCTTC 3 cut(s) 369, 453, 471
Eco47I GGWCC 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 199, 270
Esp3I CGTCTC 1 cut(s) 455
FaiI YATR 3 cut(s) 135, 186, 512
Fnu4HI GCNGC 2 cut(s) 78, 351
FokI GGATG 5 cut(s) 287, 323, 467, 494, 518
Fsp4HI GCNGC 2 cut(s) 78, 351
GluI GCNGC 2 cut(s) 78, 351
GsaI CCCAGC 1 cut(s) 520
HaeIII GGCC 1 cut(s) 353
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 308
Hin1I GRCGYC 1 cut(s) 300
HpaII CCGG 1 cut(s) 306
HphI GGTGA 4 cut(s) 260, 275, 371, 452
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 335
Hpy99I CGWCG 6 cut(s) 389, 419, 422, 440, 449, 452
HpyAV CCTTC 2 cut(s) 159, 397
HpyCH4III ACNGT 3 cut(s) 157, 248, 440
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 4 cut(s) 72, 207, 231, 528
Hsp92I GRCGYC 1 cut(s) 300
Kzo9I GATC 2 cut(s) 113, 178
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 208
MabI ACCWGGT 1 cut(s) 199
MaeIII GTNAC 3 cut(s) 157, 190, 440
MalI GATC 2 cut(s) 115, 180
MboI GATC 2 cut(s) 113, 178
MboII GAAGA 9 cut(s) 254, 350, 386, 392, 419, 470, 479, 488, 500
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 3 cut(s) 201, 272, 307
MvaI CCWGG 2 cut(s) 201, 272
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 1 cut(s) 307
NdeII GATC 2 cut(s) 113, 178
NlaIV GGNNCC 2 cut(s) 167, 367
NmuCI GTSAC 3 cut(s) 157, 190, 440
PaqCI CACCTGC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 3 cut(s) 426, 441, 444
PkrI GCNGC 2 cut(s) 79, 352
Psp6I CCWGG 2 cut(s) 199, 270
PspFI CCCAGC 1 cut(s) 516
PspGI CCWGG 2 cut(s) 199, 270
PspN4I GGNNCC 2 cut(s) 167, 367
PspPI GGNCC 1 cut(s) 268
PstNI CAGNNNCTG 1 cut(s) 64
SatI GCNGC 2 cut(s) 78, 351
Sau3AI GATC 2 cut(s) 113, 178
Sau96I GGNCC 1 cut(s) 268
ScrFI CCNGG 3 cut(s) 201, 272, 307
SetI ASST 6 cut(s) 11, 63, 124, 151, 202, 526
SexAI ACCWGGT 1 cut(s) 199
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 268
SsiI CCGC 1 cut(s) 350
StyD4I CCNGG 3 cut(s) 199, 270, 305
TaaI ACNGT 3 cut(s) 157, 248, 440
TauI GCSGC 1 cut(s) 353
TscAI CASTG 2 cut(s) 181, 376
TseFI GTSAC 3 cut(s) 157, 190, 440
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 3 cut(s) 157, 190, 440
TspDTI ATGAA 5 cut(s) 255, 294, 327, 471, 489
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 2 cut(s) 181, 376
VpaK11BI GGWCC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.