Prupe.1G483400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017248
Physical Location & Seq
Forward (+)
40306165 .. 40307713
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G483400.1

Sequence Viewer

Length: 1164 bp
ATGGACGAAGCTGAGCAGCAAGTAGAGAACCAACATCTTCTCCCGCTGCTAGAGGCTCTGAAGAAAGCTTCTAAAGACCTACAAAGCAACCCCATTTCAATTATATACAACAATTACGACATAAGCACCACCATTGAAGCTCTTCTAGAGCTCGGAACCAAAGCCGACCCCGTTATTTCCATAGACCCAAGTCTCTTCAAGCTCAATCAGTTGCTCAGCAACCTCAAAACCCTTTTCGAAAAACTCGAAAAACTGCAGGGCTATGGCCTCCGGTCCCTCCTCCACCGCCAAATCACCAATTACAAAATTTCCCAAATTGGGTACGCCATGGAAGCAGAGATTCAAGCGTACGTAGATCAGAAAAATGTTCAAAGTTTTGTGAAAACTATGGAAGAGTCTGTCGAAGACGATAAGAAGGTGAAGGCTTTGATGGGTTTAGAGAACAGGTTGGGCCAAGGGTTTGATAAACAGTATCAGCAGTTAATTTTGAGAGCAAAGGTATTTTCTTTTCTTGAATTTATGGTTTGTGACTCAAAGTTTTCGAATTGGGTTCGAGACCAGGCTGCTCTTGCTGTTCTTGGTCTGGTTAAATTCAATAAGGATGTTTTTGTGGGATTGGTGCTGATGGGTCCGATTGTTAGAGCTTTAATTCAAATGGGTTCATCTTGTTCGATTCAAGTCCTCACCGGACTAGTCAAAATCATCAGAACCCCTCTGGTTGATGACATCAATGGAGAAATCCCAAGAATTATCAGCCTCTTGGGCTCTGAAGACTTGTCAACTAAAGTGGCAGCCATGAATTGCATGCTTGAAATTGCGTTTTTGGGCAGAGAGGAAGTGATTGGTTCAATGCTTGAAGAGGACCTGATCAAGAAGCTTATGGGTTTGCAGAGATTGGAGGTGGGTTTGCAGTCCAATGTGGAAGAAAATGGAAGTGTTTGTGTGGAGGAGAGAGAGCCAAAAATGGAGGAAAGTGTGGAGAAATTTCCATTTTCAAGGTGTGTGGCCAGTTTTGCAGTGCAAGTGGAAGTTGGGGAAGGATTGGAGCAGAGTGAGAAAAGAGCTTTTAAATTGGAAATACTGAAGAGAGTGAGAGAGGCCTCTGTTTCTGATGCAGAGGCAGCTACTGTTGTTGCAGAGGTGCTGTGGGGTTCTTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

43.23

Weight (kDa)

4.96

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28800
malus_domestica MD15G1128100.v1.1
prunus_persica Prupe.1G483400_v2.0.a1
pyrus_communis pycom15g11530
rosa_chinensis RchiOBHm_Chr6g0297551
rosa_laevigata RLG00000011584
rosa_multiflora Rmu_ssc0000319.1_g000004
rosa_roxburghii Rroxscaffold_7G00170370
rosa_rugosa Rorug06G0273500
rosa_samantha Rh6AG384500 Rh6BG392600 Rh6DG385000
rosa_wichuraiana Rw6G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 286
AcoI YGGCCR 1 cut(s) 1005
AcsI RAATTY 4 cut(s) 306, 515, 590, 983
AcuI CTGAAG 3 cut(s) 80, 789, 1103
AfaI GTAC 2 cut(s) 323, 350
AfiI CCNNNNNNNGG 1 cut(s) 318
AhlI ACTAGT 1 cut(s) 691
AjnI CCWGG 1 cut(s) 558
AluBI AGCT 9 cut(s) 11, 68, 140, 151, 202, 644, 877, 1064, 1124
AluI AGCT 9 cut(s) 11, 68, 140, 151, 202, 644, 877, 1064, 1124
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 2 cut(s) 197, 549
AlwNI CAGNNNCTG 1 cut(s) 1127
AoxI GGCC 4 cut(s) 265, 451, 1005, 1098
ApeKI GCWGC 5 cut(s) 16, 46, 563, 791, 1121
ApoI RAATTY 4 cut(s) 306, 515, 590, 983
Asp700I GAANNNNTTC 1 cut(s) 141
AspS9I GGNCC 4 cut(s) 273, 451, 629, 862
AsuHPI GGTGA 4 cut(s) 286, 430, 676, 1149
AsuII TTCGAA 2 cut(s) 237, 542
AvaII GGWCC 3 cut(s) 273, 629, 862
BalI TGGCCA 1 cut(s) 1007
BanII GRGCYC 2 cut(s) 153, 767
BbsI GAAGAC 2 cut(s) 411, 777
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 5 cut(s) 28, 33, 550, 803, 1133
BccI CCATC 2 cut(s) 424, 619
BciT130I CCWGG 1 cut(s) 560
BclI TGATCA 1 cut(s) 867
BcoDI GTCTC 2 cut(s) 197, 549
BcuI ACTAGT 1 cut(s) 691
BfaI CTAG 3 cut(s) 50, 146, 692
BfmI CTRYAG 1 cut(s) 254
BglI GCCNNNNNGGC 1 cut(s) 762
BisI GCNGC 5 cut(s) 17, 47, 564, 792, 1122
BlpI GCTNAGC 2 cut(s) 12, 215
BlsI GCNGC 5 cut(s) 18, 48, 565, 793, 1123
Bme1390I CCNGG 1 cut(s) 560
Bme18I GGWCC 3 cut(s) 273, 629, 862
BmgT120I GGNCC 4 cut(s) 273, 451, 629, 862
BmiI GGNNCC 3 cut(s) 157, 275, 630
BmrFI CCNGG 1 cut(s) 560
BmsI GCATC 1 cut(s) 1102
BoxI GACNNNNGTC 1 cut(s) 189
BpiI GAAGAC 2 cut(s) 411, 777
Bpu1102I GCTNAGC 2 cut(s) 12, 215
Bpu14I TTCGAA 2 cut(s) 237, 542
BsaAI YACGTR 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 549
BsaJI CCNNGG 2 cut(s) 327, 454
BsaWI WCCGGW 2 cut(s) 270, 686
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 1008
BseBI CCWGG 1 cut(s) 560
BseDI CCNNGG 2 cut(s) 327, 454
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 1008
BseRI GAGGAG 2 cut(s) 269, 962
BseXI GCAGC 5 cut(s) 28, 33, 550, 803, 1133
BshFI GGCC 4 cut(s) 267, 453, 1007, 1100
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 271, 687
BsiWI CGTACG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 2 cut(s) 197, 549
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 4 cut(s) 267, 453, 1007, 1100
Bso31I GGTCTC 1 cut(s) 549
Bsp119I TTCGAA 2 cut(s) 237, 542
Bsp1286I GDGCHC 2 cut(s) 153, 767
Bsp143I GATC 2 cut(s) 355, 867
Bsp1720I GCTNAGC 2 cut(s) 12, 215
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 2 cut(s) 44, 286
BspANI GGCC 4 cut(s) 267, 453, 1007, 1100
BspCNI CTCAG 2 cut(s) 4, 228
BspLI GGNNCC 3 cut(s) 157, 275, 630
BspMAI CTGCAG 1 cut(s) 258
BspQI GCTCTTC 1 cut(s) 147
BspT104I TTCGAA 2 cut(s) 237, 542
BspTNI GGTCTC 1 cut(s) 549
BsrI ACTGG 1 cut(s) 1008
BssECI CCNNGG 2 cut(s) 327, 454
BssMI GATC 2 cut(s) 355, 867
BssT1I CCWWGG 2 cut(s) 327, 454
Bst2UI CCWGG 1 cut(s) 560
Bst4CI ACNGT 2 cut(s) 471, 1129
Bst6I CTCTTC 5 cut(s) 147, 200, 387, 852, 1079
BstBAI YACGTR 1 cut(s) 352
BstBI TTCGAA 2 cut(s) 237, 542
BstC8I GCNNGC 1 cut(s) 806
BstDEI CTNAG 2 cut(s) 12, 215
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 607
BstKTI GATC 2 cut(s) 358, 870
BstMAI GTCTC 2 cut(s) 197, 549
BstMBI GATC 2 cut(s) 355, 867
BstMWI GCNNNNNNNGC 5 cut(s) 332, 569, 762, 1013, 1121
BstNI CCWGG 1 cut(s) 560
BstNSI RCATGY 1 cut(s) 808
BstPAI GACNNNNGTC 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 558
BstSFI CTRYAG 1 cut(s) 254
BstSNI TACGTA 1 cut(s) 352
BstV1I GCAGC 5 cut(s) 28, 33, 550, 803, 1133
BstV2I GAAGAC 2 cut(s) 411, 777
BsuRI GGCC 4 cut(s) 267, 453, 1007, 1100
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 1 cut(s) 1023
BtsIMutI CAGTG 1 cut(s) 1023
Cac8I GCNNGC 1 cut(s) 806
CaiI CAGNNNCTG 1 cut(s) 1127
Cfr13I GGNCC 4 cut(s) 273, 451, 629, 862
Csp6I GTAC 2 cut(s) 322, 349
CspCI CAANNNNNGTGG 4 cut(s) 768, 803, 984, 1019
CviAII CATG 3 cut(s) 328, 796, 805
CviQI GTAC 2 cut(s) 322, 349
DdeI CTNAG 2 cut(s) 12, 215
DpnI GATC 2 cut(s) 357, 869
DpnII GATC 2 cut(s) 355, 867
DraI TTTAAA 1 cut(s) 1069
EaeI YGGCCR 1 cut(s) 1005
Eam1104I CTCTTC 5 cut(s) 147, 200, 387, 852, 1079
EarI CTCTTC 5 cut(s) 147, 200, 387, 852, 1079
Ecl136II GAGCTC 1 cut(s) 151
Eco105I TACGTA 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 327, 454
Eco147I AGGCCT 1 cut(s) 1100
Eco24I GRGCYC 2 cut(s) 153, 767
Eco31I GGTCTC 1 cut(s) 549
Eco47I GGWCC 3 cut(s) 273, 629, 862
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 3 cut(s) 80, 789, 1103
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 862
EcoRII CCWGG 1 cut(s) 558
EcoT14I CCWWGG 2 cut(s) 327, 454
EcoT38I GRGCYC 2 cut(s) 153, 767
ErhI CCWWGG 2 cut(s) 327, 454
FaeI CATG 3 cut(s) 331, 799, 808
FaqI GGGAC 1 cut(s) 259
FatI CATG 3 cut(s) 327, 795, 804
FauI CCCGC 1 cut(s) 51
FbaI TGATCA 1 cut(s) 867
Fnu4HI GCNGC 5 cut(s) 17, 47, 564, 792, 1122
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 2 cut(s) 153, 767
Fsp4HI GCNGC 5 cut(s) 17, 47, 564, 792, 1122
FspBI CTAG 3 cut(s) 50, 146, 692
GluI GCNGC 5 cut(s) 17, 47, 564, 792, 1122
HaeIII GGCC 4 cut(s) 267, 453, 1007, 1100
HapII CCGG 2 cut(s) 271, 687
Hin1II CATG 3 cut(s) 331, 799, 808
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HindIII AAGCTT 2 cut(s) 66, 875
HinfI GANTC 4 cut(s) 340, 395, 530, 673
HpaII CCGG 2 cut(s) 271, 687
HphI GGTGA 4 cut(s) 286, 430, 676, 1149
Hpy166II GTNNAC 1 cut(s) 780
Hpy188I TCNGA 7 cut(s) 60, 155, 360, 633, 707, 769, 1111
Hpy188III TCNNGA 4 cut(s) 146, 512, 554, 871
Hpy8I GTNNAC 1 cut(s) 780
HpyAV CCTTC 3 cut(s) 409, 415, 1031
HpyCH4III ACNGT 2 cut(s) 471, 1129
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 8 cut(s) 256, 804, 889, 910, 1016, 1021, 1115, 1136
HpyF10VI GCNNNNNNNGC 5 cut(s) 332, 569, 762, 1013, 1121
HpyF3I CTNAG 2 cut(s) 12, 215
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 3 cut(s) 331, 799, 808
Ksp22I TGATCA 1 cut(s) 867
Kzo9I GATC 2 cut(s) 355, 867
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 1045
Lsp1109I GCAGC 5 cut(s) 28, 33, 550, 803, 1133
LweI GCATC 1 cut(s) 1102
MaeI CTAG 3 cut(s) 50, 146, 692
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 527
MalI GATC 2 cut(s) 357, 869
MboI GATC 2 cut(s) 355, 867
MhlI GDGCHC 2 cut(s) 153, 767
MlsI TGGCCA 1 cut(s) 1007
MluNI TGGCCA 1 cut(s) 1007
MlyI GAGTC 2 cut(s) 404, 524
Mox20I TGGCCA 1 cut(s) 1007
MroXI GAANNNNTTC 1 cut(s) 141
MscI TGGCCA 1 cut(s) 1007
MseI TTAA 4 cut(s) 482, 588, 647, 1068
Msp20I TGGCCA 1 cut(s) 1007
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 2 cut(s) 271, 687
MspR9I CCNGG 1 cut(s) 560
MvaI CCWGG 1 cut(s) 560
MwoI GCNNNNNNNGC 5 cut(s) 332, 569, 762, 1013, 1121
NcoI CCATGG 1 cut(s) 327
NdeII GATC 2 cut(s) 355, 867
NlaIII CATG 3 cut(s) 331, 799, 808
NlaIV GGNNCC 3 cut(s) 157, 275, 630
NmuCI GTSAC 1 cut(s) 527
NspI RCATGY 1 cut(s) 808
NspV TTCGAA 2 cut(s) 237, 542
PaeI GCATGC 1 cut(s) 808
PceI AGGCCT 1 cut(s) 1100
PciSI GCTCTTC 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 2 cut(s) 340, 673
Pfl23II CGTACG 1 cut(s) 348
PkrI GCNGC 5 cut(s) 18, 48, 565, 793, 1123
PleI GAGTC 2 cut(s) 403, 524
PpsI GAGTC 2 cut(s) 403, 524
Ppu21I YACGTR 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 862
PshAI GACNNNNGTC 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 862
Psp6I CCWGG 1 cut(s) 558
PspGI CCWGG 1 cut(s) 558
PspLI CGTACG 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 157, 275, 630
PspPI GGNCC 4 cut(s) 273, 451, 629, 862
PspPPI RGGWCCY 1 cut(s) 862
PstI CTGCAG 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 1127
RsaI GTAC 2 cut(s) 323, 350
RsaNI GTAC 2 cut(s) 322, 349
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 4 cut(s) 482, 588, 647, 1068
SatI GCNGC 5 cut(s) 17, 47, 564, 792, 1122
Sau3AI GATC 2 cut(s) 355, 867
Sau96I GGNCC 4 cut(s) 273, 451, 629, 862
SchI GAGTC 2 cut(s) 404, 524
ScrFI CCNGG 1 cut(s) 560
SduI GDGCHC 2 cut(s) 153, 767
SfaNI GCATC 1 cut(s) 1102
SfcI CTRYAG 1 cut(s) 254
SfuI TTCGAA 2 cut(s) 237, 542
SinI GGWCC 3 cut(s) 273, 629, 862
SnaBI TACGTA 1 cut(s) 352
SpeI ACTAGT 1 cut(s) 691
SphI GCATGC 1 cut(s) 808
SseBI AGGCCT 1 cut(s) 1100
SsiI CCGC 2 cut(s) 44, 286
SspMI CTAG 3 cut(s) 50, 146, 692
SstI GAGCTC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 1100
StyD4I CCNGG 1 cut(s) 558
StyI CCWWGG 2 cut(s) 327, 454
TaaI ACNGT 2 cut(s) 471, 1129
TaiI ACGT 1 cut(s) 354
TaqI TCGA 6 cut(s) 237, 246, 402, 542, 553, 671
TfiI GAWTC 2 cut(s) 340, 673
Tru1I TTAA 4 cut(s) 482, 588, 647, 1068
Tru9I TTAA 4 cut(s) 482, 588, 647, 1068
TscAI CASTG 1 cut(s) 1023
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 5 cut(s) 16, 46, 563, 791, 1121
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 2 cut(s) 651, 812
TspRI CASTG 1 cut(s) 1023
VpaK11BI GGWCC 3 cut(s) 273, 629, 862
XapI RAATTY 4 cut(s) 306, 515, 590, 983
XbaI TCTAGA 1 cut(s) 145
XceI RCATGY 1 cut(s) 808
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 3 cut(s) 50, 146, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.