Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0017606

Physical Location & Seq

Genomic Coordinates Reverse (-)

9328930 .. 9331366

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1129000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGATGGACGGCCTCTGCTCAAACGGCCTCGTTTTGGACGGTTTTCTCTGCTCTGTGGTGCAGGCTTTGGTGGCTGAGGCAGCCATTGCTGCTGCTGCCAAGTCTCTTGCTTTGTCCTGCTTGATGATGGGATCTGTGCGAAACAATATCAATGTTTTTCCCAAAGAACCTGAGGCAGTCACGGGGTTTCCTATCACTGAGCTTTATGTAGTGGAAACACCTGGTCCTGAGAACAAAGATGCAAGTGAAACTGAGGACGACGATGACGACGATGATGATGCTGCCGGTGATGACCAGGATGAAGATGGTGGCAACGAGGATGACGCCTCAGGAGAAGACAATGAGGGTAAAGGTAATCCAGAAGGCGAGCCTGAGGCCAATGGTGATGGTGTAAGCGAAGAGGATGGTGATGATGATGAGAAAGAAGATGAGGAAGACGATGACGACGATGACGACGATGATGATGGTGATGATGGGGAGGAAGAGACTGAAGACGAAGAAGAAGAGGACGAGGAAGATGAGGAGGAAGACATTCCTCAGCCACCTGCTAAGAGGAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.16

Weight (kDa)

4.05

Isoelectric Point (pI)

63.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017606)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28660
malus_domestica	MD08G1151900.v1.1 MD15G1129000.v1.1
prunus_persica	Prupe.1G484300_v2.0.a1
pyrus_communis	pycom08g13000 pycom15g11610
rosa_chinensis	RchiOBHm_Chr6g0297441
rosa_laevigata	RLG00000011598
rosa_multiflora	Rmu_sc0004323.1_g000006
rosa_roxburghii	Rroxscaffold_7G00170500
rosa_rugosa	Rorug06G0272100
rosa_wichuraiana	Rw6G033370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	556
Acc36I	ACCTGC	1 cut(s)	556
AclWI	GGATC	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	223, 297
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	111, 482
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	3 cut(s)	13, 28, 378
ApeKI	GCWGC	5 cut(s)	83, 92, 95, 98, 284
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	4 cut(s)	302, 398, 422, 482
AvaII	GGWCC	1 cut(s)	227
AxyI	CCTNAGG	3 cut(s)	174, 331, 375
BbsI	GAAGAC	4 cut(s)	345, 444, 501, 537
BbvCI	CCTCAGC	2 cut(s)	78, 540
BbvI	GCAGC	5 cut(s)	79, 82, 85, 95, 271
BccI	CCATC	6 cut(s)	124, 302, 383, 401, 461, 470
BceAI	ACGGC	2 cut(s)	28, 43
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	2 cut(s)	225, 299
BcoDI	GTCTC	2 cut(s)	111, 482
BfuAI	ACCTGC	1 cut(s)	556
BisI	GCNGC	5 cut(s)	84, 93, 96, 99, 285
BlsI	GCNGC	5 cut(s)	85, 94, 97, 100, 286
Bme1390I	CCNGG	2 cut(s)	225, 299
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	225, 299
BmsI	GCATC	2 cut(s)	232, 271
BpiI	GAAGAC	4 cut(s)	345, 444, 501, 537
Bpu10I	CCTNAGC	2 cut(s)	78, 540
BsaHI	GRCGYC	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	287
Bse21I	CCTNAGG	3 cut(s)	174, 331, 375
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	225, 299
BseGI	GGATG	3 cut(s)	307, 328, 412
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	8 cut(s)	69, 165, 192, 222, 246, 345, 366, 554
BseRI	GAGGAG	1 cut(s)	539
BseXI	GCAGC	5 cut(s)	79, 82, 85, 95, 271
BsgI	GTGCAG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	15, 30, 380
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	111, 482
BsnI	GGCC	3 cut(s)	15, 30, 380
Bsp143I	GATC	1 cut(s)	134
BspANI	GGCC	3 cut(s)	15, 30, 380
BspCNI	CTCAG	8 cut(s)	70, 166, 193, 223, 247, 344, 367, 553
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	225, 299
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	3 cut(s)	396, 480, 501
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	66, 371
BstDEI	CTNAG	9 cut(s)	78, 174, 201, 231, 255, 331, 375, 540, 552
BstF5I	GGATG	3 cut(s)	307, 328, 412
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	2 cut(s)	111, 482
BstMBI	GATC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 74, 83, 89, 92, 98
BstNI	CCWGG	2 cut(s)	225, 299
BstSCI	CCNGG	2 cut(s)	223, 297
BstV1I	GCAGC	5 cut(s)	79, 82, 85, 95, 271
BstV2I	GAAGAC	4 cut(s)	345, 444, 501, 537
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu36I	CCTNAGG	3 cut(s)	174, 331, 375
BsuRI	GGCC	3 cut(s)	15, 30, 380
BtsCI	GGATG	3 cut(s)	307, 328, 412
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	2 cut(s)	66, 371
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	335
CsiI	ACCWGGT	1 cut(s)	223
CviJI	RGCY	9 cut(s)	15, 30, 68, 77, 86, 205, 373, 380, 544
CviKI_1	RGCY	9 cut(s)	15, 30, 68, 77, 86, 205, 373, 380, 544
DdeI	CTNAG	9 cut(s)	78, 174, 201, 231, 255, 331, 375, 540, 552
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	396, 480, 501
EarI	CTCTTC	3 cut(s)	396, 480, 501
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	513
Eco81I	CCTNAGG	3 cut(s)	174, 331, 375
EcoRII	CCWGG	2 cut(s)	223, 297
FaiI	YATR	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	84, 93, 96, 99, 285
FokI	GGATG	3 cut(s)	314, 335, 419
Fsp4HI	GCNGC	5 cut(s)	84, 93, 96, 99, 285
GluI	GCNGC	5 cut(s)	84, 93, 96, 99, 285
HaeIII	GGCC	3 cut(s)	15, 30, 380
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	4 cut(s)	302, 398, 422, 482
Hpy188III	TCNNGA	3 cut(s)	230, 333, 362
Hpy99I	CGWCG	4 cut(s)	266, 275, 452, 461
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	64, 245
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 74, 83, 89, 92, 98
HpyF3I	CTNAG	9 cut(s)	78, 174, 201, 231, 255, 331, 375, 540, 552
Hsp92I	GRCGYC	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	134
Lsp1109I	GCAGC	5 cut(s)	79, 82, 85, 95, 271
LweI	GCATC	2 cut(s)	232, 271
MabI	ACCWGGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MflI	RGATCY	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	534
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	225, 299
MvaI	CCWGG	2 cut(s)	225, 299
MwoI	GCNNNNNNNGC	6 cut(s)	27, 74, 83, 89, 92, 98
NdeII	GATC	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	181
PaqCI	CACCTGC	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	5 cut(s)	267, 270, 447, 453, 456
PdmI	GAANNNNTTC	1 cut(s)	534
PkrI	GCNGC	5 cut(s)	85, 94, 97, 100, 286
Psp6I	CCWGG	2 cut(s)	223, 297
PspGI	CCWGG	2 cut(s)	223, 297
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	134
SatI	GCNGC	5 cut(s)	84, 93, 96, 99, 285
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	225, 299
SetI	ASST	5 cut(s)	175, 207, 226, 358, 550
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	232, 271
SinI	GGWCC	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	223, 297
TaaI	ACNGT	1 cut(s)	44
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	5 cut(s)	83, 92, 95, 98, 284
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.