MD15G1128100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017248
Physical Location & Seq
Forward (+)
9279581 .. 9280690
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1128100.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGGCCGAGGCCACGGAGGAGCAAGACAACCACCACGTTCATCCGCTACTAGAATCTCTGAAGAAAGCTTCCAAAGACCTACAGAGCAACCCTATTTCAATCATATACAACAACTACGACATCAACGCCGCCATTGAGGCACTTCTCGAGCTCGGAACCAAGGCCGACCCCATCATCTCCAGCGAGCCAAGTCTCTTCACCCTCAACCAGCTGCTCAGCAACCTCAAAACCCTTCTCGAAAAGCTCCAAAAGCTGCAGGGCTACGGCCTCCGGTCCCTCCTCCACCGCCAAGTCACCAATTACAAGATTTCCCAAATTGGGTACGCCGTGGAAGCGGAGGTTCAGGCGCACATCGATCAGAAGAACGTCTGGGGTTTCGTGAAAACGATGGAGGAGGATTCGGAGGACGATTGGAAAGTTAAGGCATTGGTGATTTTAGAGAACAGATTGAACCAGGGATTCGATAAAGATTACCAAGAACTAATTCTGAGAGCAAAGGTATTTTCAATTCTTGAATTTATTACTTGTGATTCAAGTTTTTCAAATCGGGTTCGAGACCGGGCTGCTCTCGCTGTTCTCGCTCTGGTTCAATTCAACAAAGATGTTTTTGTTGGATTGGTTTTAATGGGTCCGATCGTTGGAGCTTTAATTCAAATGGGTTCGAGCGGTTCGATTCAAGTTCTCACTTGGCTGGTGAAAATCATCAGAACCCCTTTGGTGGATGACATCAATGGAGAAATCCCAAGAATTATCAGCCTCCTGGGGGCGGATGACATGGCGATTCGAGCGGCGGCGATGAACTGCGTTCTTGAAATTGCGTTTCTGGGGAGGGAGGAAGTGATCGAATTGATGCTTGGGGAGGACTTGATCGAGAAGCTCATGAATTTACAGAGGTTGGAGACAAAAATGGAGGAAGGAGAGGGGAAGTTTCCTTTTTCGAGGTGCGTAGCGGGGTTCGCAGTGCAGGTGGAGGTTGGGCAGGGGTTGGAGGAGCAGAGTGAGAGAAGAGGGTTTAAGATGGAAATATTGAGGAGAGTGAGGGAGGCCTCTGTTTCTGATGCAGAGGCTGCCTCTGTTGTTGCAGAGGTTTTGTGGGGTTCATCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

370

Amino Acids

41.17

Weight (kDa)

4.91

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017248)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28800
malus_domestica MD15G1128100.v1.1
prunus_persica Prupe.1G483400_v2.0.a1
pyrus_communis pycom15g11530
rosa_chinensis RchiOBHm_Chr6g0297551
rosa_laevigata RLG00000011584
rosa_multiflora Rmu_ssc0000319.1_g000004
rosa_roxburghii Rroxscaffold_7G00170370
rosa_rugosa Rorug06G0273500
rosa_samantha Rh6AG384500 Rh6BG392600 Rh6DG385000
rosa_wichuraiana Rw6G033490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 955
Acc36I ACCTGC 1 cut(s) 955
AccBSI CCGCTC 2 cut(s) 666, 788
AciI CCGC 9 cut(s) 44, 129, 286, 335, 666, 767, 788, 791, 950
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 515, 883
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 5 cut(s) 318, 638, 718, 763, 766
AjnI CCWGG 2 cut(s) 453, 759
AjuI GAANNNNNNNTTGG 4 cut(s) 468, 500, 837, 869
AluBI AGCT 7 cut(s) 68, 151, 211, 244, 253, 644, 877
AluI AGCT 7 cut(s) 68, 151, 211, 244, 253, 644, 877
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 3 cut(s) 197, 549, 893
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 5 cut(s) 3, 9, 162, 265, 1044
ApeKI GCWGC 4 cut(s) 211, 253, 563, 1067
ApoI RAATTY 2 cut(s) 515, 883
Asp700I GAANNNNTTC 1 cut(s) 483
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 273, 629
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 5 cut(s) 190, 286, 442, 706, 1095
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 273, 629
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 4 cut(s) 198, 240, 550, 1054
BccI CCATC 3 cut(s) 179, 382, 1012
BceAI ACGGC 2 cut(s) 280, 311
BciT130I CCWGG 2 cut(s) 455, 761
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 3 cut(s) 197, 549, 893
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 2 cut(s) 80, 254
BfuAI ACCTGC 1 cut(s) 955
BglI GCCNNNNNGGC 1 cut(s) 137
BisI GCNGC 7 cut(s) 129, 212, 254, 564, 789, 792, 1068
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 7 cut(s) 130, 213, 255, 565, 790, 793, 1069
Bme1390I CCNGG 3 cut(s) 455, 560, 761
Bme18I GGWCC 2 cut(s) 273, 629
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 273, 629
BmiI GGNNCC 3 cut(s) 157, 275, 630
BmrFI CCNGG 3 cut(s) 455, 560, 761
BmsI GCATC 2 cut(s) 840, 1048
BplI GAGNNNNNCTC 2 cut(s) 1055, 1087
BpmI CTGGAG 1 cut(s) 163
Bpu1102I GCTNAGC 1 cut(s) 215
BpuMI CCSGG 1 cut(s) 560
Bsa29I ATCGAT 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 549
BsaJI CCNNGG 6 cut(s) 6, 12, 159, 327, 454, 760
BsaWI WCCGGW 1 cut(s) 270
Bsc4I CCNNNNNNNGG 5 cut(s) 318, 638, 718, 763, 766
BseBI CCWGG 2 cut(s) 455, 761
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 6 cut(s) 6, 12, 159, 327, 454, 760
BseGI GGATG 3 cut(s) 40, 727, 775
BseLI CCNNNNNNNGG 5 cut(s) 318, 638, 718, 763, 766
BseMII CTCAG 2 cut(s) 229, 479
BseRI GAGGAG 5 cut(s) 32, 269, 407, 1004, 1045
BseXI GCAGC 4 cut(s) 198, 240, 550, 1054
BsgI GTGCAG 1 cut(s) 983
Bsh1285I CGRYCG 1 cut(s) 636
BshFI GGCC 5 cut(s) 5, 11, 164, 267, 1046
BshVI ATCGAT 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 2 cut(s) 271, 559
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 5 cut(s) 318, 638, 718, 763, 766
BsmAI GTCTC 3 cut(s) 197, 549, 893
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 5 cut(s) 5, 11, 164, 267, 1046
Bso31I GGTCTC 1 cut(s) 549
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 4 cut(s) 355, 633, 840, 867
Bsp1720I GCTNAGC 1 cut(s) 215
BspACI CCGC 9 cut(s) 44, 129, 286, 335, 666, 767, 788, 791, 950
BspANI GGCC 5 cut(s) 5, 11, 164, 267, 1046
BspCNI CTCAG 2 cut(s) 228, 480
BspDI ATCGAT 1 cut(s) 354
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 3 cut(s) 157, 275, 630
BspMAI CTGCAG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 549
BsrBI CCGCTC 2 cut(s) 666, 788
BssECI CCNNGG 6 cut(s) 6, 12, 159, 327, 454, 760
BssMI GATC 4 cut(s) 355, 633, 840, 867
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 455, 761
Bst6I CTCTTC 2 cut(s) 200, 1000
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 215, 488
BstDSI CCRYGG 2 cut(s) 12, 327
BstF5I GGATG 3 cut(s) 40, 727, 775
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 4 cut(s) 358, 636, 843, 870
BstMAI GTCTC 3 cut(s) 197, 549, 893
BstMBI GATC 4 cut(s) 355, 633, 840, 867
BstMCI CGRYCG 1 cut(s) 636
BstMWI GCNNNNNNNGC 8 cut(s) 137, 250, 332, 569, 578, 785, 956, 1067
BstNI CCWGG 2 cut(s) 455, 761
BstSCI CCNGG 3 cut(s) 453, 558, 759
BstSFI CTRYAG 2 cut(s) 80, 254
BstV1I GCAGC 4 cut(s) 198, 240, 550, 1054
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 5 cut(s) 5, 11, 164, 267, 1046
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 2 cut(s) 12, 327
BtgZI GCGATG 1 cut(s) 809
BtsCI GGATG 3 cut(s) 40, 727, 775
BtsI GCAGTG 1 cut(s) 966
BtsIMutI CAGTG 1 cut(s) 966
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 1 cut(s) 185
CaiI CAGNNNCTG 1 cut(s) 1067
CciI TCATGA 1 cut(s) 879
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 273, 629
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 775, 880
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 215, 488
DpnI GATC 4 cut(s) 357, 635, 842, 869
DpnII GATC 4 cut(s) 355, 633, 840, 867
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 200, 1000
EarI CTCTTC 2 cut(s) 200, 1000
EciI GGCGGA 1 cut(s) 782
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 1046
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 549
Eco47I GGWCC 2 cut(s) 273, 629
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 453, 759
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 778, 883
FaiI YATR 4 cut(s) 104, 106, 776, 881
FaqI GGGAC 1 cut(s) 259
FatI CATG 2 cut(s) 774, 879
FauI CCCGC 1 cut(s) 943
Fnu4HI GCNGC 7 cut(s) 129, 212, 254, 564, 789, 792, 1068
FokI GGATG 3 cut(s) 27, 734, 782
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 7 cut(s) 129, 212, 254, 564, 789, 792, 1068
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 348
GluI GCNGC 7 cut(s) 129, 212, 254, 564, 789, 792, 1068
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 5 cut(s) 5, 11, 164, 267, 1046
HapII CCGG 2 cut(s) 271, 559
HhaI GCGC 1 cut(s) 349
Hin1II CATG 2 cut(s) 778, 883
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 6 cut(s) 53, 398, 459, 530, 673, 781
HpaII CCGG 2 cut(s) 271, 559
HphI GGTGA 5 cut(s) 190, 286, 442, 706, 1095
Hpy188I TCNGA 8 cut(s) 60, 155, 360, 403, 489, 633, 707, 1057
Hpy188III TCNNGA 8 cut(s) 146, 236, 379, 512, 554, 809, 871, 880
HpyAV CCTTC 2 cut(s) 242, 908
HpyCH4IV ACGT 2 cut(s) 36, 366
HpyCH4V TGCA 4 cut(s) 256, 964, 1061, 1082
HpyF10VI GCNNNNNNNGC 8 cut(s) 137, 250, 332, 569, 578, 785, 956, 1067
HpyF3I CTNAG 2 cut(s) 215, 488
HpySE526I ACGT 2 cut(s) 36, 366
Hsp92II CATG 2 cut(s) 778, 883
HspAI GCGC 1 cut(s) 347
Kzo9I GATC 4 cut(s) 355, 633, 840, 867
LmnI GCTCC 4 cut(s) 19, 249, 641, 991
Lsp1109I GCAGC 4 cut(s) 198, 240, 550, 1054
LweI GCATC 2 cut(s) 840, 1048
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 36, 366
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 357, 635, 842, 869
MbiI CCGCTC 2 cut(s) 666, 788
MboI GATC 4 cut(s) 355, 633, 840, 867
MboII GAAGA 4 cut(s) 73, 187, 373, 1017
MhlI GDGCHC 1 cut(s) 153
MmeI TCCRAC 4 cut(s) 592, 619, 876, 966
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 4 cut(s) 420, 623, 647, 1014
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 2 cut(s) 271, 559
MspR9I CCNGG 3 cut(s) 455, 560, 761
MvaI CCWGG 2 cut(s) 455, 761
MwoI GCNNNNNNNGC 8 cut(s) 137, 250, 332, 569, 578, 785, 956, 1067
NciI CCSGG 1 cut(s) 560
NdeII GATC 4 cut(s) 355, 633, 840, 867
NlaIII CATG 2 cut(s) 778, 883
NlaIV GGNNCC 3 cut(s) 157, 275, 630
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 292
PaeR7I CTCGAG 1 cut(s) 146
PagI TCATGA 1 cut(s) 879
PaqCI CACCTGC 1 cut(s) 955
PceI AGGCCT 1 cut(s) 1046
PcsI WCGNNNNNNNCGW 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 6 cut(s) 53, 398, 459, 530, 673, 781
PkrI GCNGC 7 cut(s) 130, 213, 255, 565, 790, 793, 1069
Ple19I CGATCG 1 cut(s) 636
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 453, 759
PspGI CCWGG 2 cut(s) 453, 759
PspN4I GGNNCC 3 cut(s) 157, 275, 630
PspPI GGNCC 2 cut(s) 273, 629
PstI CTGCAG 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 1067
PvuI CGATCG 1 cut(s) 636
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 4 cut(s) 420, 623, 647, 1014
SatI GCNGC 7 cut(s) 129, 212, 254, 564, 789, 792, 1068
Sau3AI GATC 4 cut(s) 355, 633, 840, 867
Sau96I GGNCC 2 cut(s) 273, 629
ScrFI CCNGG 3 cut(s) 455, 560, 761
SduI GDGCHC 1 cut(s) 153
SfaNI GCATC 2 cut(s) 840, 1048
SfcI CTRYAG 2 cut(s) 80, 254
Sfr274I CTCGAG 1 cut(s) 146
SinI GGWCC 2 cut(s) 273, 629
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SseBI AGGCCT 1 cut(s) 1046
SsiI CCGC 9 cut(s) 44, 129, 286, 335, 666, 767, 788, 791, 950
SspI AATATT 1 cut(s) 1026
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 1046
StyD4I CCNGG 3 cut(s) 453, 558, 759
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 2 cut(s) 39, 369
TauI GCSGC 3 cut(s) 131, 791, 794
TfiI GAWTC 6 cut(s) 53, 398, 459, 530, 673, 781
Tru1I TTAA 4 cut(s) 420, 623, 647, 1014
Tru9I TTAA 4 cut(s) 420, 623, 647, 1014
TscAI CASTG 1 cut(s) 966
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 4 cut(s) 211, 253, 563, 1067
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 29, 812, 896, 1089
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 966
VpaK11BI GGWCC 2 cut(s) 273, 629
XapI RAATTY 2 cut(s) 515, 883
XhoI CTCGAG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.