Rorug06G0273500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017248
Physical Location & Seq
Reverse (-)
42080605 .. 42081099
495 bp
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UTR
Exon/CDS
Intron
Rorug06G0273500.1

Sequence Viewer

Length: 495 bp
ATGGGTTCCTCCGGTTTGATCAGAGAGAACTGGGGGTTGATCCAGCAAGCCAAGTCGTTGTTCGGGTCGGATCAGCCCGACCCGGAAACAAGACCGCTAGAGTTCATCAACCAGAACTTTTCCATTTTTGACATCGGCATCATTGCCGGCGTGCAGGAAGAGGATCACAGCTCGTACAATGACGACAAGAAACATGTTTTTGGTTCTAGCAAGAAGAAGAACGGAGCTCCGAACCCAAACCCGGACTTCGCAGATTCCGACTGCCAGATGAAAAGAGCACCGAAGAAACGGGGCCGGAAACCAGGGCTGGGCCGAGACACGCCGCTCAACCACATGGAGGCAGAGAGGCAGCGGCGGGAGAAGCTCACCTCGCAAGGGCGGCGTTGGAAGCGAGGGTGTGAGCCCGGAAGAAGGAAGAAGAAAGAGATAAAAACGAAGGAAAAAAAAAATAACAGAAAAAAAAAATTATTAAAAAAAAAAGAATTGAGGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.88

Weight (kDa)

10.2

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28800
malus_domestica MD15G1128100.v1.1
prunus_persica Prupe.1G483400_v2.0.a1
pyrus_communis pycom15g11530
rosa_chinensis RchiOBHm_Chr6g0297551
rosa_laevigata RLG00000011584
rosa_multiflora Rmu_ssc0000319.1_g000004
rosa_roxburghii Rroxscaffold_7G00170370
rosa_rugosa Rorug06G0273500
rosa_samantha Rh6AG384500 Rh6BG392600 Rh6DG385000
rosa_wichuraiana Rw6G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 325
AciI CCGC 5 cut(s) 95, 323, 352, 355, 379
AclWI GGATC 3 cut(s) 34, 78, 171
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 5 cut(s) 241, 308, 337, 375, 411
AflIII ACRYGT 1 cut(s) 193
AjnI CCWGG 1 cut(s) 301
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 3 cut(s) 171, 227, 364
AluI AGCT 3 cut(s) 171, 227, 364
Alw21I GWGCWC 2 cut(s) 229, 280
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 3 cut(s) 34, 78, 171
AoxI GGCC 2 cut(s) 292, 310
ApeKI GCWGC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 292, 310
AsuC2I CCSGG 3 cut(s) 83, 242, 405
AsuHPI GGTGA 1 cut(s) 358
BanII GRGCYC 2 cut(s) 229, 405
Bbv12I GWGCWC 2 cut(s) 229, 280
BbvI GCAGC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 303
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 3 cut(s) 83, 242, 405
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 2 cut(s) 98, 207
BisI GCNGC 4 cut(s) 323, 350, 353, 380
BlsI GCNGC 4 cut(s) 324, 351, 354, 381
Bme1390I CCNGG 4 cut(s) 83, 242, 303, 405
BmgT120I GGNCC 2 cut(s) 292, 310
BmiI GGNNCC 2 cut(s) 7, 293
BmrFI CCNGG 4 cut(s) 83, 242, 303, 405
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 40
BpuMI CCSGG 3 cut(s) 83, 242, 405
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 5 cut(s) 241, 308, 337, 375, 411
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 302
BseLI CCNNNNNNNGG 5 cut(s) 241, 308, 337, 375, 411
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 361
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 2 cut(s) 294, 312
BsiHKAI GWGCWC 2 cut(s) 229, 280
BsiSI CCGG 6 cut(s) 12, 83, 147, 242, 295, 405
BslI CCNNNNNNNGG 5 cut(s) 241, 308, 337, 375, 411
BsmAI GTCTC 1 cut(s) 309
BsnI GGCC 2 cut(s) 294, 312
Bsp1286I GDGCHC 3 cut(s) 229, 280, 405
Bsp143I GATC 4 cut(s) 18, 39, 70, 163
BspACI CCGC 5 cut(s) 95, 323, 352, 355, 379
BspANI GGCC 2 cut(s) 294, 312
BspLI GGNNCC 2 cut(s) 7, 293
BspPI GGATC 3 cut(s) 34, 78, 171
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 4 cut(s) 18, 39, 70, 163
Bst2UI CCWGG 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 48, 148, 152
BstKTI GATC 4 cut(s) 21, 42, 73, 166
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 4 cut(s) 18, 39, 70, 163
BstMWI GCNNNNNNNGC 4 cut(s) 361, 370, 379, 388
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 4 cut(s) 81, 240, 301, 403
BstV1I GCAGC 1 cut(s) 361
BsuRI GGCC 2 cut(s) 294, 312
Cac8I GCNNGC 3 cut(s) 48, 148, 152
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 292, 310
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 194, 334
CviJI RGCY 9 cut(s) 50, 76, 171, 227, 294, 307, 312, 364, 403
CviKI_1 RGCY 9 cut(s) 50, 76, 171, 227, 294, 307, 312, 364, 403
CviQI GTAC 1 cut(s) 175
DpnI GATC 4 cut(s) 20, 41, 72, 165
DpnII GATC 4 cut(s) 18, 39, 70, 163
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 229, 405
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 301
EcoT38I GRGCYC 2 cut(s) 229, 405
FaeI CATG 2 cut(s) 197, 337
FaiI YATR 3 cut(s) 195, 335, 493
FatI CATG 2 cut(s) 193, 333
FauI CCCGC 1 cut(s) 348
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 323, 350, 353, 380
FriOI GRGCYC 2 cut(s) 229, 405
Fsp4HI GCNGC 4 cut(s) 323, 350, 353, 380
FspBI CTAG 2 cut(s) 98, 207
GluI GCNGC 4 cut(s) 323, 350, 353, 380
GsaI CCCAGC 1 cut(s) 311
HaeIII GGCC 2 cut(s) 294, 312
HapII CCGG 6 cut(s) 12, 83, 147, 242, 295, 405
Hin1II CATG 2 cut(s) 197, 337
HinfI GANTC 1 cut(s) 254
HpaII CCGG 6 cut(s) 12, 83, 147, 242, 295, 405
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 4 cut(s) 23, 70, 231, 259
HpyAV CCTTC 2 cut(s) 405, 430
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 4 cut(s) 361, 370, 379, 388
Hsp92II CATG 2 cut(s) 197, 337
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 18, 39, 70, 163
LmnI GCTCC 2 cut(s) 224, 232
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 147
MaeI CTAG 2 cut(s) 98, 207
MalI GATC 4 cut(s) 20, 41, 72, 165
MbiI CCGCTC 1 cut(s) 325
MboI GATC 4 cut(s) 18, 39, 70, 163
MboII GAAGA 7 cut(s) 170, 226, 229, 295, 420, 427, 430
MhlI GDGCHC 3 cut(s) 229, 280, 405
MluCI AATT 2 cut(s) 464, 482
MmeI TCCRAC 3 cut(s) 48, 282, 365
MnlI CCTC 7 cut(s) 19, 154, 331, 339, 379, 386, 480
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 6 cut(s) 12, 83, 147, 242, 295, 405
MspR9I CCNGG 4 cut(s) 83, 242, 303, 405
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 4 cut(s) 361, 370, 379, 388
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 3 cut(s) 83, 242, 405
NdeII GATC 4 cut(s) 18, 39, 70, 163
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 197, 337
NlaIV GGNNCC 2 cut(s) 7, 293
NmeAIII GCCGAG 1 cut(s) 338
NspI RCATGY 1 cut(s) 197
PciI ACATGT 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 4 cut(s) 324, 351, 354, 381
PscI ACATGT 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 7, 293
PspPI GGNCC 2 cut(s) 292, 310
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 4 cut(s) 323, 350, 353, 380
Sau3AI GATC 4 cut(s) 18, 39, 70, 163
Sau96I GGNCC 2 cut(s) 292, 310
ScrFI CCNGG 4 cut(s) 83, 242, 303, 405
SduI GDGCHC 3 cut(s) 229, 280, 405
SetI ASST 4 cut(s) 173, 229, 366, 371
SfaNI GCATC 1 cut(s) 147
Sse9I AATT 2 cut(s) 464, 482
SsiI CCGC 5 cut(s) 95, 323, 352, 355, 379
SspMI CTAG 2 cut(s) 98, 207
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 4 cut(s) 81, 240, 301, 403
TasI AATT 2 cut(s) 464, 482
TauI GCSGC 3 cut(s) 325, 355, 382
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 94, 284
TspGWI ACGGA 1 cut(s) 237
XceI RCATGY 1 cut(s) 197
XspI CTAG 2 cut(s) 98, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.