RchiOBHm_Chr6g0297441

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017606
Physical Location & Seq
Forward (+)
59149847 .. 59151899
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26696

Sequence Viewer

Length: 546 bp
ATGGAGATGGAGAGCTTCTGCTCCAATGGGTTTGTTCTGAATGAGTTGCTCTGCTCTGTTGGGCAGGTTCTGGTGGCTGAGGCTGCCAAGTCTATTGCTTTCTCTTTCTTGCTGATGGGATCTCTACCTAACAGCGCCTATGTTTTGCCCAAACCTTCCACAGTCACAGGGTTCCCTATCACTGATCTTTATGCTGTGACGAAACCTGGTTCTGAGAACAAAGATGCAAGTGAAACTGAGGACGATGAAGACGGTGATGAGGAGGGTGGTGAGGACCAGGATGATGAAGCAGGAGATGAGGAGGACGCCTCTGGGGACGAAGTTGAGGGCAAAGGAGATCCAGAAGATGTGCCTGCGGCCAATGGTGATGGTGCCAGTGAAGAGGAAGACGATGATGATGAGGAGGAGAAGGAAGATGACGACGACGACGACGATGACGATGGTGACGACGATGGGGATGAAGAGACGGAAGATGATGAAGAGGATGAGGAAGATGAGGAGGACGAGGATGACATACCCCAGCCACCTGCCAAGAGGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.56

Weight (kDa)

4.05

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28660
malus_domestica MD08G1151900.v1.1 MD15G1129000.v1.1
prunus_persica Prupe.1G484300_v2.0.a1
pyrus_communis pycom08g13000 pycom15g11610
rosa_chinensis RchiOBHm_Chr6g0297441
rosa_laevigata RLG00000011598
rosa_multiflora Rmu_sc0004323.1_g000006
rosa_roxburghii Rroxscaffold_7G00170500
rosa_rugosa Rorug06G0272100
rosa_wichuraiana Rw6G033370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 2 cut(s) 55, 535
AccB1I GGYRCC 1 cut(s) 371
AciI CCGC 1 cut(s) 356
AclWI GGATC 2 cut(s) 127, 332
AcoI YGGCCR 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 306
AjnI CCWGG 2 cut(s) 205, 276
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 2 cut(s) 127, 332
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 4 cut(s) 266, 281, 377, 455
AvaII GGWCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 255, 393
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 70
BccI CCATC 4 cut(s) 109, 362, 434, 446
BciT130I CCWGG 2 cut(s) 207, 278
BcoDI GTCTC 1 cut(s) 458
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 2 cut(s) 55, 535
BisI GCNGC 2 cut(s) 84, 357
BlsI GCNGC 2 cut(s) 85, 358
Bme1390I CCNGG 2 cut(s) 207, 278
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 173, 373
BmrFI CCNGG 2 cut(s) 207, 278
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 2 cut(s) 255, 393
BplI GAGNNNNNCTC 2 cut(s) 293, 325
Bpu10I CCTNAGC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 375
BseBI CCWGG 2 cut(s) 207, 278
BseGI GGATG 4 cut(s) 286, 463, 490, 514
BseMII CTCAG 3 cut(s) 69, 204, 228
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 5 cut(s) 275, 314, 416, 419, 512
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 519
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 371
BslFI GGGAC 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 458
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 1 cut(s) 359
Bsp143I GATC 3 cut(s) 119, 184, 337
BspACI CCGC 1 cut(s) 356
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 3 cut(s) 70, 205, 229
BspLI GGNNCC 2 cut(s) 173, 373
BspMI ACCTGC 2 cut(s) 55, 535
BspPI GGATC 2 cut(s) 127, 332
BspT107I GGYRCC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 375
BssMI GATC 3 cut(s) 119, 184, 337
BssNI GRCGYC 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 207, 278
Bst4CI ACNGT 2 cut(s) 163, 254
Bst6I CTCTTC 3 cut(s) 375, 456, 474
BstACI GRCGYC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 78, 213, 237
BstF5I GGATG 4 cut(s) 286, 463, 490, 514
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 122, 187, 340
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 119, 184, 337
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 2 cut(s) 207, 278
BstSCI CCNGG 2 cut(s) 205, 276
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 255, 393
BstX2I RGATCY 2 cut(s) 119, 337
BstYI RGATCY 2 cut(s) 119, 337
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 4 cut(s) 286, 463, 490, 514
BtsIMutI CAGTG 2 cut(s) 180, 382
BveI ACCTGC 2 cut(s) 55, 535
Cac8I GCNNGC 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 274
CseI GACGC 1 cut(s) 314
CsiI ACCWGGT 1 cut(s) 205
CviJI RGCY 5 cut(s) 15, 77, 83, 359, 523
CviKI_1 RGCY 5 cut(s) 15, 77, 83, 359, 523
DdeI CTNAG 3 cut(s) 78, 213, 237
DpnI GATC 3 cut(s) 121, 186, 339
DpnII GATC 3 cut(s) 119, 184, 337
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 3 cut(s) 375, 456, 474
EarI CTCTTC 3 cut(s) 375, 456, 474
Eco47I GGWCC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 205, 276
Esp3I CGTCTC 1 cut(s) 458
FaiI YATR 3 cut(s) 141, 192, 515
FaqI GGGAC 1 cut(s) 329
Fnu4HI GCNGC 2 cut(s) 84, 357
FokI GGATG 4 cut(s) 293, 470, 497, 521
Fsp4HI GCNGC 2 cut(s) 84, 357
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 84, 357
GsaI CCCAGC 1 cut(s) 523
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 359
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 306
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HphI GGTGA 4 cut(s) 266, 281, 377, 455
Hpy188I TCNGA 2 cut(s) 39, 214
Hpy188III TCNNGA 1 cut(s) 341
Hpy99I CGWCG 5 cut(s) 425, 428, 431, 434, 452
HpyAV CCTTC 2 cut(s) 165, 403
HpyCH4III ACNGT 2 cut(s) 163, 254
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 3 cut(s) 78, 213, 237
Hsp92I GRCGYC 1 cut(s) 306
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 119, 184, 337
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 214
MabI ACCWGGT 1 cut(s) 205
MaeIII GTNAC 3 cut(s) 163, 196, 443
MalI GATC 3 cut(s) 121, 186, 339
MboI GATC 3 cut(s) 119, 184, 337
MboII GAAGA 9 cut(s) 260, 356, 392, 398, 425, 473, 482, 491, 503
MflI RGATCY 2 cut(s) 119, 337
MspR9I CCNGG 2 cut(s) 207, 278
MvaI CCWGG 2 cut(s) 207, 278
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 3 cut(s) 119, 184, 337
NlaIV GGNNCC 2 cut(s) 173, 373
NmuCI GTSAC 3 cut(s) 163, 196, 443
PaqCI CACCTGC 1 cut(s) 535
PcsI WCGNNNNNNNCGW 4 cut(s) 426, 429, 435, 444
PkrI GCNGC 2 cut(s) 85, 358
Psp6I CCWGG 2 cut(s) 205, 276
PspFI CCCAGC 1 cut(s) 519
PspGI CCWGG 2 cut(s) 205, 276
PspN4I GGNNCC 2 cut(s) 173, 373
PspPI GGNCC 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 119, 337
SatI GCNGC 2 cut(s) 84, 357
Sau3AI GATC 3 cut(s) 119, 184, 337
Sau96I GGNCC 1 cut(s) 274
ScrFI CCNGG 2 cut(s) 207, 278
SetI ASST 6 cut(s) 17, 69, 130, 157, 208, 529
SexAI ACCWGGT 1 cut(s) 205
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 274
SsiI CCGC 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 205, 276
TaaI ACNGT 2 cut(s) 163, 254
TauI GCSGC 1 cut(s) 359
TscAI CASTG 2 cut(s) 187, 382
TseFI GTSAC 3 cut(s) 163, 196, 443
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 3 cut(s) 163, 196, 443
TspDTI ATGAA 4 cut(s) 261, 300, 474, 492
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 2 cut(s) 187, 382
VpaK11BI GGWCC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.