Prupe.1G404000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015553
Physical Location & Seq
Reverse (-)
35569749 .. 35571618
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G404000.1

Sequence Viewer

Length: 672 bp
ATGGCAAAGAGCACATGGTTTCTTCTAGTTTCTCTTCTTGTTGTCTCTGCTGCAGCTGCTACTCAGATCAAAGTTACTGATAACCCTGCGGATGAGTTAGTGAGTGTGATTAACAGCAACAGAACTGCACACAAGGCATCAACCCTCTATGACAACCCTGGCTTGGCCTGCATTGCCCTGCAGTACATAAAAGCATACCAAAGTGACTGTAGTGCAGTAGGAGGAACTGACGCCAAGAAGCCCCTTGAATCTGAATTTGCTGAAACTTTTGCCCCCAACTGCGGTGTTCTAGCCTCAACCCTCACTCCAATTACCGGTCGTTTACTTGGCTGCCAGTCCAAATATGTGCCTCCTTCTGAAGCATTTTCAAAAATCTTGATTGAAAACAGCAAGAGCTTAGAAATTCTCTACAACAAGAACCACACTGAAGTGGGAGCTGCTGTGAGTGGCAGTGATGGAGGGTCTCCATATTTCTGGTGTGTGTTGTTCAGCAGTGGCAAGACTAACAGCAGCTTTGCAACAGAGGGAGGTGCGCCTAAAATAACAAGACCCGGATGCTTTAGTGGTGCTGATGACGAGTGCAGTGGTGCCGATGATCGATCTAGAAGCAGTCATATGTGGTCATTTTTCACCGCAGCTCTGATTGCAATGTGGTATGCCTTTGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

23.64

Weight (kDa)

5.61

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015553)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30950
malus_domestica MD08G1071500.v1.1 MD13G1011100.v1.1 MD15G1049700.v1.1
prunus_persica Prupe.1G404000_v2.0.a1
pyrus_communis pycom08g05940 pycom15g04840
rosa_chinensis RchiOBHm_Chr6g0311891
rosa_laevigata RLG00000010371
rosa_multiflora Rmu_sc0002888.1_g000053
rosa_roxburghii Rroxscaffold_7G00157250
rosa_rugosa Rorug06G0391200
rosa_samantha Rh6BG518700 Rh6CG524400 Rh6DG510000
rosa_wichuraiana Rw6G044170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 587
AciI CCGC 3 cut(s) 89, 282, 633
AcsI RAATTY 2 cut(s) 254, 402
AcuI CTGAAG 2 cut(s) 378, 447
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 163, 281, 314
AgeI ACCGGT 1 cut(s) 314
AgsI TTSAA 3 cut(s) 248, 369, 383
AjnI CCWGG 1 cut(s) 157
AleI CACNNNNGTG 1 cut(s) 428
AluBI AGCT 5 cut(s) 56, 396, 437, 513, 638
AluI AGCT 5 cut(s) 56, 396, 437, 513, 638
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 49, 468
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 7 cut(s) 50, 53, 56, 330, 437, 510, 635
ApoI RAATTY 2 cut(s) 254, 402
AsiGI ACCGGT 1 cut(s) 314
AspLEI GCGC 1 cut(s) 535
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 622
BanI GGYRCC 1 cut(s) 587
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 7 cut(s) 37, 43, 65, 317, 424, 522, 647
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 159
BcnI CCSGG 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 49, 468
BfaI CTAG 3 cut(s) 26, 290, 603
BfmI CTRYAG 3 cut(s) 51, 179, 208
BisI GCNGC 7 cut(s) 51, 54, 57, 331, 438, 511, 636
BlsI GCNGC 7 cut(s) 52, 55, 58, 332, 439, 512, 637
Bme1390I CCNGG 2 cut(s) 159, 552
BmiI GGNNCC 1 cut(s) 589
BmrFI CCNGG 2 cut(s) 159, 552
BmsI GCATC 2 cut(s) 146, 545
BpuMI CCSGG 1 cut(s) 552
Bsa29I ATCGAT 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 4 cut(s) 289, 319, 426, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 281, 314
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 2 cut(s) 171, 654
BseBI CCWGG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 598
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 97, 560
BseLI CCNNNNNNNGG 3 cut(s) 163, 281, 314
BseMI GCAATG 2 cut(s) 171, 654
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 7 cut(s) 37, 43, 65, 317, 424, 522, 647
BsgI GTGCAG 3 cut(s) 111, 234, 601
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 587
BshTI ACCGGT 1 cut(s) 314
BshVI ATCGAT 1 cut(s) 598
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 2 cut(s) 315, 552
BslI CCNNNNNNNGG 3 cut(s) 163, 281, 314
BsmAI GTCTC 2 cut(s) 49, 468
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 66, 595, 599
BspACI CCGC 3 cut(s) 89, 282, 633
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 76
BspDI ATCGAT 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 589
BspMAI CTGCAG 2 cut(s) 55, 183
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 468
BsrDI GCAATG 2 cut(s) 171, 654
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 3 cut(s) 66, 595, 599
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 63, 397
BstF5I GGATG 2 cut(s) 97, 560
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 3 cut(s) 69, 598, 602
BstMAI GTCTC 2 cut(s) 49, 468
BstMBI GATC 3 cut(s) 66, 595, 599
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 5 cut(s) 56, 134, 168, 173, 644
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 157, 550
BstSFI CTRYAG 3 cut(s) 51, 179, 208
BstV1I GCAGC 7 cut(s) 37, 43, 65, 317, 424, 522, 647
BstXI CCANNNNNNTGG 1 cut(s) 474
Bsu15I ATCGAT 1 cut(s) 598
BsuRI GGCC 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 598
BtsCI GGATG 2 cut(s) 97, 560
BtsI GCAGTG 3 cut(s) 457, 499, 589
BtsIMutI CAGTG 4 cut(s) 423, 457, 499, 589
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 535
Cfr10I RCCGGY 1 cut(s) 314
ClaI ATCGAT 1 cut(s) 598
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 184
CspAI ACCGGT 1 cut(s) 314
CviAII CATG 1 cut(s) 15
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 63, 397
DpnI GATC 3 cut(s) 68, 597, 601
DpnII GATC 3 cut(s) 66, 595, 599
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 378, 447
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 18
FaiI YATR 9 cut(s) 16, 150, 188, 196, 345, 469, 615, 617, 657
FatI CATG 1 cut(s) 14
FauNDI CATATG 1 cut(s) 615
Fnu4HI GCNGC 7 cut(s) 51, 54, 57, 331, 438, 511, 636
FokI GGATG 2 cut(s) 104, 567
Fsp4HI GCNGC 7 cut(s) 51, 54, 57, 331, 438, 511, 636
FspBI CTAG 3 cut(s) 26, 290, 603
GlaI GCGC 1 cut(s) 534
GluI GCNGC 7 cut(s) 51, 54, 57, 331, 438, 511, 636
HaeIII GGCC 1 cut(s) 167
HapII CCGG 2 cut(s) 315, 552
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 535
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 18
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HinfI GANTC 1 cut(s) 248
HpaII CCGG 2 cut(s) 315, 552
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 4 cut(s) 66, 253, 358, 642
Hpy188III TCNNGA 2 cut(s) 376, 603
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 363
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 8 cut(s) 53, 128, 171, 181, 215, 518, 582, 647
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 134, 168, 173, 644
HpyF3I CTNAG 2 cut(s) 63, 397
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 18
HspAI GCGC 1 cut(s) 533
Kzo9I GATC 3 cut(s) 66, 595, 599
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 9 cut(s) 99, 144, 171, 181, 191, 328, 347, 460, 565
Lsp1109I GCAGC 7 cut(s) 37, 43, 65, 317, 424, 522, 647
LweI GCATC 2 cut(s) 146, 545
MaeI CTAG 3 cut(s) 26, 290, 603
MaeIII GTNAC 2 cut(s) 73, 203
MalI GATC 3 cut(s) 68, 597, 601
MboI GATC 3 cut(s) 66, 595, 599
MboII GAAGA 2 cut(s) 14, 26
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 3 cut(s) 254, 309, 402
MnlI CCTC 8 cut(s) 155, 215, 304, 311, 360, 452, 517, 521
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 2 cut(s) 315, 552
MspR9I CCNGG 2 cut(s) 159, 552
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 5 cut(s) 56, 134, 168, 173, 644
NciI CCSGG 1 cut(s) 552
NdeI CATATG 1 cut(s) 615
NdeII GATC 3 cut(s) 66, 595, 599
NlaIII CATG 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 203
OliI CACNNNNGTG 1 cut(s) 428
PfeI GAWTC 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 314
PkrI GCNGC 7 cut(s) 52, 55, 58, 332, 439, 512, 637
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 589
PstI CTGCAG 2 cut(s) 55, 183
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 7 cut(s) 51, 54, 57, 331, 438, 511, 636
Sau3AI GATC 3 cut(s) 66, 595, 599
ScrFI CCNGG 2 cut(s) 159, 552
SduI GDGCHC 1 cut(s) 14
SetI ASST 6 cut(s) 58, 398, 439, 515, 532, 640
SfaNI GCATC 2 cut(s) 146, 545
SfcI CTRYAG 3 cut(s) 51, 179, 208
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 3 cut(s) 254, 309, 402
SsiI CCGC 3 cut(s) 89, 282, 633
SspMI CTAG 3 cut(s) 26, 290, 603
StyD4I CCNGG 2 cut(s) 157, 550
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 598
TasI AATT 3 cut(s) 254, 309, 402
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 4 cut(s) 430, 457, 499, 589
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 7 cut(s) 50, 53, 56, 330, 437, 510, 635
Tsp45I GTSAC 1 cut(s) 203
TspRI CASTG 4 cut(s) 430, 457, 499, 589
XapI RAATTY 2 cut(s) 254, 402
XbaI TCTAGA 1 cut(s) 602
XspI CTAG 3 cut(s) 26, 290, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.