Rroxscaffold_7G00170500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017606
Physical Location & Seq
Reverse (-)
10946676 .. 10948652
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170500.1

Sequence Viewer

Length: 552 bp
ATGGAGATGGAGAGCTTCTGCTCCAATGGGTTTGTTCTGAATGAGTTGCTCTGCTCTGTTGGGCAGGTTCTGGTGGATGAGGCTGCCAAGTCTATTGCTTTCTCTTTCTTGCTGATGGGATCTCTACCTAACAGCGCCTATGTTTTGCCCAAAGAACCTTACACAGTCACAGGTTTCCCTATCACCAATCTTTATGCTGTAACGAAACCTGGTTCTGAGAACAAAGATGCAAGTGAAACTGAGGACGATGAAGACGGTGATGAGGAGGGTGGTGAGGACCAGGATGATGAAGCAGGAGATGAAGAGGACGCCTCTGGGGACGAAGTTGAGGGTAAAGGAGATCCAGAAGATGTGCCTGCGGCCAATGGTGATGGCGCCAGCGAAGAGGAAGACGATGATGATGAGGAGGAGAAGGAAGACGACGAAGACGACGATGATGATGATGACGGTGACGATGATGGGGATGAAGAGACGGAAGATGATGAAGAGGATGAGGAAGATGAGGAGGACGAGGATGACATACCCCAGCCACCTGCCAAGAGGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.94

Weight (kDa)

4.05

Isoelectric Point (pI)

60.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28660
malus_domestica MD08G1151900.v1.1 MD15G1129000.v1.1
prunus_persica Prupe.1G484300_v2.0.a1
pyrus_communis pycom08g13000 pycom15g11610
rosa_chinensis RchiOBHm_Chr6g0297441
rosa_laevigata RLG00000011598
rosa_multiflora Rmu_sc0004323.1_g000006
rosa_roxburghii Rroxscaffold_7G00170500
rosa_rugosa Rorug06G0272100
rosa_wichuraiana Rw6G033370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 2 cut(s) 55, 541
AccB1I GGYRCC 1 cut(s) 374
AciI CCGC 1 cut(s) 359
AclWI GGATC 2 cut(s) 127, 335
AcoI YGGCCR 1 cut(s) 360
AcyI GRCGYC 2 cut(s) 309, 375
AjnI CCWGG 2 cut(s) 208, 279
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 127, 335
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 83
AspLEI GCGC 2 cut(s) 137, 377
AspS9I GGNCC 1 cut(s) 277
AsuHPI GGTGA 5 cut(s) 175, 269, 284, 380, 461
AvaII GGWCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 374
BbsI GAAGAC 4 cut(s) 258, 396, 423, 432
BbvI GCAGC 1 cut(s) 70
BccI CCATC 3 cut(s) 109, 365, 452
BciT130I CCWGG 2 cut(s) 210, 281
BcoDI GTCTC 1 cut(s) 464
BfoI RGCGCY 2 cut(s) 138, 378
BfuAI ACCTGC 2 cut(s) 55, 541
BisI GCNGC 2 cut(s) 84, 360
BlsI GCNGC 2 cut(s) 85, 361
Bme1390I CCNGG 2 cut(s) 210, 281
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 2 cut(s) 210, 281
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 4 cut(s) 258, 396, 423, 432
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BsaHI GRCGYC 2 cut(s) 309, 375
BseBI CCWGG 2 cut(s) 210, 281
BseGI GGATG 5 cut(s) 82, 289, 469, 496, 520
BseMII CTCAG 2 cut(s) 207, 231
BseRI GAGGAG 4 cut(s) 278, 419, 422, 518
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 525
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 374
BslFI GGGAC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 464
BsmBI CGTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 362
Bsp143I GATC 2 cut(s) 119, 340
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 208, 232
BspLI GGNNCC 1 cut(s) 376
BspMI ACCTGC 2 cut(s) 55, 541
BspPI GGATC 2 cut(s) 127, 335
BspT107I GGYRCC 1 cut(s) 374
BssMI GATC 2 cut(s) 119, 340
BssNI GRCGYC 2 cut(s) 309, 375
Bst2UI CCWGG 2 cut(s) 210, 281
Bst4CI ACNGT 3 cut(s) 166, 257, 449
Bst6I CTCTTC 4 cut(s) 297, 378, 462, 480
BstACI GRCGYC 2 cut(s) 309, 375
BstC8I GCNNGC 2 cut(s) 357, 379
BstDEI CTNAG 2 cut(s) 216, 240
BstF5I GGATG 5 cut(s) 82, 289, 469, 496, 520
BstH2I RGCGCY 2 cut(s) 138, 378
BstHHI GCGC 2 cut(s) 137, 377
BstKTI GATC 2 cut(s) 122, 343
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 2 cut(s) 119, 340
BstNI CCWGG 2 cut(s) 210, 281
BstSCI CCNGG 2 cut(s) 208, 279
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 4 cut(s) 258, 396, 423, 432
BstX2I RGATCY 2 cut(s) 119, 340
BstYI RGATCY 2 cut(s) 119, 340
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 5 cut(s) 82, 289, 469, 496, 520
BveI ACCTGC 2 cut(s) 55, 541
Cac8I GCNNGC 2 cut(s) 357, 379
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 2 cut(s) 137, 377
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 1 cut(s) 317
CsiI ACCWGGT 1 cut(s) 208
CviJI RGCY 4 cut(s) 15, 83, 362, 529
CviKI_1 RGCY 4 cut(s) 15, 83, 362, 529
DdeI CTNAG 2 cut(s) 216, 240
DinI GGCGCC 1 cut(s) 376
DpnI GATC 2 cut(s) 121, 342
DpnII GATC 2 cut(s) 119, 340
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 4 cut(s) 297, 378, 462, 480
EarI CTCTTC 4 cut(s) 297, 378, 462, 480
Eco47I GGWCC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 208, 279
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 464
FaiI YATR 3 cut(s) 141, 195, 521
FaqI GGGAC 1 cut(s) 332
Fnu4HI GCNGC 2 cut(s) 84, 360
FokI GGATG 5 cut(s) 89, 296, 476, 503, 527
Fsp4HI GCNGC 2 cut(s) 84, 360
GlaI GCGC 2 cut(s) 136, 376
GluI GCNGC 2 cut(s) 84, 360
GsaI CCCAGC 1 cut(s) 529
HaeII RGCGCY 2 cut(s) 138, 378
HaeIII GGCC 1 cut(s) 362
HgaI GACGC 1 cut(s) 317
HhaI GCGC 2 cut(s) 137, 377
Hin1I GRCGYC 2 cut(s) 309, 375
Hin6I GCGC 2 cut(s) 135, 375
HinP1I GCGC 2 cut(s) 135, 375
HphI GGTGA 5 cut(s) 175, 269, 284, 380, 461
Hpy188I TCNGA 2 cut(s) 39, 217
Hpy188III TCNNGA 1 cut(s) 344
Hpy99I CGWCG 2 cut(s) 425, 434
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 3 cut(s) 166, 257, 449
HpyCH4V TGCA 1 cut(s) 230
HpyF3I CTNAG 2 cut(s) 216, 240
Hsp92I GRCGYC 2 cut(s) 309, 375
HspAI GCGC 2 cut(s) 135, 375
KasI GGCGCC 1 cut(s) 374
Kzo9I GATC 2 cut(s) 119, 340
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 217
MabI ACCWGGT 1 cut(s) 208
MaeIII GTNAC 3 cut(s) 166, 199, 449
MalI GATC 2 cut(s) 121, 342
MboI GATC 2 cut(s) 119, 340
MflI RGATCY 2 cut(s) 119, 340
Mly113I GGCGCC 1 cut(s) 375
MspR9I CCNGG 2 cut(s) 210, 281
MvaI CCWGG 2 cut(s) 210, 281
NarI GGCGCC 1 cut(s) 375
NdeII GATC 2 cut(s) 119, 340
NlaIV GGNNCC 1 cut(s) 376
NmuCI GTSAC 2 cut(s) 166, 449
PaqCI CACCTGC 1 cut(s) 541
PcsI WCGNNNNNNNCGW 2 cut(s) 426, 429
PkrI GCNGC 2 cut(s) 85, 361
PluTI GGCGCC 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 208, 279
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 2 cut(s) 208, 279
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 119, 340
SatI GCNGC 2 cut(s) 84, 360
Sau3AI GATC 2 cut(s) 119, 340
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 2 cut(s) 210, 281
SetI ASST 7 cut(s) 17, 69, 130, 160, 175, 211, 535
SexAI ACCWGGT 1 cut(s) 208
SfaNI GCATC 1 cut(s) 217
SfoI GGCGCC 1 cut(s) 376
SinI GGWCC 1 cut(s) 277
SsiI CCGC 1 cut(s) 359
SspDI GGCGCC 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 208, 279
TaaI ACNGT 3 cut(s) 166, 257, 449
TauI GCSGC 1 cut(s) 362
TseFI GTSAC 2 cut(s) 166, 449
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 2 cut(s) 166, 449
TspDTI ATGAA 5 cut(s) 264, 303, 315, 480, 498
TspGWI ACGGA 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.