FvH4_2g30950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015553
Physical Location & Seq
Reverse (-)
23849239 .. 23850896
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30950.t1

Sequence Viewer

Length: 672 bp
ATGGCAATGACCACATGGGTTCTTTTGGCTTCTCTTCTTGTTGTCTCTGTTTCTGCTGCTACTCAAATGAAAGTTACTAATAACCCTGCGGATGAGTTAGTGGCTGTGCTTAACGCTAATAGAACTGCACACAAATCACCTTCCCTCTATGACAACCCTGGATTGGCCTGCATTGCCTTGCAGTACATAAAAGCGTACGAAGGTGACTGCGGTGCTGTAGGAGGTCCAGATGCCAAGAAGCCAGCTGATTCTGAGTTTGTTGAAGCTTTTGCTCCAACCTGTGGTGTTCAAGTCTCAACCCTCTCCCCAATCACCGGTCGTTTACTTGGCTGCGAGACTAAATATGTCCCTGCTGCCGAAGCGTTTTCAAACATTTTGATTGAAAGCAATAAGAGCTTGGACATTCTCTACAATAAGAACCACACTGAAGTCGGAGCTGCTGTGAGTGGCAGTGATGGTGGTTCTCCATATTTCTGGTGTGTGTTGTTCAGCGGCGGCAAAACTAACAGCAGCTTTGTTCCCGAGGAAGGTGAGGTTAAGACAACAAGACCTGGGTGCTTTAGTGGTGCGAATGATGACTGCAATGGCGCTTATGATTGGTCTAGAAGGAGTCGTGTGTGGGCATTTTTCACCACAGCTCTGATTGCAATGGGGTTTGCCTTGGGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

23.55

Weight (kDa)

5.04

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015553)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30950
malus_domestica MD08G1071500.v1.1 MD13G1011100.v1.1 MD15G1049700.v1.1
prunus_persica Prupe.1G404000_v2.0.a1
pyrus_communis pycom08g05940 pycom15g04840
rosa_chinensis RchiOBHm_Chr6g0311891
rosa_laevigata RLG00000010371
rosa_multiflora Rmu_sc0002888.1_g000053
rosa_roxburghii Rroxscaffold_7G00157250
rosa_rugosa Rorug06G0391200
rosa_samantha Rh6BG518700 Rh6CG524400 Rh6DG510000
rosa_wichuraiana Rw6G044170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 670
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 4 cut(s) 89, 210, 492, 495
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 2 cut(s) 185, 197
AfiI CCNNNNNNNGG 4 cut(s) 163, 281, 314, 527
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 4 cut(s) 263, 290, 369, 383
AjnI CCWGG 2 cut(s) 157, 550
AluBI AGCT 6 cut(s) 245, 266, 396, 437, 513, 638
AluI AGCT 6 cut(s) 245, 266, 396, 437, 513, 638
Alw26I GTCTC 3 cut(s) 49, 298, 329
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 5 cut(s) 56, 330, 353, 437, 510
AsiGI ACCGGT 1 cut(s) 314
AspLEI GCGC 1 cut(s) 590
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 5 cut(s) 129, 215, 304, 542, 622
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 1 cut(s) 224
BbvI GCAGC 5 cut(s) 43, 317, 340, 424, 522
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 2 cut(s) 159, 552
BcoDI GTCTC 3 cut(s) 49, 298, 329
BfaI CTAG 1 cut(s) 603
BfmI CTRYAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 591
BisI GCNGC 7 cut(s) 57, 331, 354, 438, 493, 496, 511
BlsI GCNGC 7 cut(s) 58, 332, 355, 439, 494, 497, 512
Bme1390I CCNGG 2 cut(s) 159, 552
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 159, 552
BmsI GCATC 1 cut(s) 220
BsaJI CCNNGG 4 cut(s) 157, 522, 551, 660
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 281, 314, 527
Bse118I RCCGGY 1 cut(s) 314
Bse3DI GCAATG 4 cut(s) 12, 171, 589, 654
BseBI CCWGG 2 cut(s) 159, 552
BseDI CCNNGG 4 cut(s) 157, 522, 551, 660
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 4 cut(s) 163, 281, 314, 527
BseMI GCAATG 4 cut(s) 12, 171, 589, 654
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 5 cut(s) 43, 317, 340, 424, 522
BsgI GTGCAG 1 cut(s) 111
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 319
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 315
BsiWI CGTACG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 4 cut(s) 163, 281, 314, 527
BsmAI GTCTC 3 cut(s) 49, 298, 329
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 521
BspACI CCGC 4 cut(s) 89, 210, 492, 495
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 244
BsrDI GCAATG 4 cut(s) 12, 171, 589, 654
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 4 cut(s) 157, 522, 551, 660
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 2 cut(s) 159, 552
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 169, 243
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 1 cut(s) 590
BstMAI GTCTC 3 cut(s) 49, 298, 329
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 4 cut(s) 173, 359, 393, 644
BstNI CCWGG 2 cut(s) 159, 552
BstSCI CCNGG 2 cut(s) 157, 550
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 5 cut(s) 43, 317, 340, 424, 522
BstXI CCANNNNNNTGG 1 cut(s) 474
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 423, 457
Cac8I GCNNGC 2 cut(s) 169, 243
CfoI GCGC 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 184, 196
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 1 cut(s) 15
CviQI GTAC 2 cut(s) 184, 196
DdeI CTNAG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 157, 550
EcoT14I CCWWGG 1 cut(s) 660
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 1 cut(s) 18
FaiI YATR 7 cut(s) 16, 150, 188, 345, 469, 594, 670
FaqI GGGAC 1 cut(s) 332
FatI CATG 1 cut(s) 14
Fnu4HI GCNGC 7 cut(s) 57, 331, 354, 438, 493, 496, 511
FokI GGATG 1 cut(s) 104
Fsp4HI GCNGC 7 cut(s) 57, 331, 354, 438, 493, 496, 511
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 589
GluI GCNGC 7 cut(s) 57, 331, 354, 438, 493, 496, 511
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 315
HhaI GCGC 1 cut(s) 590
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 2 cut(s) 248, 610
HpaII CCGG 1 cut(s) 315
HphI GGTGA 5 cut(s) 129, 215, 304, 542, 622
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 3 cut(s) 253, 434, 642
Hpy188III TCNNGA 3 cut(s) 227, 521, 603
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 4 cut(s) 150, 194, 521, 600
HpyCH4V TGCA 5 cut(s) 128, 171, 181, 582, 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 359, 393, 644
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 1 cut(s) 588
LmnI GCTCC 2 cut(s) 277, 434
Lsp1109I GCAGC 5 cut(s) 43, 317, 340, 424, 522
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 73, 203
MboII GAAGA 1 cut(s) 26
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 2 cut(s) 299, 412
MnlI CCTC 5 cut(s) 155, 215, 311, 517, 526
MseI TTAA 2 cut(s) 111, 537
MspA1I CMGCKG 2 cut(s) 245, 492
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 159, 552
MvaI CCWGG 2 cut(s) 159, 552
MwoI GCNNNNNNNGC 4 cut(s) 173, 359, 393, 644
NlaIII CATG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 248
Pfl23II CGTACG 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 281
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 7 cut(s) 58, 332, 355, 439, 494, 497, 512
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
PsiI TTATAA 1 cut(s) 670
Psp6I CCWGG 2 cut(s) 157, 550
PspGI CCWGG 2 cut(s) 157, 550
PspLI CGTACG 1 cut(s) 195
PspPI GGNCC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 2 cut(s) 185, 197
RsaNI GTAC 2 cut(s) 184, 196
SaqAI TTAA 2 cut(s) 111, 537
SatI GCNGC 7 cut(s) 57, 331, 354, 438, 493, 496, 511
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 2 cut(s) 159, 552
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 224
SsiI CCGC 4 cut(s) 89, 210, 492, 495
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 157, 550
StyI CCWWGG 1 cut(s) 660
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 495, 498
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 111, 537
Tru9I TTAA 2 cut(s) 111, 537
TscAI CASTG 2 cut(s) 430, 457
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 5 cut(s) 56, 330, 353, 437, 510
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 2 cut(s) 430, 457
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 224
XbaI TCTAGA 1 cut(s) 602
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.