FvH4_2g28800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017248
Physical Location & Seq
Reverse (-)
22475010 .. 22476125
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28800.t1

Sequence Viewer

Length: 1116 bp
ATGGCCGACGACGAATCTCAAGATCACCACCACGCTCTGCCGCTTCTAGAGGCTCTAAGAGAACCTTCCAAAGCCCTCCAAAACACCCCCATTGCCACAATCTACAACCACCACGACACAAACGCCGCCATCGAGAATCTTCTAGAGCTCGCAACACAAGCCGACCACATCATCTCCACCGACCCAACTCTCTTCCAACTCGCTCAGTTACTTAACAACCTCAAAACCCTCCTCGACCATCTCGAAAAGCTGCAAAGCCACGGCCTCCGGTCTCTCCTCCGCCGCCAAGTAACCAACTACAACATCTCCAAAGCCGGGTACGCTATTGAAGCTCAAGTTCAATCATATATTGATCGCAGAAACGTAGAGAGCTTTGTGCAAACCATGAATGACTCCGAGGAAGACGGCGAAAAGGTCGAGGCTTTGGTGGGTTTAGAGGCTAGATTGGCTAGAGGGTTTGATAAGGAGTATCAGGAGTTGATTCTGAAAGCTAAGGTGTTTTCCATCGTTGAGTTTGTAATATGTGAGTCTCTGCTTTCGAATTGGGTTAAAGACCAAGCTGCTGTTGTTGCTTTAGCTCTGGTTCAGTTCAACAAGGACGTGTTTGTGGGGTTGGTTTTGATGGGTCCGATAATTGGAGCTTTAGTTTCAATAGGTTCGTGTCGTTCGATTCAAGTCCTTGCTTCGCTGGTCAGGATTATAAGGACGCCTTTGGTGGATGACATCAATGAAGAAATACCAAGAATTATAGGCCTTTTGGGCGCCGAGGAGTTAAAGATCAAAGCGGCAGCGATGAACTGCGTATTCGAAATCGGAATCTTGGCGAGAGAGGAAGTGATTGAGGCCATGCTTGGGGCGGACTTGGTGAAGAAGCTAATGGATTTGCAGAGATTGGAGATGAGGGGTGATTTTAAAGAGGATGAATGTGTGGAGAGGTTTCCATTTTTGGGGTGTGTTGCTGGTTTTGCAGTGCAAGTTGAAGTTGGTGAAGGGTTGGAGAAGAGTGAGAAGAGAGAAGTGAAGCTGGAGATACTGAAGAGAGTTAGAGAAGCCTCTGTTTCTGAAGCAGAGGCTGCCACTGTTGTTTCAGAGGTGCTTTGGGGCTCTTCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

41.15

Weight (kDa)

4.9

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28800
malus_domestica MD15G1128100.v1.1
prunus_persica Prupe.1G483400_v2.0.a1
pyrus_communis pycom15g11530
rosa_chinensis RchiOBHm_Chr6g0297551
rosa_laevigata RLG00000011584
rosa_multiflora Rmu_ssc0000319.1_g000004
rosa_roxburghii Rroxscaffold_7G00170370
rosa_rugosa Rorug06G0273500
rosa_samantha Rh6AG384500 Rh6BG392600 Rh6DG385000
rosa_wichuraiana Rw6G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AccB1I GGYRCC 1 cut(s) 761
AciI CCGC 6 cut(s) 41, 126, 280, 283, 785, 857
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 3 cut(s) 1055, 1083, 1092
AcyI GRCGYC 2 cut(s) 707, 762
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 4 cut(s) 315, 635, 852, 947
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 6 cut(s) 329, 341, 592, 651, 674, 980
AjiI CACGTC 1 cut(s) 601
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 276, 534
AlwNI CAGNNNCTG 1 cut(s) 1073
AoxI GGCC 4 cut(s) 3, 262, 751, 843
ApeKI GCWGC 4 cut(s) 250, 560, 788, 1073
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 626
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 4 cut(s) 17, 877, 917, 998
AsuII TTCGAA 2 cut(s) 539, 807
AvaII GGWCC 1 cut(s) 626
BanI GGYRCC 1 cut(s) 761
BanII GRGCYC 2 cut(s) 150, 1106
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 4 cut(s) 237, 547, 800, 1060
BccI CCATC 4 cut(s) 137, 246, 512, 616
BceAI ACGGC 2 cut(s) 277, 421
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 276, 534
BfaI CTAG 4 cut(s) 47, 143, 441, 450
BfoI RGCGCY 1 cut(s) 765
BglI GCCNNNNNGGC 1 cut(s) 759
BisI GCNGC 8 cut(s) 41, 126, 251, 283, 561, 786, 789, 1074
BlsI GCNGC 8 cut(s) 42, 127, 252, 284, 562, 787, 790, 1075
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 626
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 1 cut(s) 626
BmiI GGNNCC 2 cut(s) 627, 763
BmrFI CCNGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 1046
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 2 cut(s) 539, 807
BpuEI CTTGAG 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 316
BsaHI GRCGYC 2 cut(s) 707, 762
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 259, 396, 765
BsaWI WCCGGW 1 cut(s) 267
BsaXI ACNNNNNCTCC 6 cut(s) 158, 188, 290, 320, 630, 660
Bsc4I CCNNNNNNNGG 4 cut(s) 315, 635, 852, 947
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 259, 396, 765
BseGI GGATG 2 cut(s) 724, 925
BseLI CCNNNNNNNGG 4 cut(s) 315, 635, 852, 947
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 218
BseRI GAGGAG 3 cut(s) 221, 266, 782
BseXI GCAGC 4 cut(s) 237, 547, 800, 1060
BshFI GGCC 4 cut(s) 5, 264, 753, 845
BshNI GGYRCC 1 cut(s) 761
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 268, 315
BslI CCNNNNNNNGG 4 cut(s) 315, 635, 852, 947
BsmAI GTCTC 2 cut(s) 276, 534
BsnI GGCC 4 cut(s) 5, 264, 753, 845
Bso31I GGTCTC 1 cut(s) 276
Bsp119I TTCGAA 2 cut(s) 539, 807
Bsp1286I GDGCHC 2 cut(s) 150, 1106
Bsp143I GATC 3 cut(s) 22, 352, 777
BspACI CCGC 6 cut(s) 41, 126, 280, 283, 785, 857
BspANI GGCC 4 cut(s) 5, 264, 753, 845
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 627, 763
BspQI GCTCTTC 1 cut(s) 1111
BspT104I TTCGAA 2 cut(s) 539, 807
BspT107I GGYRCC 1 cut(s) 761
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 3 cut(s) 259, 396, 765
BssMI GATC 3 cut(s) 22, 352, 777
BssNI GRCGYC 2 cut(s) 707, 762
Bst4CI ACNGT 1 cut(s) 1081
Bst6I CTCTTC 5 cut(s) 197, 995, 1004, 1031, 1111
BstACI GRCGYC 2 cut(s) 707, 762
BstAPI GCANNNNNTGC 1 cut(s) 1073
BstBI TTCGAA 2 cut(s) 539, 807
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 3 cut(s) 56, 204, 492
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 724, 925
BstH2I RGCGCY 1 cut(s) 765
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 3 cut(s) 25, 355, 780
BstMAI GTCTC 2 cut(s) 276, 534
BstMBI GATC 3 cut(s) 22, 352, 777
BstMWI GCNNNNNNNGC 8 cut(s) 158, 320, 329, 446, 569, 759, 965, 1073
BstSCI CCNGG 1 cut(s) 314
BstV1I GCAGC 4 cut(s) 237, 547, 800, 1060
BstV2I GAAGAC 1 cut(s) 408
BsuRI GGCC 4 cut(s) 5, 264, 753, 845
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 806
BtrI CACGTC 1 cut(s) 601
BtsCI GGATG 2 cut(s) 724, 925
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 2 cut(s) 975, 1077
Cac8I GCNNGC 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 1073
CfoI GCGC 1 cut(s) 764
Cfr13I GGNCC 1 cut(s) 626
CseI GACGC 1 cut(s) 715
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 385, 847
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 3 cut(s) 56, 204, 492
DinI GGCGCC 1 cut(s) 763
DpnI GATC 3 cut(s) 24, 354, 779
DpnII GATC 3 cut(s) 22, 352, 777
DraI TTTAAA 1 cut(s) 913
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 197, 995, 1004, 1031, 1111
EarI CTCTTC 5 cut(s) 197, 995, 1004, 1031, 1111
EciI GGCGGA 2 cut(s) 269, 872
Ecl136II GAGCTC 1 cut(s) 148
Eco147I AGGCCT 1 cut(s) 753
Eco24I GRGCYC 2 cut(s) 150, 1106
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 626
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 3 cut(s) 1055, 1083, 1092
EcoICRI GAGCTC 1 cut(s) 148
EcoT38I GRGCYC 2 cut(s) 150, 1106
EgeI GGCGCC 1 cut(s) 763
EheI GGCGCC 1 cut(s) 763
FaeI CATG 2 cut(s) 388, 850
FaiI YATR 7 cut(s) 346, 348, 386, 523, 701, 749, 848
FalI AAGNNNNNCTT 4 cut(s) 49, 81, 694, 726
FatI CATG 2 cut(s) 384, 846
Fnu4HI GCNGC 8 cut(s) 41, 126, 251, 283, 561, 786, 789, 1074
FokI GGATG 2 cut(s) 731, 932
FriOI GRGCYC 2 cut(s) 150, 1106
Fsp4HI GCNGC 8 cut(s) 41, 126, 251, 283, 561, 786, 789, 1074
FspBI CTAG 4 cut(s) 47, 143, 441, 450
GlaI GCGC 1 cut(s) 763
GluI GCNGC 8 cut(s) 41, 126, 251, 283, 561, 786, 789, 1074
GsuI CTGGAG 1 cut(s) 1046
HaeII RGCGCY 1 cut(s) 765
HaeIII GGCC 4 cut(s) 5, 264, 753, 845
HapII CCGG 2 cut(s) 268, 315
HgaI GACGC 1 cut(s) 715
HhaI GCGC 1 cut(s) 764
Hin1I GRCGYC 2 cut(s) 707, 762
Hin1II CATG 2 cut(s) 388, 850
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HinfI GANTC 7 cut(s) 14, 136, 392, 481, 527, 670, 816
HpaII CCGG 2 cut(s) 268, 315
HphI GGTGA 4 cut(s) 17, 877, 917, 998
Hpy188I TCNGA 6 cut(s) 397, 486, 630, 815, 1063, 1090
Hpy188III TCNNGA 7 cut(s) 20, 47, 133, 143, 242, 473, 694
Hpy99I CGWCG 2 cut(s) 11, 14
HpyAV CCTTC 2 cut(s) 75, 983
HpyCH4III ACNGT 1 cut(s) 1081
HpyCH4IV ACGT 2 cut(s) 363, 600
HpyCH4V TGCA 5 cut(s) 253, 379, 886, 968, 973
HpyF10VI GCNNNNNNNGC 8 cut(s) 158, 320, 329, 446, 569, 759, 965, 1073
HpyF3I CTNAG 3 cut(s) 56, 204, 492
HpySE526I ACGT 2 cut(s) 363, 600
Hsp92I GRCGYC 2 cut(s) 707, 762
Hsp92II CATG 2 cut(s) 388, 850
HspAI GCGC 1 cut(s) 762
KasI GGCGCC 1 cut(s) 761
Kzo9I GATC 3 cut(s) 22, 352, 777
LguI GCTCTTC 1 cut(s) 1111
LmnI GCTCC 1 cut(s) 638
LpnPI CCDG 8 cut(s) 281, 328, 458, 566, 674, 679, 945, 1010
Lsp1109I GCAGC 4 cut(s) 237, 547, 800, 1060
MaeI CTAG 4 cut(s) 47, 143, 441, 450
MaeII ACGT 2 cut(s) 363, 600
MaeIII GTNAC 2 cut(s) 207, 289
MalI GATC 3 cut(s) 24, 354, 779
MboI GATC 3 cut(s) 22, 352, 777
MboII GAAGA 9 cut(s) 131, 184, 413, 743, 880, 1012, 1021, 1048, 1098
MhlI GDGCHC 2 cut(s) 150, 1106
MluCI AATT 3 cut(s) 541, 633, 744
Mly113I GGCGCC 1 cut(s) 762
MlyI GAGTC 2 cut(s) 386, 536
MmeI TCCRAC 2 cut(s) 220, 975
MseI TTAA 4 cut(s) 213, 549, 773, 912
MspI CCGG 2 cut(s) 268, 315
MspR9I CCNGG 1 cut(s) 316
MwoI GCNNNNNNNGC 8 cut(s) 158, 320, 329, 446, 569, 759, 965, 1073
NarI GGCGCC 1 cut(s) 762
NciI CCSGG 1 cut(s) 316
NdeII GATC 3 cut(s) 22, 352, 777
NlaIII CATG 2 cut(s) 388, 850
NlaIV GGNNCC 2 cut(s) 627, 763
NmeAIII GCCGAG 1 cut(s) 790
NspV TTCGAA 2 cut(s) 539, 807
PceI AGGCCT 1 cut(s) 753
PciSI GCTCTTC 1 cut(s) 1111
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 240, 665
PfeI GAWTC 5 cut(s) 14, 136, 481, 670, 816
PkrI GCNGC 8 cut(s) 42, 127, 252, 284, 562, 787, 790, 1075
PleI GAGTC 2 cut(s) 386, 535
PluTI GGCGCC 1 cut(s) 765
PpsI GAGTC 2 cut(s) 386, 535
PsiI TTATAA 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 627, 763
PspPI GGNCC 1 cut(s) 626
PstNI CAGNNNCTG 1 cut(s) 1073
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 1111
SaqAI TTAA 4 cut(s) 213, 549, 773, 912
SatI GCNGC 8 cut(s) 41, 126, 251, 283, 561, 786, 789, 1074
Sau3AI GATC 3 cut(s) 22, 352, 777
Sau96I GGNCC 1 cut(s) 626
SchI GAGTC 2 cut(s) 386, 536
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 2 cut(s) 150, 1106
SfoI GGCGCC 1 cut(s) 763
SfuI TTCGAA 2 cut(s) 539, 807
SinI GGWCC 1 cut(s) 626
SmlI CTYRAG 2 cut(s) 18, 333
SmoI CTYRAG 2 cut(s) 18, 333
Sse9I AATT 3 cut(s) 541, 633, 744
SseBI AGGCCT 1 cut(s) 753
SsiI CCGC 6 cut(s) 41, 126, 280, 283, 785, 857
SspDI GGCGCC 1 cut(s) 761
SspMI CTAG 4 cut(s) 47, 143, 441, 450
SstI GAGCTC 1 cut(s) 150
StuI AGGCCT 1 cut(s) 753
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 1081
TaiI ACGT 2 cut(s) 366, 603
TaqI TCGA 7 cut(s) 132, 234, 243, 417, 539, 668, 807
TasI AATT 3 cut(s) 541, 633, 744
TauI GCSGC 4 cut(s) 43, 128, 285, 788
TfiI GAWTC 5 cut(s) 14, 136, 481, 670, 816
Tru1I TTAA 4 cut(s) 213, 549, 773, 912
Tru9I TTAA 4 cut(s) 213, 549, 773, 912
TscAI CASTG 2 cut(s) 975, 1084
TseI GCWGC 4 cut(s) 250, 560, 788, 1073
TspDTI ATGAA 4 cut(s) 401, 744, 809, 936
TspRI CASTG 2 cut(s) 975, 1084
VpaK11BI GGWCC 1 cut(s) 626
XbaI TCTAGA 2 cut(s) 46, 142
XspI CTAG 4 cut(s) 47, 143, 441, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.