Rroxscaffold_7G00170370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017248
Physical Location & Seq
Forward (+)
10825608 .. 10827965
2358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170370.1

Sequence Viewer

Length: 1407 bp
ATGGCCGAAGAAGCTCAAGACCACCACCCTCTGCCGCTTCTAGAAGCTCTGAGAAAAGCCTCCAAAGCCCTCCAAAACAATCCCATTGCCACAATCTACAACAACCACGACACAAACGCAGCCATTGAAGCTCTTCTAGAGCTCGCAACACAAGCCGACCCGATCATCTCCACCGACCCTAGTCTCTTCAACCTCGCTCAGTTACTCAACAACCTTAAAACCCTCCTCGAAAATCTCGAAAAGTTGCAAAGCTACGGCCTCCGGTCGCTCCTCCGCCGCCAAATCACCAACCACAACATCTCCCAAGTCGGGTACGCTATTGAAGCTGAAATCCAAGCATATGTTGATCGAAAACACGTAGAGAGCTTCGTGGAAACGATGAATGAGTCGGAGGAAGACGGCGAAAAGGTAGAGGCTTTGGTGGGTTTAGAGACCAGATTGTCCAGAGGTTTTGATAAGGAGTACCAGGAGTTGATTTTGAAAGCCAAGGTATTTTCCATCGTTGAATTTATAATCTGTGAGTCACTGTTTTCGAATTGGGTTAAAGACCAAGCTGCTGCTGTTGCTCTAGCTCTGGTTCAGTTCAATAAGGACGTTTTTGTGGGGTTGGTGTTAATGGGTCCGATTATTGGAGCTTTGATTTCAATGGGTTCGTGTCGTTCGATTCAAGTCCTTACTTCGCTGGTCAGGATTATCCGAACCCCTTTGGTGGATGACATCAATGAAGAAATACCAAGAATTATACGACTTTTGAGCGCCGAGGAGTTGAAGATGAAAGCGGTAGCGATGAATTGCGTTTTCGAAATCGGAATCTTGGCGAGAGAGGAAGTGATTGAGGCCATGCTTGGAGAGGACTTGGTGAAGAAGCTGATGGATTTGCAGAGGATGGAGGTGTTGGGTGAGTCCAAAGAGGATGAAGGTGTTGGGAAGTTTCCATTTTTGGGGTGTGTTGCTGCTTTTGCAGTGCAAGTTGAAGTTGGGGAAGGGTTGGAGAAGACTGAGAAGAGAGCAGTGAAGTTGGAAATACTGAAGAGAGTTAGAGAAGCCTCTGTTTCTGAAGCAGAGTCTGCCACTGTTGTTTCAGAGCCTCCCCAACAATTCTGCTGTCGCCGTCACCCTCTTGGAAACCATCGCCGTCTCTATAGAAACTACCACCCCCATAGAGACCACTACGCCATTGTAGAGACCACCGCCACCCAAGTTCCTATGGGAACAACGACCACTACCATCAAGGACGATTGCATAATTAGATTTGATGCCCGACAACTCAAGTCGCCCGATGAGCAAGACGGATCCACCATCACCACCATCGGATCGATGCAATCCCGAGCAAACCAACTTGACCAAACATCGCCGCAAGGCTGCATGCCGAACACCGATACCCTCCTTCGCATCCATCCTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

468

Amino Acids

52.28

Weight (kDa)

5.24

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28800
malus_domestica MD15G1128100.v1.1
prunus_persica Prupe.1G483400_v2.0.a1
pyrus_communis pycom15g11530
rosa_chinensis RchiOBHm_Chr6g0297551
rosa_laevigata RLG00000011584
rosa_multiflora Rmu_ssc0000319.1_g000004
rosa_roxburghii Rroxscaffold_7G00170370
rosa_rugosa Rorug06G0273500
rosa_samantha Rh6AG384500 Rh6BG392600 Rh6DG385000
rosa_wichuraiana Rw6G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AasI GACNNNNNNGTC 1 cut(s) 439
AciI CCGC 6 cut(s) 35, 274, 277, 779, 1191, 1355
AclWI GGATC 3 cut(s) 1287, 1300, 1321
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 2 cut(s) 1049, 1077
AfaI GTAC 2 cut(s) 314, 464
AfiI CCNNNNNNNGG 4 cut(s) 309, 629, 709, 941
AflIII ACRYGT 1 cut(s) 355
AjnI CCWGG 1 cut(s) 465
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 5 cut(s) 188, 425, 1142, 1158, 1178
AlwI GGATC 3 cut(s) 1287, 1300, 1321
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 1 cut(s) 1326
AoxI GGCC 3 cut(s) 3, 256, 837
ApeKI GCWGC 5 cut(s) 119, 554, 557, 953, 1362
ApoI RAATTY 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 758
AspS9I GGNCC 1 cut(s) 620
AsuHPI GGTGA 5 cut(s) 277, 871, 911, 1106, 1294
AsuII TTCGAA 2 cut(s) 533, 801
AvaI CYCGRG 1 cut(s) 1326
AvaII GGWCC 1 cut(s) 620
BamHI GGATCC 1 cut(s) 1292
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 2 cut(s) 402, 1001
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 5 cut(s) 131, 541, 544, 940, 1349
BccI CCATC 8 cut(s) 506, 865, 880, 1137, 1235, 1307, 1316, 1404
BceAI ACGGC 4 cut(s) 271, 415, 1095, 1119
BciT130I CCWGG 1 cut(s) 467
BcoDI GTCTC 5 cut(s) 188, 425, 1142, 1158, 1178
BfaI CTAG 5 cut(s) 41, 137, 180, 569, 1405
BfmI CTRYAG 1 cut(s) 1141
BfoI RGCGCY 1 cut(s) 759
BisI GCNGC 8 cut(s) 35, 120, 277, 555, 558, 954, 1355, 1363
BlsI GCNGC 8 cut(s) 36, 121, 278, 556, 559, 955, 1356, 1364
Bme1390I CCNGG 1 cut(s) 467
Bme18I GGWCC 1 cut(s) 620
BmeT110I CYCGRG 1 cut(s) 1326
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 2 cut(s) 621, 1294
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 3 cut(s) 1246, 1308, 1401
BoxI GACNNNNGTC 1 cut(s) 180
BpiI GAAGAC 2 cut(s) 402, 1001
Bpu14I TTCGAA 2 cut(s) 533, 801
BpuEI CTTGAG 1 cut(s) 1253
Bsa29I ATCGAT 1 cut(s) 1316
BsaAI YACGTR 1 cut(s) 358
BsaI GGTCTC 3 cut(s) 425, 1158, 1178
BsaJI CCNNGG 2 cut(s) 486, 759
BsaWI WCCGGW 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 629, 709, 941
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 467
BseCI ATCGAT 1 cut(s) 1316
BseDI CCNNGG 2 cut(s) 486, 759
BseGI GGATG 5 cut(s) 718, 891, 919, 1392, 1396
BseLI CCNNNNNNNGG 4 cut(s) 309, 629, 709, 941
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 3 cut(s) 41, 212, 990
BseRI GAGGAG 3 cut(s) 215, 260, 776
BseXI GCAGC 5 cut(s) 131, 541, 544, 940, 1349
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 3 cut(s) 5, 258, 839
BshVI ATCGAT 1 cut(s) 1316
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 1326
BsiSI CCGG 1 cut(s) 262
BslI CCNNNNNNNGG 4 cut(s) 309, 629, 709, 941
BsmAI GTCTC 5 cut(s) 188, 425, 1142, 1158, 1178
BsmBI CGTCTC 1 cut(s) 1142
BsnI GGCC 3 cut(s) 5, 258, 839
Bso31I GGTCTC 3 cut(s) 425, 1158, 1178
BsoBI CYCGRG 1 cut(s) 1326
Bsp119I TTCGAA 2 cut(s) 533, 801
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 4 cut(s) 162, 346, 1292, 1313
BspACI CCGC 6 cut(s) 35, 274, 277, 779, 1191, 1355
BspANI GGCC 3 cut(s) 5, 258, 839
BspCNI CTCAG 3 cut(s) 42, 211, 991
BspDI ATCGAT 1 cut(s) 1316
BspLI GGNNCC 2 cut(s) 621, 1294
BspPI GGATC 3 cut(s) 1287, 1300, 1321
BspQI GCTCTTC 1 cut(s) 138
BspT104I TTCGAA 2 cut(s) 533, 801
BspTNI GGTCTC 3 cut(s) 425, 1158, 1178
BsrDI GCAATG 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 486, 759
BssMI GATC 4 cut(s) 162, 346, 1292, 1313
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 2 cut(s) 528, 1075
Bst6I CTCTTC 4 cut(s) 138, 191, 998, 1025
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstBAI YACGTR 1 cut(s) 358
BstBI TTCGAA 2 cut(s) 533, 801
BstC8I GCNNGC 2 cut(s) 144, 1367
BstDEI CTNAG 3 cut(s) 50, 198, 999
BstF5I GGATG 5 cut(s) 718, 891, 919, 1392, 1396
BstH2I RGCGCY 1 cut(s) 759
BstHHI GCGC 1 cut(s) 758
BstKTI GATC 4 cut(s) 165, 349, 1295, 1316
BstMAI GTCTC 5 cut(s) 188, 425, 1142, 1158, 1178
BstMBI GATC 4 cut(s) 162, 346, 1292, 1313
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 9 cut(s) 11, 65, 128, 152, 323, 563, 959, 1067, 1282
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 1369
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 465
BstSFI CTRYAG 1 cut(s) 1141
BstV1I GCAGC 5 cut(s) 131, 541, 544, 940, 1349
BstV2I GAAGAC 2 cut(s) 402, 1001
BstX2I RGATCY 1 cut(s) 1292
BstYI RGATCY 1 cut(s) 1292
Bsu15I ATCGAT 1 cut(s) 1316
BsuRI GGCC 3 cut(s) 5, 258, 839
BsuTUI ATCGAT 1 cut(s) 1316
BtgZI GCGATG 3 cut(s) 800, 1115, 1335
BtsCI GGATG 5 cut(s) 718, 891, 919, 1392, 1396
BtsI GCAGTG 2 cut(s) 969, 1017
BtsIMutI CAGTG 4 cut(s) 524, 969, 1017, 1071
Cac8I GCNNGC 2 cut(s) 144, 1367
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 1 cut(s) 758
Cfr13I GGNCC 1 cut(s) 620
ClaI ATCGAT 1 cut(s) 1316
Csp6I GTAC 2 cut(s) 313, 463
CviAII CATG 2 cut(s) 841, 1366
CviQI GTAC 2 cut(s) 313, 463
DdeI CTNAG 3 cut(s) 50, 198, 999
DpnI GATC 4 cut(s) 164, 348, 1294, 1315
DpnII GATC 4 cut(s) 162, 346, 1292, 1313
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 138, 191, 998, 1025
EarI CTCTTC 4 cut(s) 138, 191, 998, 1025
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 3 cut(s) 425, 1158, 1178
Eco47I GGWCC 1 cut(s) 620
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 1049, 1077
Eco88I CYCGRG 1 cut(s) 1326
EcoICRI GAGCTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 1142
FaeI CATG 2 cut(s) 844, 1369
FatI CATG 2 cut(s) 840, 1365
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 8 cut(s) 35, 120, 277, 555, 558, 954, 1355, 1363
FokI GGATG 5 cut(s) 725, 898, 926, 1379, 1383
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 8 cut(s) 35, 120, 277, 555, 558, 954, 1355, 1363
FspBI CTAG 5 cut(s) 41, 137, 180, 569, 1405
GlaI GCGC 1 cut(s) 757
GluI GCNGC 8 cut(s) 35, 120, 277, 555, 558, 954, 1355, 1363
HaeII RGCGCY 1 cut(s) 759
HaeIII GGCC 3 cut(s) 5, 258, 839
HapII CCGG 1 cut(s) 262
HhaI GCGC 1 cut(s) 758
Hin1II CATG 2 cut(s) 844, 1369
Hin6I GCGC 1 cut(s) 756
HinP1I GCGC 1 cut(s) 756
HinfI GANTC 6 cut(s) 386, 521, 664, 810, 902, 1064
HpaII CCGG 1 cut(s) 262
HphI GGTGA 5 cut(s) 277, 871, 911, 1106, 1294
Hpy188I TCNGA 8 cut(s) 51, 391, 624, 698, 809, 1057, 1084, 1313
Hpy188III TCNNGA 7 cut(s) 17, 41, 137, 236, 444, 688, 1326
HpyAV CCTTC 3 cut(s) 911, 977, 1397
HpyCH4III ACNGT 2 cut(s) 528, 1075
HpyCH4IV ACGT 2 cut(s) 357, 594
HpyCH4V TGCA 7 cut(s) 247, 880, 962, 967, 1242, 1321, 1365
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 65, 128, 152, 323, 563, 959, 1067, 1282
HpyF3I CTNAG 3 cut(s) 50, 198, 999
HpySE526I ACGT 2 cut(s) 357, 594
Hsp92II CATG 2 cut(s) 844, 1369
HspAI GCGC 1 cut(s) 756
Kzo9I GATC 4 cut(s) 162, 346, 1292, 1313
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 273, 632
LpnPI CCDG 8 cut(s) 275, 448, 452, 457, 479, 560, 668, 673
Lsp1109I GCAGC 5 cut(s) 131, 541, 544, 940, 1349
LweI GCATC 3 cut(s) 1246, 1308, 1401
MaeI CTAG 5 cut(s) 41, 137, 180, 569, 1405
MaeII ACGT 2 cut(s) 357, 594
MaeIII GTNAC 3 cut(s) 201, 522, 1112
MalI GATC 4 cut(s) 164, 348, 1294, 1315
MboI GATC 4 cut(s) 162, 346, 1292, 1313
MflI RGATCY 1 cut(s) 1292
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 6 cut(s) 506, 535, 738, 790, 1097, 1245
MlyI GAGTC 4 cut(s) 395, 530, 911, 1073
MmeI TCCRAC 3 cut(s) 369, 969, 999
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 3 cut(s) 216, 543, 614
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 467
MvaI CCWGG 1 cut(s) 467
MwoI GCNNNNNNNGC 9 cut(s) 11, 65, 128, 152, 323, 563, 959, 1067, 1282
NdeI CATATG 1 cut(s) 340
NdeII GATC 4 cut(s) 162, 346, 1292, 1313
NlaIII CATG 2 cut(s) 844, 1369
NlaIV GGNNCC 2 cut(s) 621, 1294
NmeAIII GCCGAG 1 cut(s) 784
NmuCI GTSAC 2 cut(s) 522, 1112
NspI RCATGY 1 cut(s) 1369
NspV TTCGAA 2 cut(s) 533, 801
PaeI GCATGC 1 cut(s) 1369
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 659
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 664, 810
PkrI GCNGC 8 cut(s) 36, 121, 278, 556, 559, 955, 1356, 1364
PleI GAGTC 4 cut(s) 394, 529, 910, 1072
PpsI GAGTC 4 cut(s) 394, 529, 910, 1072
Ppu21I YACGTR 1 cut(s) 358
PshAI GACNNNNGTC 1 cut(s) 180
PsiI TTATAA 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 2 cut(s) 621, 1294
PspPI GGNCC 1 cut(s) 620
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 1292
RsaI GTAC 2 cut(s) 314, 464
RsaNI GTAC 2 cut(s) 313, 463
SacI GAGCTC 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 3 cut(s) 216, 543, 614
SatI GCNGC 8 cut(s) 35, 120, 277, 555, 558, 954, 1355, 1363
Sau3AI GATC 4 cut(s) 162, 346, 1292, 1313
Sau96I GGNCC 1 cut(s) 620
SchI GAGTC 4 cut(s) 395, 530, 911, 1073
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 3 cut(s) 1246, 1308, 1401
SfcI CTRYAG 1 cut(s) 1141
SfuI TTCGAA 2 cut(s) 533, 801
SinI GGWCC 1 cut(s) 620
SmlI CTYRAG 2 cut(s) 15, 1268
SmoI CTYRAG 2 cut(s) 15, 1268
SphI GCATGC 1 cut(s) 1369
Sse9I AATT 6 cut(s) 506, 535, 738, 790, 1097, 1245
SsiI CCGC 6 cut(s) 35, 274, 277, 779, 1191, 1355
SspMI CTAG 5 cut(s) 41, 137, 180, 569, 1405
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 2 cut(s) 528, 1075
TaiI ACGT 2 cut(s) 360, 597
TaqI TCGA 7 cut(s) 228, 237, 349, 533, 662, 801, 1316
TasI AATT 6 cut(s) 506, 535, 738, 790, 1097, 1245
TauI GCSGC 3 cut(s) 37, 279, 1357
TfiI GAWTC 2 cut(s) 664, 810
Tru1I TTAA 3 cut(s) 216, 543, 614
Tru9I TTAA 3 cut(s) 216, 543, 614
TscAI CASTG 4 cut(s) 531, 969, 1017, 1078
TseFI GTSAC 2 cut(s) 522, 1112
TseI GCWGC 5 cut(s) 119, 554, 557, 953, 1362
Tsp45I GTSAC 2 cut(s) 522, 1112
TspDTI ATGAA 5 cut(s) 395, 738, 788, 803, 930
TspGWI ACGGA 1 cut(s) 1305
TspRI CASTG 4 cut(s) 531, 969, 1017, 1078
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 1 cut(s) 506
XbaI TCTAGA 2 cut(s) 40, 136
XceI RCATGY 1 cut(s) 1369
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 5 cut(s) 41, 137, 180, 569, 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.