RLG00000011598

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017606
Physical Location & Seq
Reverse (-)
10829669 .. 10831722
2054 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011598

Sequence Viewer

Length: 549 bp
ATGGAGATGGAGAGCTTCTGCTTCAATGGGTTTGTTCTGAATGAGTTGCTCTGCTCTGTTGGGCAGGTTCTGGTGGCTGAGGCTGCCAAGTCTATTGCTTTCTCTTTCTTGCTGATGGGATCTCTACCTAACAGCGCCTATGTTTTGCCCAAACCTTACACAGTCACAGGGTTCCCTATCACTGATCTTTATGCTGTGACGAAACCTGGTTCTGAGAACAAAGATGCAAGTGAAACTGAGGACGATGAAGACGGTGATGAGGAGGGTGGTGAGGACCAGGATGATGAAGCAGGAGATGAGGAGGATGCCTCCGGGGACGAAGTTGAGGGCAAAGGAGATCCAGAAGATGTGCCTGCGGCCAATGGTGATGGTGCCAGTGAAGAGGAAGACGATGATGATGAGGAGGAGAAGGAAGATGACGACGACGACGACGATGATGATGATGGTGACGACGATGGGGATGAAGAGACAGAAGATGATGAAGAGGATGAGGAAGATGAGGAGGACGAGGATGACATACCCCAGCCACCTGCCAAGAGGAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.81

Weight (kDa)

4.05

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017606)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28660
malus_domestica MD08G1151900.v1.1 MD15G1129000.v1.1
prunus_persica Prupe.1G484300_v2.0.a1
pyrus_communis pycom08g13000 pycom15g11610
rosa_chinensis RchiOBHm_Chr6g0297441
rosa_laevigata RLG00000011598
rosa_multiflora Rmu_sc0004323.1_g000006
rosa_roxburghii Rroxscaffold_7G00170500
rosa_rugosa Rorug06G0272100
rosa_wichuraiana Rw6G033370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 538
Acc36I ACCTGC 2 cut(s) 55, 538
AccB1I GGYRCC 1 cut(s) 371
AciI CCGC 1 cut(s) 356
AclWI GGATC 2 cut(s) 127, 332
AcoI YGGCCR 1 cut(s) 357
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 205, 276
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 2 cut(s) 127, 332
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 4 cut(s) 266, 281, 377, 458
AvaII GGWCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 255, 393
BbvCI CCTCAGC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 70
BccI CCATC 4 cut(s) 109, 362, 437, 449
BciT130I CCWGG 2 cut(s) 207, 278
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 461
BfoI RGCGCY 1 cut(s) 138
BfuAI ACCTGC 2 cut(s) 55, 538
BisI GCNGC 2 cut(s) 84, 357
BlsI GCNGC 2 cut(s) 85, 358
Bme1390I CCNGG 3 cut(s) 207, 278, 313
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 173, 373
BmrFI CCNGG 3 cut(s) 207, 278, 313
BmsI GCATC 2 cut(s) 214, 295
BpiI GAAGAC 2 cut(s) 255, 393
BplI GAGNNNNNCTC 2 cut(s) 293, 325
Bpu10I CCTNAGC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 375
BseBI CCWGG 2 cut(s) 207, 278
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 5 cut(s) 286, 310, 466, 493, 517
BseMII CTCAG 3 cut(s) 69, 204, 228
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 5 cut(s) 275, 314, 416, 419, 515
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 522
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 1 cut(s) 359
Bsp143I GATC 3 cut(s) 119, 184, 337
BspACI CCGC 1 cut(s) 356
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 3 cut(s) 70, 205, 229
BspLI GGNNCC 2 cut(s) 173, 373
BspMI ACCTGC 2 cut(s) 55, 538
BspPI GGATC 2 cut(s) 127, 332
BspT107I GGYRCC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 119, 184, 337
Bst2UI CCWGG 2 cut(s) 207, 278
Bst4CI ACNGT 2 cut(s) 163, 254
Bst6I CTCTTC 3 cut(s) 375, 459, 477
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 78, 213, 237
BstF5I GGATG 5 cut(s) 286, 310, 466, 493, 517
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 122, 187, 340
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 3 cut(s) 119, 184, 337
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 2 cut(s) 207, 278
BstSCI CCNGG 3 cut(s) 205, 276, 311
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 255, 393
BstX2I RGATCY 2 cut(s) 119, 337
BstYI RGATCY 2 cut(s) 119, 337
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 5 cut(s) 286, 310, 466, 493, 517
BtsIMutI CAGTG 2 cut(s) 180, 382
BveI ACCTGC 2 cut(s) 55, 538
Cac8I GCNNGC 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 274
CsiI ACCWGGT 1 cut(s) 205
CviJI RGCY 5 cut(s) 15, 77, 83, 359, 526
CviKI_1 RGCY 5 cut(s) 15, 77, 83, 359, 526
DdeI CTNAG 3 cut(s) 78, 213, 237
DpnI GATC 3 cut(s) 121, 186, 339
DpnII GATC 3 cut(s) 119, 184, 337
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 3 cut(s) 375, 459, 477
EarI CTCTTC 3 cut(s) 375, 459, 477
Eco47I GGWCC 1 cut(s) 274
EcoRII CCWGG 2 cut(s) 205, 276
FaiI YATR 3 cut(s) 141, 192, 518
FaqI GGGAC 1 cut(s) 329
Fnu4HI GCNGC 2 cut(s) 84, 357
FokI GGATG 5 cut(s) 293, 317, 473, 500, 524
Fsp4HI GCNGC 2 cut(s) 84, 357
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 84, 357
GsaI CCCAGC 1 cut(s) 526
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HpaII CCGG 1 cut(s) 312
HphI GGTGA 4 cut(s) 266, 281, 377, 458
Hpy188I TCNGA 2 cut(s) 39, 214
Hpy188III TCNNGA 1 cut(s) 341
Hpy99I CGWCG 5 cut(s) 425, 428, 431, 434, 455
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 2 cut(s) 163, 254
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 3 cut(s) 78, 213, 237
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 119, 184, 337
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 2 cut(s) 214, 295
MabI ACCWGGT 1 cut(s) 205
MaeIII GTNAC 3 cut(s) 163, 196, 446
MalI GATC 3 cut(s) 121, 186, 339
MboI GATC 3 cut(s) 119, 184, 337
MboII GAAGA 9 cut(s) 260, 356, 392, 398, 425, 476, 485, 494, 506
MflI RGATCY 2 cut(s) 119, 337
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 3 cut(s) 207, 278, 313
MvaI CCWGG 2 cut(s) 207, 278
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 1 cut(s) 313
NdeII GATC 3 cut(s) 119, 184, 337
NlaIV GGNNCC 2 cut(s) 173, 373
NmuCI GTSAC 3 cut(s) 163, 196, 446
PaqCI CACCTGC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 2 cut(s) 426, 429
PkrI GCNGC 2 cut(s) 85, 358
Psp6I CCWGG 2 cut(s) 205, 276
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 2 cut(s) 205, 276
PspN4I GGNNCC 2 cut(s) 173, 373
PspPI GGNCC 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 2 cut(s) 119, 337
SatI GCNGC 2 cut(s) 84, 357
Sau3AI GATC 3 cut(s) 119, 184, 337
Sau96I GGNCC 1 cut(s) 274
ScrFI CCNGG 3 cut(s) 207, 278, 313
SetI ASST 6 cut(s) 17, 69, 130, 157, 208, 532
SexAI ACCWGGT 1 cut(s) 205
SfaNI GCATC 2 cut(s) 214, 295
SinI GGWCC 1 cut(s) 274
SsiI CCGC 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 205, 276, 311
TaaI ACNGT 2 cut(s) 163, 254
TauI GCSGC 1 cut(s) 359
TscAI CASTG 2 cut(s) 187, 382
TseFI GTSAC 3 cut(s) 163, 196, 446
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 3 cut(s) 163, 196, 446
TspDTI ATGAA 4 cut(s) 261, 300, 477, 495
TspRI CASTG 2 cut(s) 187, 382
VpaK11BI GGWCC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.