pycom08g05940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015553
Physical Location & Seq
Forward (+)
4500935 .. 4502675
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g05940.2

Sequence Viewer

Length: 702 bp
ATGGCGGCAAACAGCACATGGTTTCTCTTTCTTGTAGCTTCTGTACTCATCGTTTCAGCATCGGCTGGCACCCAAATCAAAGTTACTAATAACCCAGCGGATAAGCTAGTCGATATAATCAACAGCAACAGAACTGCACACAAAGCATCATCCCTCTACGACAACCAGGGTTTGGCGTGCATTGCCCTGCAGTACATAAAAGCATACCAAGATGACTGCGATGCTGTAGGAGGGTCCGATGCCAAGAAGCCTCCTGATTCTGCATTTGCTGAAACATTTGCTCCCAACTGTGGTGTTCAAACTTCAACCCTCGCTCCAATCACTGGTCGTTTAATTGGCTGCCAGTCCAAATATGTCCACGCTGATGAAGCATTTTCGAAAATCTTGATTGAAAACAGCAAGGCCTTGGACATTCTCTACAATAAGAACCACACTGAAGTGGGAGCTGCTGCGAGTGGCAGTGATGGTGGAGGTCCGTATTTCTGGTGTGTGTTGTTCAGCAGCGGAAAAACTAACAGCAGCTTTGTAACGGAGGGAGGTGAGGCTAAAATAACAAGGCCCGGATGCTTTAGTGGTGCTAATGACGATTGCAGTGAATCTAATCACCCAGCCAGTGGTGCCGATGATTGGTCTAGAAGCAGTCGTCTGTGGCCATTTTTCACCACGGCTCTGATTGCAATGTCGTATGCCTTTGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

24.63

Weight (kDa)

5.29

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015553)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30950
malus_domestica MD08G1071500.v1.1 MD13G1011100.v1.1 MD15G1049700.v1.1
prunus_persica Prupe.1G404000_v2.0.a1
pyrus_communis pycom08g05940 pycom15g04840
rosa_chinensis RchiOBHm_Chr6g0311891
rosa_laevigata RLG00000010371
rosa_multiflora Rmu_sc0002888.1_g000053
rosa_roxburghii Rroxscaffold_7G00157250
rosa_rugosa Rorug06G0391200
rosa_samantha Rh6BG518700 Rh6CG524400 Rh6DG510000
rosa_wichuraiana Rw6G044170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 68, 617
AccB7I CCANNNNNTGG 3 cut(s) 172, 323, 614
AciI CCGC 3 cut(s) 5, 98, 504
AcoI YGGCCR 1 cut(s) 650
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 2 cut(s) 45, 194
AfiI CCNNNNNNNGG 5 cut(s) 172, 290, 323, 614, 627
AgsI TTSAA 3 cut(s) 299, 306, 392
AjnI CCWGG 1 cut(s) 165
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 4 cut(s) 38, 106, 446, 522
AluI AGCT 4 cut(s) 38, 106, 446, 522
AoxI GGCC 3 cut(s) 402, 557, 650
ApeKI GCWGC 5 cut(s) 339, 446, 449, 501, 519
AspS9I GGNCC 3 cut(s) 234, 473, 558
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 3 cut(s) 551, 596, 652
AsuII TTCGAA 1 cut(s) 377
AvaII GGWCC 2 cut(s) 234, 473
BalI TGGCCA 1 cut(s) 652
BanI GGYRCC 2 cut(s) 68, 617
BbvI GCAGC 5 cut(s) 326, 433, 436, 513, 531
BccI CCATC 1 cut(s) 458
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 561
BfaI CTAG 2 cut(s) 107, 633
BfmI CTRYAG 2 cut(s) 188, 225
BisI GCNGC 6 cut(s) 6, 340, 447, 450, 502, 520
BlsI GCNGC 6 cut(s) 7, 341, 448, 451, 503, 521
Bme1390I CCNGG 2 cut(s) 167, 561
Bme18I GGWCC 2 cut(s) 234, 473
BmgT120I GGNCC 3 cut(s) 234, 473, 558
BmiI GGNNCC 3 cut(s) 70, 235, 619
BmrFI CCNGG 2 cut(s) 167, 561
BmsI GCATC 5 cut(s) 68, 155, 211, 229, 554
Bpu14I TTCGAA 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 166, 405, 663
BsaXI ACNNNNNCTCC 4 cut(s) 265, 295, 298, 328
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 290, 323, 614, 627
Bse1I ACTGG 3 cut(s) 328, 343, 612
Bse3DI GCAATG 2 cut(s) 180, 684
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 3 cut(s) 166, 405, 663
BseGI GGATG 2 cut(s) 149, 569
BseLI CCNNNNNNNGG 5 cut(s) 172, 290, 323, 614, 627
BseMI GCAATG 2 cut(s) 180, 684
BseNI ACTGG 3 cut(s) 328, 343, 612
BseXI GCAGC 5 cut(s) 326, 433, 436, 513, 531
BseYI CCCAGC 2 cut(s) 94, 607
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 3 cut(s) 404, 559, 652
BshNI GGYRCC 2 cut(s) 68, 617
BsiSI CCGG 1 cut(s) 561
BslI CCNNNNNNNGG 5 cut(s) 172, 290, 323, 614, 627
BsnI GGCC 3 cut(s) 404, 559, 652
Bsp119I TTCGAA 1 cut(s) 377
BspACI CCGC 3 cut(s) 5, 98, 504
BspANI GGCC 3 cut(s) 404, 559, 652
BspLI GGNNCC 3 cut(s) 70, 235, 619
BspMAI CTGCAG 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 2 cut(s) 68, 617
BsrDI GCAATG 2 cut(s) 180, 684
BsrI ACTGG 3 cut(s) 328, 343, 612
BssECI CCNNGG 3 cut(s) 166, 405, 663
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 290
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 67, 178
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 2 cut(s) 149, 569
BstMWI GCNNNNNNNGC 5 cut(s) 143, 182, 368, 617, 674
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 165, 559
BstSFI CTRYAG 2 cut(s) 188, 225
BstV1I GCAGC 5 cut(s) 326, 433, 436, 513, 531
BsuRI GGCC 3 cut(s) 404, 559, 652
BtgI CCRYGG 1 cut(s) 663
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 149, 569
BtsI GCAGTG 2 cut(s) 466, 598
BtsIMutI CAGTG 5 cut(s) 321, 432, 466, 598, 619
Cac8I GCNNGC 2 cut(s) 67, 178
Cfr13I GGNCC 3 cut(s) 234, 473, 558
Csp6I GTAC 2 cut(s) 44, 193
CviAII CATG 1 cut(s) 18
CviQI GTAC 2 cut(s) 44, 193
EaeI YGGCCR 1 cut(s) 650
Eco130I CCWWGG 1 cut(s) 405
Eco147I AGGCCT 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 234, 473
Eco57I CTGAAG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 1 cut(s) 21
FaiI YATR 6 cut(s) 19, 116, 197, 205, 354, 687
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 6 cut(s) 6, 340, 447, 450, 502, 520
FokI GGATG 2 cut(s) 136, 576
Fsp4HI GCNGC 6 cut(s) 6, 340, 447, 450, 502, 520
FspBI CTAG 2 cut(s) 107, 633
GluI GCNGC 6 cut(s) 6, 340, 447, 450, 502, 520
GsaI CCCAGC 2 cut(s) 98, 611
HaeIII GGCC 3 cut(s) 404, 559, 652
HapII CCGG 1 cut(s) 561
Hin1II CATG 1 cut(s) 21
HinfI GANTC 2 cut(s) 257, 596
HpaII CCGG 1 cut(s) 561
HphI GGTGA 3 cut(s) 551, 596, 652
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 238, 672
Hpy188III TCNNGA 3 cut(s) 254, 385, 633
Hpy8I GTNNAC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 6 cut(s) 137, 180, 190, 263, 591, 677
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 182, 368, 617, 674
Hsp92II CATG 1 cut(s) 21
LmnI GCTCC 3 cut(s) 286, 319, 443
Lsp1109I GCAGC 5 cut(s) 326, 433, 436, 513, 531
LweI GCATC 5 cut(s) 68, 155, 211, 229, 554
MaeI CTAG 2 cut(s) 107, 633
MaeIII GTNAC 2 cut(s) 82, 526
MlsI TGGCCA 1 cut(s) 652
MluCI AATT 1 cut(s) 333
MluNI TGGCCA 1 cut(s) 652
MnlI CCTC 8 cut(s) 164, 224, 261, 320, 464, 526, 530, 535
Mox20I TGGCCA 1 cut(s) 652
MscI TGGCCA 1 cut(s) 652
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 2 cut(s) 363, 437
Msp20I TGGCCA 1 cut(s) 652
MspA1I CMGCKG 2 cut(s) 98, 504
MspI CCGG 1 cut(s) 561
MspR9I CCNGG 2 cut(s) 167, 561
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 5 cut(s) 143, 182, 368, 617, 674
NciI CCSGG 1 cut(s) 561
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 70, 235, 619
NspV TTCGAA 1 cut(s) 377
OliI CACNNNNGTG 1 cut(s) 437
PceI AGGCCT 1 cut(s) 404
PfeI GAWTC 2 cut(s) 257, 596
PflMI CCANNNNNTGG 3 cut(s) 172, 323, 614
PkrI GCNGC 6 cut(s) 7, 341, 448, 451, 503, 521
Psp6I CCWGG 1 cut(s) 165
PspFI CCCAGC 2 cut(s) 94, 607
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 70, 235, 619
PspPI GGNCC 3 cut(s) 234, 473, 558
PstI CTGCAG 1 cut(s) 192
RsaI GTAC 2 cut(s) 45, 194
RsaNI GTAC 2 cut(s) 44, 193
RseI CAYNNNNRTG 2 cut(s) 363, 437
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 6 cut(s) 6, 340, 447, 450, 502, 520
Sau96I GGNCC 3 cut(s) 234, 473, 558
ScrFI CCNGG 2 cut(s) 167, 561
SetI ASST 6 cut(s) 40, 108, 448, 475, 524, 541
SfaNI GCATC 5 cut(s) 68, 155, 211, 229, 554
SfcI CTRYAG 2 cut(s) 188, 225
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 2 cut(s) 234, 473
SmiMI CAYNNNNRTG 2 cut(s) 363, 437
Sse9I AATT 1 cut(s) 333
SseBI AGGCCT 1 cut(s) 404
SsiI CCGC 3 cut(s) 5, 98, 504
SspMI CTAG 2 cut(s) 107, 633
StuI AGGCCT 1 cut(s) 404
StyD4I CCNGG 2 cut(s) 165, 559
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 2 cut(s) 111, 377
TasI AATT 1 cut(s) 333
TatI WGTACW 2 cut(s) 43, 192
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 257, 596
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 5 cut(s) 328, 439, 466, 598, 619
TseI GCWGC 5 cut(s) 339, 446, 449, 501, 519
TspDTI ATGAA 1 cut(s) 381
TspGWI ACGGA 2 cut(s) 465, 545
TspRI CASTG 5 cut(s) 328, 439, 466, 598, 619
Van91I CCANNNNNTGG 3 cut(s) 172, 323, 614
VpaK11BI GGWCC 2 cut(s) 234, 473
XbaI TCTAGA 1 cut(s) 632
XspI CTAG 2 cut(s) 107, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.