Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016652

Physical Location & Seq

Genomic Coordinates Forward (+)

24524615 .. 24527819

Gene Structure 3205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCACAAAAGTTATTCACGACTGCAAGCGAGACAGCCTTGTATTTTCAGTTCGGCATCAAGTTGAACAATGTTGTAGATACCCAGATTGCTTATGCGCTGATAGAAGAGCAAGAAGGTCGGAAGAGATTACCAGATGATTATATATCGTTCGTTGGCCTCCTCGCTGATCCACGTTATTGTGGAGTACCTTATCTCGAGAAGGAAGAAGTCCGGTTTCTTCTTAGGCAGGACCCCAACTTTTGGACGTACAGACCTTTATCTGAACAGATGGTTCGTGCGGCTGCAGATGATGTCCGCTTTCTTCCATACATCTATAACAGGATGATGGGGAAATTGAATCAACAGTCATTATGGTATCTTGCAGTTCGTGGTGCACTTTATTGTCGATGTTTTTGCATCACCAATAATGATTTTTCTGACTGGCCACCTCTCCCTACCATTCCAGATGACCTACTAGTGGATGGCAGTGCGCCTGAGGAAGAAATCCTTTCGGTTCTTGATGTTCCCCCAGGAAAAATGGGACGTGTAATTGGGAAAAGAGGGGCTTCCATTCTGTCAATAAAAGAATCTTGCGATGCCGAAATTCTCATGGGAGGTGATAAGGGCCCACCAGACAAGGTGTTCATCATAGGACCAGTGAAGCAGGTGAGGAAAGCAGAAGCCATGTTAAGGGGAAGGATGCTGGACATGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032991 GO:0034587 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043186 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045495 GO:0046483 GO:0046983 GO:0048519 GO:0050789 GO:0060255 GO:0060293 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:1990923

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 KH_1

Protein Analysis

233

Amino Acids

26.39

Weight (kDa)

5.24

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	14 - 113	1.3e-06	3'-5' exonuclease
KH_1	PF00013	167 - 225	1.3e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25910 AT2G25910
fragaria_vesca	FvH4_2g32310
malus_domestica	MD08G1074400.v1.1
prunus_persica	Prupe.1G416100_v2.0.a1 Prupe.1G416100_v2.0.a1
pyrus_communis	pycom08g06140
rosa_chinensis	RchiOBHm_Chr6g0310381
rosa_laevigata	RLG00000010487
rosa_roxburghii	Rroxscaffold_7G00158600
rosa_rugosa	Rorug06G0379600
rosa_samantha	Rh6BG503400 Rh6CG508400
rosa_wichuraiana	Rw6G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AccB7I	CCANNNNNTGG	1 cut(s)	243
AciI	CCGC	2 cut(s)	281, 298
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	585
AfaI	GTAC	3 cut(s)	189, 251, 695
AfiI	CCNNNNNNNGG	3 cut(s)	243, 460, 672
AflIII	ACRYGT	2 cut(s)	526, 690
AgsI	TTSAA	2 cut(s)	67, 340
AhlI	ACTAGT	1 cut(s)	457
AjiI	CACGTC	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	511
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	3 cut(s)	157, 425, 607
ApaI	GGGCCC	1 cut(s)	611
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	585
AspLEI	GCGC	2 cut(s)	100, 475
AspS9I	GGNCC	4 cut(s)	232, 607, 608, 635
AsuHPI	GGTGA	3 cut(s)	394, 611, 661
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	232, 635
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	2 cut(s)	379, 611
BalI	TGGCCA	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	3 cut(s)	265, 322, 458
BcgI	CGANNNNNNTGC	4 cut(s)	101, 135, 378, 412
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	457
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	282, 285
BlsI	GCNGC	2 cut(s)	283, 286
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	2 cut(s)	232, 635
BmeT110I	CYCGRG	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	527
BmgT120I	GGNCC	4 cut(s)	232, 607, 608, 635
BmiI	GGNNCC	2 cut(s)	234, 609
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	4 cut(s)	66, 408, 568, 672
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 460, 672
Bse1I	ACTGG	2 cut(s)	428, 638
Bse21I	CCTNAGG	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	3 cut(s)	330, 469, 687
BseLI	CCNNNNNNNGG	3 cut(s)	243, 460, 672
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	428, 638
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	2 cut(s)	379, 611
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	3 cut(s)	159, 427, 609
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	3 cut(s)	243, 460, 672
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	537
BsnI	GGCC	3 cut(s)	159, 427, 609
BsoBI	CYCGRG	1 cut(s)	197
Bsp120I	GGGCCC	1 cut(s)	607
Bsp1286I	GDGCHC	2 cut(s)	379, 611
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	2 cut(s)	281, 298
BspANI	GGCC	3 cut(s)	159, 427, 609
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	234, 609
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	428, 638
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	348
Bst6I	CTCTTC	2 cut(s)	102, 119
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	224, 477
BstF5I	GGATG	3 cut(s)	330, 469, 687
BstHHI	GCGC	2 cut(s)	100, 475
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	2 cut(s)	379, 611
BstV1I	GCAGC	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	159, 427, 609
BtgZI	GCGATG	1 cut(s)	591
BtrI	CACGTC	1 cut(s)	527
BtsCI	GGATG	3 cut(s)	330, 469, 687
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	2 cut(s)	475, 645
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	2 cut(s)	100, 475
Cfr13I	GGNCC	4 cut(s)	232, 607, 608, 635
Csp6I	GTAC	3 cut(s)	188, 250, 694
CviAII	CATG	3 cut(s)	592, 667, 691
CviJI	RGCY	7 cut(s)	38, 159, 284, 427, 548, 609, 665
CviKI_1	RGCY	7 cut(s)	38, 159, 284, 427, 548, 609, 665
CviQI	GTAC	3 cut(s)	188, 250, 694
DdeI	CTNAG	2 cut(s)	224, 477
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	2 cut(s)	102, 119
EarI	CTCTTC	2 cut(s)	102, 119
Eco24I	GRGCYC	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	232, 635
Eco81I	CCTNAGG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	2 cut(s)	232, 607
EcoRII	CCWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	611
FaeI	CATG	3 cut(s)	595, 670, 694
FalI	AAGNNNNNCTT	4 cut(s)	474, 506, 532, 564
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	3 cut(s)	591, 666, 690
Fnu4HI	GCNGC	2 cut(s)	282, 285
FokI	GGATG	3 cut(s)	337, 476, 694
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	2 cut(s)	282, 285
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	2 cut(s)	99, 474
GluI	GCNGC	2 cut(s)	282, 285
HaeIII	GGCC	3 cut(s)	159, 427, 609
HapII	CCGG	1 cut(s)	214
HhaI	GCGC	2 cut(s)	100, 475
Hin1II	CATG	3 cut(s)	595, 670, 694
Hin6I	GCGC	2 cut(s)	98, 473
HinP1I	GCGC	2 cut(s)	98, 473
HinfI	GANTC	2 cut(s)	340, 569
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	3 cut(s)	394, 611, 661
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	3 cut(s)	123, 265, 421
Hpy188III	TCNNGA	5 cut(s)	19, 197, 199, 446, 500
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	110, 196, 672
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4IV	ACGT	3 cut(s)	175, 248, 526
HpyCH4V	TGCA	5 cut(s)	26, 287, 365, 377, 399
HpyF3I	CTNAG	2 cut(s)	224, 477
HpySE526I	ACGT	3 cut(s)	175, 248, 526
Hsp92II	CATG	3 cut(s)	595, 670, 694
HspAI	GCGC	2 cut(s)	98, 473
Kzo9I	GATC	1 cut(s)	169
LguI	GCTCTTC	1 cut(s)	102
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	4 cut(s)	66, 408, 568, 672
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	3 cut(s)	175, 248, 526
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	6 cut(s)	119, 136, 212, 218, 296, 494
MhlI	GDGCHC	2 cut(s)	379, 611
MlsI	TGGCCA	1 cut(s)	427
MluCI	AATT	3 cut(s)	335, 531, 585
MluNI	TGGCCA	1 cut(s)	427
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	170, 173, 441, 472, 536, 590, 645
Mox20I	TGGCCA	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	427
MseI	TTAA	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	427
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	595, 670, 694
NlaIV	GGNNCC	2 cut(s)	234, 609
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	694
PaeR7I	CTCGAG	1 cut(s)	197
PaqCI	CACCTGC	1 cut(s)	637
PciI	ACATGT	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	340, 569
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	2 cut(s)	283, 286
PpuMI	RGGWCCY	1 cut(s)	232
PscI	ACATGT	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	234, 609
PspOMI	GGGCCC	1 cut(s)	607
PspPI	GGNCC	4 cut(s)	232, 607, 608, 635
PspPPI	RGGWCCY	1 cut(s)	232
PsrI	GAACNNNNNNTAC	2 cut(s)	35, 67
PstI	CTGCAG	1 cut(s)	289
RsaI	GTAC	3 cut(s)	189, 251, 695
RsaNI	GTAC	3 cut(s)	188, 250, 694
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	671
SatI	GCNGC	2 cut(s)	282, 285
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	4 cut(s)	232, 607, 608, 635
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	379, 611
SfaNI	GCATC	4 cut(s)	66, 408, 568, 672
SfcI	CTRYAG	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	2 cut(s)	232, 635
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SpeI	ACTAGT	1 cut(s)	457
Sse9I	AATT	3 cut(s)	335, 531, 585
SsiI	CCGC	2 cut(s)	281, 298
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	348
TaiI	ACGT	3 cut(s)	178, 251, 529
TaqI	TCGA	2 cut(s)	198, 388
TasI	AATT	3 cut(s)	335, 531, 585
TatI	WGTACW	1 cut(s)	693
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	340, 569
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TscAI	CASTG	2 cut(s)	475, 645
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	1 cut(s)	616
TspRI	CASTG	2 cut(s)	475, 645
Van91I	CCANNNNNTGG	1 cut(s)	243
VneI	GTGCAC	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	232, 635
XapI	RAATTY	1 cut(s)	585
XceI	RCATGY	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	197
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.