RLG00000011584

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017248
Physical Location & Seq
Forward (+)
10709990 .. 10711099
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011584

Sequence Viewer

Length: 1110 bp
ATGGCCGAAGAAGCTCAAGACCACCACCCTCTGCCGCTTCTAGAAGCTCTAAGAAAAGCCTCCAAAGCCCTCCAAAACAACCCCATTGCCACAATCTACAACAACCACGACACAAACGCCGCCATTGAAGCTCTTCTAGAGCTCGCAACACAAGCCGACCCGATCATCTCCACCGACCCTAGTCTCTTCAACCTCGCTCAGTTGCTCAACAACCTTAAAACCCTCCTCGAAAATCTCGAAAAGTTGCAAAGCTACGGCCTCCGGTCTCTCCTCCACCGCCAAATCACCAACTACAACATCTCCCAAGTCGGGTACGCCATTGAAGCTGAAATCCAAGCATATGTTGATCGAAAACACGTAGAGAGCTTCGTGGAAACGATGAATGAGTCGGAGGAAGACGGCGAAAAGGTAGAGGTTTTGGTGCGTTTAGAGACCAGATTGTCCAGAGGTTTTGATAAGGAGTACCAGGAGTTGATTTTGAAAGCCAAGGTATTTTCCATCGTTGAATTTATAATCTGTGAGTCACTGTTTTCGAATTGGGTTAAAGACCAAGCTGCTGCTGTCGCTCTAGCTCTGGTTCAGTTCAATAAGGACGTTTTTGTGGGGTTGGTGTTAATGGGTCCGATTATTGGAGCTTTGATTTCAATGGGTTCGTGTCGTTCGATTCAAGTCCTTACTTCGCTGGTCAGGATTATCCGAACCCCTTTGGTGGATGACATCAATGAAGAAATACCAAGAATTATACGACTTTTGAGCGCCGAGGAGTTGAAGATGAAAGCGGTAGCGATGAATTGCGTTTTCGAAATCGGAATCTTGGCGAGAGAGGAAGTGATTGAGGCCATGCTTGGAGAGGACTTGGTGAAGAAGCTGATGGATTTGCAGAGGTTGGAGGTGATGGGTGAGTCCAAAGAGGATGAAGGTGTTGGGAAGTTTCCATTTTTGGGGTGTGTTGCTGCTTTTGCAGTGCAAGTTGAAGTTGGCGAAGGGTTGGAGAAGACTGAGAAGAGAGCAGTGAAGTTGGAAATACTGAAGGGGGTTAGAGAAGCCTCTGTTTCTGAAGCAGAGGCTGCCACTGTTGTTTCAGAGGTGCTATGGGGCTCTTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

370

Amino Acids

40.95

Weight (kDa)

4.8

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28800
malus_domestica MD15G1128100.v1.1
prunus_persica Prupe.1G483400_v2.0.a1
pyrus_communis pycom15g11530
rosa_chinensis RchiOBHm_Chr6g0297551
rosa_laevigata RLG00000011584
rosa_multiflora Rmu_ssc0000319.1_g000004
rosa_roxburghii Rroxscaffold_7G00170370
rosa_rugosa Rorug06G0273500
rosa_samantha Rh6AG384500 Rh6BG392600 Rh6DG385000
rosa_wichuraiana Rw6G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AasI GACNNNNNNGTC 1 cut(s) 439
AciI CCGC 4 cut(s) 35, 120, 277, 779
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 2 cut(s) 1049, 1077
AfaI GTAC 2 cut(s) 314, 464
AfiI CCNNNNNNNGG 4 cut(s) 309, 629, 709, 941
AflIII ACRYGT 1 cut(s) 355
AjnI CCWGG 1 cut(s) 465
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 188, 270, 425
AlwNI CAGNNNCTG 1 cut(s) 1067
AoxI GGCC 3 cut(s) 3, 256, 837
ApeKI GCWGC 4 cut(s) 554, 557, 953, 1067
ApoI RAATTY 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 758
AspS9I GGNCC 1 cut(s) 620
AsuHPI GGTGA 5 cut(s) 277, 871, 904, 911, 1095
AsuII TTCGAA 2 cut(s) 533, 801
AvaII GGWCC 1 cut(s) 620
BanII GRGCYC 2 cut(s) 144, 1100
BbsI GAAGAC 2 cut(s) 402, 1001
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 541, 544, 940, 1054
BccI CCATC 3 cut(s) 506, 865, 889
BceAI ACGGC 2 cut(s) 271, 415
BciT130I CCWGG 1 cut(s) 467
BcoDI GTCTC 3 cut(s) 188, 270, 425
BfaI CTAG 4 cut(s) 41, 137, 180, 569
BfoI RGCGCY 1 cut(s) 759
BisI GCNGC 6 cut(s) 35, 120, 555, 558, 954, 1068
BlsI GCNGC 6 cut(s) 36, 121, 556, 559, 955, 1069
Bme1390I CCNGG 1 cut(s) 467
Bme18I GGWCC 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 1 cut(s) 467
BoxI GACNNNNGTC 1 cut(s) 180
BpiI GAAGAC 2 cut(s) 402, 1001
Bpu14I TTCGAA 2 cut(s) 533, 801
BsaAI YACGTR 1 cut(s) 358
BsaI GGTCTC 2 cut(s) 270, 425
BsaJI CCNNGG 2 cut(s) 486, 759
BsaWI WCCGGW 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 629, 709, 941
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 486, 759
BseGI GGATG 2 cut(s) 718, 919
BseLI CCNNNNNNNGG 4 cut(s) 309, 629, 709, 941
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 212, 990
BseRI GAGGAG 3 cut(s) 215, 260, 776
BseXI GCAGC 4 cut(s) 541, 544, 940, 1054
BshFI GGCC 3 cut(s) 5, 258, 839
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 262
BslI CCNNNNNNNGG 4 cut(s) 309, 629, 709, 941
BsmAI GTCTC 3 cut(s) 188, 270, 425
BsnI GGCC 3 cut(s) 5, 258, 839
Bso31I GGTCTC 2 cut(s) 270, 425
Bsp119I TTCGAA 2 cut(s) 533, 801
Bsp1286I GDGCHC 2 cut(s) 144, 1100
Bsp143I GATC 2 cut(s) 162, 346
BspACI CCGC 4 cut(s) 35, 120, 277, 779
BspANI GGCC 3 cut(s) 5, 258, 839
BspCNI CTCAG 2 cut(s) 211, 991
BspLI GGNNCC 1 cut(s) 621
BspQI GCTCTTC 2 cut(s) 138, 1105
BspT104I TTCGAA 2 cut(s) 533, 801
BspTNI GGTCTC 2 cut(s) 270, 425
BsrDI GCAATG 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 486, 759
BssMI GATC 2 cut(s) 162, 346
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 2 cut(s) 528, 1075
Bst6I CTCTTC 4 cut(s) 138, 191, 998, 1105
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstBAI YACGTR 1 cut(s) 358
BstBI TTCGAA 2 cut(s) 533, 801
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 3 cut(s) 50, 198, 999
BstF5I GGATG 2 cut(s) 718, 919
BstH2I RGCGCY 1 cut(s) 759
BstHHI GCGC 1 cut(s) 758
BstKTI GATC 2 cut(s) 165, 349
BstMAI GTCTC 3 cut(s) 188, 270, 425
BstMBI GATC 2 cut(s) 162, 346
BstMWI GCNNNNNNNGC 8 cut(s) 11, 65, 128, 152, 323, 563, 959, 1067
BstNI CCWGG 1 cut(s) 467
BstPAI GACNNNNGTC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 465
BstV1I GCAGC 4 cut(s) 541, 544, 940, 1054
BstV2I GAAGAC 2 cut(s) 402, 1001
BsuRI GGCC 3 cut(s) 5, 258, 839
BtgZI GCGATG 1 cut(s) 800
BtsCI GGATG 2 cut(s) 718, 919
BtsI GCAGTG 2 cut(s) 969, 1017
BtsIMutI CAGTG 4 cut(s) 524, 969, 1017, 1071
Cac8I GCNNGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 1 cut(s) 758
Cfr13I GGNCC 1 cut(s) 620
Csp6I GTAC 2 cut(s) 313, 463
CviAII CATG 1 cut(s) 841
CviQI GTAC 2 cut(s) 313, 463
DdeI CTNAG 3 cut(s) 50, 198, 999
DpnI GATC 2 cut(s) 164, 348
DpnII GATC 2 cut(s) 162, 346
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 138, 191, 998, 1105
EarI CTCTTC 4 cut(s) 138, 191, 998, 1105
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 2 cut(s) 144, 1100
Eco31I GGTCTC 2 cut(s) 270, 425
Eco47I GGWCC 1 cut(s) 620
Eco53kI GAGCTC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 1049, 1077
EcoICRI GAGCTC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 2 cut(s) 144, 1100
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 1 cut(s) 844
FaiI YATR 6 cut(s) 340, 342, 512, 743, 842, 1093
FatI CATG 1 cut(s) 840
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 6 cut(s) 35, 120, 555, 558, 954, 1068
FokI GGATG 2 cut(s) 725, 926
FriOI GRGCYC 2 cut(s) 144, 1100
Fsp4HI GCNGC 6 cut(s) 35, 120, 555, 558, 954, 1068
FspBI CTAG 4 cut(s) 41, 137, 180, 569
GlaI GCGC 1 cut(s) 757
GluI GCNGC 6 cut(s) 35, 120, 555, 558, 954, 1068
HaeII RGCGCY 1 cut(s) 759
HaeIII GGCC 3 cut(s) 5, 258, 839
HapII CCGG 1 cut(s) 262
HhaI GCGC 1 cut(s) 758
Hin1II CATG 1 cut(s) 844
Hin6I GCGC 1 cut(s) 756
HinP1I GCGC 1 cut(s) 756
HinfI GANTC 5 cut(s) 386, 521, 664, 810, 902
HpaII CCGG 1 cut(s) 262
HphI GGTGA 5 cut(s) 277, 871, 904, 911, 1095
Hpy188I TCNGA 6 cut(s) 391, 624, 698, 809, 1057, 1084
Hpy188III TCNNGA 6 cut(s) 17, 41, 137, 236, 444, 688
HpyAV CCTTC 3 cut(s) 911, 977, 1024
HpyCH4III ACNGT 2 cut(s) 528, 1075
HpyCH4IV ACGT 2 cut(s) 357, 594
HpyCH4V TGCA 4 cut(s) 247, 880, 962, 967
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 65, 128, 152, 323, 563, 959, 1067
HpyF3I CTNAG 3 cut(s) 50, 198, 999
HpySE526I ACGT 2 cut(s) 357, 594
Hsp92II CATG 1 cut(s) 844
HspAI GCGC 1 cut(s) 756
Kzo9I GATC 2 cut(s) 162, 346
LguI GCTCTTC 2 cut(s) 138, 1105
LmnI GCTCC 1 cut(s) 632
LpnPI CCDG 8 cut(s) 275, 448, 452, 457, 479, 560, 668, 673
Lsp1109I GCAGC 4 cut(s) 541, 544, 940, 1054
MaeI CTAG 4 cut(s) 41, 137, 180, 569
MaeII ACGT 2 cut(s) 357, 594
MaeIII GTNAC 1 cut(s) 522
MalI GATC 2 cut(s) 164, 348
MboI GATC 2 cut(s) 162, 346
MhlI GDGCHC 2 cut(s) 144, 1100
MluCI AATT 4 cut(s) 506, 535, 738, 790
MlyI GAGTC 3 cut(s) 395, 530, 911
MmeI TCCRAC 4 cut(s) 369, 867, 969, 999
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 3 cut(s) 216, 543, 614
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 467
MvaI CCWGG 1 cut(s) 467
MwoI GCNNNNNNNGC 8 cut(s) 11, 65, 128, 152, 323, 563, 959, 1067
NdeI CATATG 1 cut(s) 340
NdeII GATC 2 cut(s) 162, 346
NlaIII CATG 1 cut(s) 844
NlaIV GGNNCC 1 cut(s) 621
NmeAIII GCCGAG 1 cut(s) 784
NmuCI GTSAC 1 cut(s) 522
NspV TTCGAA 2 cut(s) 533, 801
PciSI GCTCTTC 2 cut(s) 138, 1105
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 659
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 664, 810
PkrI GCNGC 6 cut(s) 36, 121, 556, 559, 955, 1069
PleI GAGTC 3 cut(s) 394, 529, 910
PpsI GAGTC 3 cut(s) 394, 529, 910
Ppu21I YACGTR 1 cut(s) 358
PshAI GACNNNNGTC 1 cut(s) 180
PsiI TTATAA 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 465
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 620
PstNI CAGNNNCTG 1 cut(s) 1067
RsaI GTAC 2 cut(s) 314, 464
RsaNI GTAC 2 cut(s) 313, 463
SacI GAGCTC 1 cut(s) 144
SapI GCTCTTC 2 cut(s) 138, 1105
SaqAI TTAA 3 cut(s) 216, 543, 614
SatI GCNGC 6 cut(s) 35, 120, 555, 558, 954, 1068
Sau3AI GATC 2 cut(s) 162, 346
Sau96I GGNCC 1 cut(s) 620
SchI GAGTC 3 cut(s) 395, 530, 911
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 2 cut(s) 144, 1100
SfuI TTCGAA 2 cut(s) 533, 801
SinI GGWCC 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 4 cut(s) 506, 535, 738, 790
SsiI CCGC 4 cut(s) 35, 120, 277, 779
SspMI CTAG 4 cut(s) 41, 137, 180, 569
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 2 cut(s) 528, 1075
TaiI ACGT 2 cut(s) 360, 597
TaqI TCGA 6 cut(s) 228, 237, 349, 533, 662, 801
TasI AATT 4 cut(s) 506, 535, 738, 790
TauI GCSGC 2 cut(s) 37, 122
TfiI GAWTC 2 cut(s) 664, 810
Tru1I TTAA 3 cut(s) 216, 543, 614
Tru9I TTAA 3 cut(s) 216, 543, 614
TscAI CASTG 4 cut(s) 531, 969, 1017, 1078
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 4 cut(s) 554, 557, 953, 1067
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 5 cut(s) 395, 738, 788, 803, 930
TspRI CASTG 4 cut(s) 531, 969, 1017, 1078
VpaK11BI GGWCC 1 cut(s) 620
XapI RAATTY 1 cut(s) 506
XbaI TCTAGA 2 cut(s) 40, 136
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 4 cut(s) 41, 137, 180, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.