Rmu_ssc0000319.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000319.1
OG0017248
Physical Location & Seq
Reverse (-)
12697 .. 13818
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000319.1_g000004.1.cds

Sequence Viewer

Length: 1122 bp
atggccgaagaagctcaagaccaccaccaaaaccaccaccctctgccgcttctagaagctctaagaaaagcctccaaagccctccaaaacaaccccattgccacaatctacaacaaccacgacacaaacgccgccattgaagctcttctagagctcgcaacacaagccgacccgatcatctccaccgaccctagtctcttcaacctcgctcagttactcaacaaccttaaaatcctcctcgaaaatctcgaaaagttgcaaagctacggcctccggtccctcctccgccgccaaatcaccaactacaacatctcccaagtcgggtacgctattgaagctgaaatccaagcatatgttgatcgaaaacacgtagagagcttcgtggaaacgatgaatgagtcggaggaagacggcgaaaaggtagaggctttggtgggtttagagaccagattgtccggaggttttgataaggagtaccaggagttgattttgaaagccaaggtattttccatcgttgaatttataatctgtgagtcactgctttcgaattgggttaaagaccaagctgctgctgttgctctagctctggttcagttcaataaggacgtttttgtggggttggtgttaatgggtccgattattggagcgttgatttcaatgggttcgtgtcgttcgattcaagtccttacttcgctggtcaggattatccgaacccctttggtggatgacatcaatgaagaaataccaagaattatacgacttttgagctccgaggagttgaagatgaaagcggtagcgatgaactgcgttttcgaaatcggaatcttggcgagagaggaagtgattgaggccatgcttggagaggacttggtgaagaagctgatggatttgcagaggttggaggtgatgggtgagtccaaagaggatgaaggtgttgggaagtttccatttttggggtgtgttgctgcttttgcagtgcaagtagaagttggggaagggttggagaagactgagaagagagcagtgaagttggaaatactgaagagagttagagaagcctctgtttctgaagcagagtctgccactgttgtttcagaggtgctatggggctcttcaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

41.37

Weight (kDa)

4.84

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28800
malus_domestica MD15G1128100.v1.1
prunus_persica Prupe.1G483400_v2.0.a1
pyrus_communis pycom15g11530
rosa_chinensis RchiOBHm_Chr6g0297551
rosa_laevigata RLG00000011584
rosa_multiflora Rmu_ssc0000319.1_g000004
rosa_roxburghii Rroxscaffold_7G00170370
rosa_rugosa Rorug06G0273500
rosa_samantha Rh6AG384500 Rh6BG392600 Rh6DG385000
rosa_wichuraiana Rw6G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 524
AasI GACNNNNNNGTC 1 cut(s) 451
AccIII TCCGGA 1 cut(s) 455
AciI CCGC 5 cut(s) 47, 132, 286, 289, 791
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 1061, 1089
AfaI GTAC 2 cut(s) 326, 476
AfiI CCNNNNNNNGG 4 cut(s) 321, 641, 721, 953
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 9 cut(s) 140, 202, 335, 493, 518, 598, 657, 680, 781
AjnI CCWGG 1 cut(s) 477
Alw21I GWGCWC 2 cut(s) 156, 770
Alw26I GTCTC 2 cut(s) 200, 437
AlwNI CAGNNNCTG 1 cut(s) 1079
Aor13HI TCCGGA 1 cut(s) 455
AoxI GGCC 3 cut(s) 3, 268, 849
ApeKI GCWGC 3 cut(s) 566, 569, 965
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 276, 632
AsuHPI GGTGA 5 cut(s) 289, 883, 916, 923, 1107
AsuII TTCGAA 2 cut(s) 545, 813
AvaII GGWCC 2 cut(s) 276, 632
BanII GRGCYC 3 cut(s) 156, 770, 1112
BbsI GAAGAC 2 cut(s) 414, 1013
Bbv12I GWGCWC 2 cut(s) 156, 770
BbvI GCAGC 3 cut(s) 553, 556, 952
BccI CCATC 3 cut(s) 518, 877, 901
BceAI ACGGC 2 cut(s) 283, 427
BciT130I CCWGG 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 200, 437
BfaI CTAG 4 cut(s) 53, 149, 192, 581
BisI GCNGC 6 cut(s) 47, 132, 289, 567, 570, 966
BlsI GCNGC 6 cut(s) 48, 133, 290, 568, 571, 967
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 2 cut(s) 276, 632
BmgT120I GGNCC 2 cut(s) 276, 632
BmiI GGNNCC 2 cut(s) 278, 633
BmrFI CCNGG 1 cut(s) 479
BoxI GACNNNNGTC 1 cut(s) 192
BpiI GAAGAC 2 cut(s) 414, 1013
Bpu14I TTCGAA 2 cut(s) 545, 813
BsaAI YACGTR 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 498, 771
BsaWI WCCGGW 2 cut(s) 273, 455
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 641, 721, 953
Bse3DI GCAATG 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 455
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 2 cut(s) 498, 771
BseGI GGATG 2 cut(s) 730, 931
BseLI CCNNNNNNNGG 4 cut(s) 321, 641, 721, 953
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 224, 1002
BseRI GAGGAG 3 cut(s) 227, 272, 788
BseXI GCAGC 3 cut(s) 553, 556, 952
BshFI GGCC 3 cut(s) 5, 270, 851
BsiHKAI GWGCWC 2 cut(s) 156, 770
BsiSI CCGG 2 cut(s) 274, 456
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 4 cut(s) 321, 641, 721, 953
BsmAI GTCTC 2 cut(s) 200, 437
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 3 cut(s) 5, 270, 851
Bso31I GGTCTC 1 cut(s) 437
Bsp119I TTCGAA 2 cut(s) 545, 813
Bsp1286I GDGCHC 3 cut(s) 156, 770, 1112
Bsp13I TCCGGA 1 cut(s) 455
Bsp143I GATC 2 cut(s) 174, 358
BspACI CCGC 5 cut(s) 47, 132, 286, 289, 791
BspANI GGCC 3 cut(s) 5, 270, 851
BspCNI CTCAG 2 cut(s) 223, 1003
BspEI TCCGGA 1 cut(s) 455
BspLI GGNNCC 2 cut(s) 278, 633
BspQI GCTCTTC 2 cut(s) 150, 1117
BspT104I TTCGAA 2 cut(s) 545, 813
BspTNI GGTCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 498, 771
BssMI GATC 2 cut(s) 174, 358
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 1 cut(s) 1087
Bst6I CTCTTC 5 cut(s) 150, 203, 1010, 1037, 1117
BstAPI GCANNNNNTGC 1 cut(s) 1079
BstBAI YACGTR 1 cut(s) 370
BstBI TTCGAA 2 cut(s) 545, 813
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 3 cut(s) 62, 210, 1011
BstF5I GGATG 2 cut(s) 730, 931
BstKTI GATC 2 cut(s) 177, 361
BstMAI GTCTC 2 cut(s) 200, 437
BstMBI GATC 2 cut(s) 174, 358
BstMWI GCNNNNNNNGC 8 cut(s) 11, 77, 140, 164, 335, 575, 971, 1079
BstNI CCWGG 1 cut(s) 479
BstPAI GACNNNNGTC 1 cut(s) 192
BstSCI CCNGG 1 cut(s) 477
BstV1I GCAGC 3 cut(s) 553, 556, 952
BstV2I GAAGAC 2 cut(s) 414, 1013
BsuRI GGCC 3 cut(s) 5, 270, 851
BtgZI GCGATG 1 cut(s) 812
BtsCI GGATG 2 cut(s) 730, 931
BtsI GCAGTG 3 cut(s) 536, 981, 1029
BtsIMutI CAGTG 4 cut(s) 536, 981, 1029, 1083
Cac8I GCNNGC 1 cut(s) 156
CaiI CAGNNNCTG 1 cut(s) 1079
Cfr13I GGNCC 2 cut(s) 276, 632
Csp6I GTAC 2 cut(s) 325, 475
CviAII CATG 1 cut(s) 853
CviQI GTAC 2 cut(s) 325, 475
DdeI CTNAG 3 cut(s) 62, 210, 1011
DpnI GATC 2 cut(s) 176, 360
DpnII GATC 2 cut(s) 174, 358
DrdI GACNNNNNNGTC 1 cut(s) 451
DseDI GACNNNNNNGTC 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 5 cut(s) 150, 203, 1010, 1037, 1117
EarI CTCTTC 5 cut(s) 150, 203, 1010, 1037, 1117
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 2 cut(s) 154, 768
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 3 cut(s) 156, 770, 1112
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 2 cut(s) 276, 632
Eco53kI GAGCTC 2 cut(s) 154, 768
Eco57I CTGAAG 2 cut(s) 1061, 1089
EcoICRI GAGCTC 2 cut(s) 154, 768
EcoRII CCWGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 3 cut(s) 156, 770, 1112
ErhI CCWWGG 1 cut(s) 498
FaeI CATG 1 cut(s) 856
FaiI YATR 6 cut(s) 352, 354, 524, 755, 854, 1105
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 852
FauNDI CATATG 1 cut(s) 352
Fnu4HI GCNGC 6 cut(s) 47, 132, 289, 567, 570, 966
FokI GGATG 2 cut(s) 737, 938
FriOI GRGCYC 3 cut(s) 156, 770, 1112
Fsp4HI GCNGC 6 cut(s) 47, 132, 289, 567, 570, 966
FspBI CTAG 4 cut(s) 53, 149, 192, 581
GluI GCNGC 6 cut(s) 47, 132, 289, 567, 570, 966
HaeIII GGCC 3 cut(s) 5, 270, 851
HapII CCGG 2 cut(s) 274, 456
Hin1II CATG 1 cut(s) 856
HinfI GANTC 6 cut(s) 398, 533, 676, 822, 914, 1076
HpaII CCGG 2 cut(s) 274, 456
HphI GGTGA 5 cut(s) 289, 883, 916, 923, 1107
Hpy188I TCNGA 7 cut(s) 403, 636, 710, 772, 821, 1069, 1096
Hpy188III TCNNGA 6 cut(s) 17, 53, 149, 248, 456, 700
HpyAV CCTTC 2 cut(s) 923, 989
HpyCH4III ACNGT 1 cut(s) 1087
HpyCH4IV ACGT 2 cut(s) 369, 606
HpyCH4V TGCA 4 cut(s) 259, 892, 974, 979
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 77, 140, 164, 335, 575, 971, 1079
HpyF3I CTNAG 3 cut(s) 62, 210, 1011
HpySE526I ACGT 2 cut(s) 369, 606
Hsp92II CATG 1 cut(s) 856
Kpn2I TCCGGA 1 cut(s) 455
Kzo9I GATC 2 cut(s) 174, 358
LguI GCTCTTC 2 cut(s) 150, 1117
LmnI GCTCC 2 cut(s) 644, 773
LpnPI CCDG 8 cut(s) 287, 460, 464, 469, 491, 572, 680, 685
Lsp1109I GCAGC 3 cut(s) 553, 556, 952
MaeI CTAG 4 cut(s) 53, 149, 192, 581
MaeII ACGT 2 cut(s) 369, 606
MaeIII GTNAC 2 cut(s) 213, 534
MalI GATC 2 cut(s) 176, 360
MboI GATC 2 cut(s) 174, 358
MhlI GDGCHC 3 cut(s) 156, 770, 1112
MluCI AATT 3 cut(s) 518, 547, 750
MlyI GAGTC 4 cut(s) 407, 542, 923, 1085
MmeI TCCRAC 4 cut(s) 381, 879, 981, 1011
MroI TCCGGA 1 cut(s) 455
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 3 cut(s) 228, 555, 626
MspI CCGG 2 cut(s) 274, 456
MspR9I CCNGG 1 cut(s) 479
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 8 cut(s) 11, 77, 140, 164, 335, 575, 971, 1079
NdeI CATATG 1 cut(s) 352
NdeII GATC 2 cut(s) 174, 358
NlaIII CATG 1 cut(s) 856
NlaIV GGNNCC 2 cut(s) 278, 633
NmuCI GTSAC 1 cut(s) 534
NspV TTCGAA 2 cut(s) 545, 813
PciSI GCTCTTC 2 cut(s) 150, 1117
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 671
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 676, 822
PkrI GCNGC 6 cut(s) 48, 133, 290, 568, 571, 967
PleI GAGTC 4 cut(s) 406, 541, 922, 1084
PpsI GAGTC 4 cut(s) 406, 541, 922, 1084
Ppu21I YACGTR 1 cut(s) 370
PshAI GACNNNNGTC 1 cut(s) 192
PsiI TTATAA 1 cut(s) 524
Psp124BI GAGCTC 2 cut(s) 156, 770
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 2 cut(s) 278, 633
PspPI GGNCC 2 cut(s) 276, 632
PstNI CAGNNNCTG 1 cut(s) 1079
RsaI GTAC 2 cut(s) 326, 476
RsaNI GTAC 2 cut(s) 325, 475
SacI GAGCTC 2 cut(s) 156, 770
SapI GCTCTTC 2 cut(s) 150, 1117
SaqAI TTAA 3 cut(s) 228, 555, 626
SatI GCNGC 6 cut(s) 47, 132, 289, 567, 570, 966
Sau3AI GATC 2 cut(s) 174, 358
Sau96I GGNCC 2 cut(s) 276, 632
SchI GAGTC 4 cut(s) 407, 542, 923, 1085
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 3 cut(s) 156, 770, 1112
SfuI TTCGAA 2 cut(s) 545, 813
SinI GGWCC 2 cut(s) 276, 632
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 3 cut(s) 518, 547, 750
SsiI CCGC 5 cut(s) 47, 132, 286, 289, 791
SspMI CTAG 4 cut(s) 53, 149, 192, 581
SstI GAGCTC 2 cut(s) 156, 770
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 1 cut(s) 1087
TaiI ACGT 2 cut(s) 372, 609
TaqI TCGA 6 cut(s) 240, 249, 361, 545, 674, 813
TasI AATT 3 cut(s) 518, 547, 750
TauI GCSGC 3 cut(s) 49, 134, 291
TfiI GAWTC 2 cut(s) 676, 822
Tru1I TTAA 3 cut(s) 228, 555, 626
Tru9I TTAA 3 cut(s) 228, 555, 626
TscAI CASTG 4 cut(s) 543, 981, 1029, 1090
TseFI GTSAC 1 cut(s) 534
TseI GCWGC 3 cut(s) 566, 569, 965
Tsp45I GTSAC 1 cut(s) 534
TspDTI ATGAA 5 cut(s) 407, 750, 800, 815, 942
TspRI CASTG 4 cut(s) 543, 981, 1029, 1090
VpaK11BI GGWCC 2 cut(s) 276, 632
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 2 cut(s) 52, 148
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 4 cut(s) 53, 149, 192, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.