Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016652

Physical Location & Seq

Genomic Coordinates Reverse (-)

70245633 .. 70249029

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG503400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTTCTTCACCTTCTCCCTACCAGACACAGGTTCCTCTTTCGCCGGACCCAGGTGAAATACCCGTAATTCATGAAACCCAGTTCCCATGGGTGCCTGTTCAGATAGTGACTCATCCATCTCAGCTTCCTGCTGAGTTTCTGGAGCCTTCTGCTGACAGGCCATTGGTGATTGGGTTTGACTGCGAGGGAGTTGACCTGTGTCGAAATGGAACACTCTGTATCATGCAGCTTGCATTTCCAGAGGCTATATATCTGGTGGATGCCATTCAGGGAGGGGAGGTGCTTATACAAGCCTGTAAGCCTGCACTTGAGTCTAGCCACGTCACAAAAGTTATTCATGACTGCAAGCGAGACAGTGAGGCTTTGTATTTTCAGTTCGGCATCAAGTTGAACAATGTTGTAGATACCCAGATTGCTTATTCGTTGATAGAAGAGCAAGAAGGTCGGAAAAGATTACCAGATGATTATATATCATTCGTTGGCCTCCTTGCTGATCCACGTTATTGTGGAGTATCTTATCTCGAGAAGGAAGAAGTCCGTTTTCTTCTTAGGCAGGACCCCAACTTTTGGACGTATAGACCTTTATCTGAACAGATGGTTCGTGCAGCTGCAGATGATGTTCGCTTTCTTCCATATATCTATTGCAGGATGATGGGGAAATTGAATCAACAGTCATTATGGTATCTTGCTGTTCGTGGTGCACTTTATTGTCGATGTTTTTGCATCACCAATAATGACTTTTCTGACTGGCCACCTCTCCCTACCATTCCAGATAACCTACTAGTGGAGGGCAGTGCGCCCGAGGAAGAAATCCTTTCGGTTCTTGATGTTCCCCCAGGAAAAATGGGACGTGTAATTGGGAAAAGAGGGACTTCCATTCTGTCAATAAAAGAATCCTGCGATGCGGAAATCCTCATGGGAGGTGATAAGGGCCCACCAGACAAGGTGTTCATCATAGGACCAGTGAAGCAGGTGAGGAAAGCAGAAGCCATGTTAAGGGGAAGGATGCTGGACATGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032991 GO:0034587 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043186 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045495 GO:0046483 GO:0046983 GO:0048519 GO:0050789 GO:0060255 GO:0060293 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:1990923

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 KH_1

Protein Analysis

341

Amino Acids

38.29

Weight (kDa)

4.93

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	41 - 222	2e-22	3'-5' exonuclease
KH_1	PF00013	276 - 334	6.3e-10	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25910 AT2G25910
fragaria_vesca	FvH4_2g32310
malus_domestica	MD08G1074400.v1.1
prunus_persica	Prupe.1G416100_v2.0.a1 Prupe.1G416100_v2.0.a1
pyrus_communis	pycom08g06140
rosa_chinensis	RchiOBHm_Chr6g0310381
rosa_laevigata	RLG00000010487
rosa_roxburghii	Rroxscaffold_7G00158600
rosa_rugosa	Rorug06G0379600
rosa_samantha	Rh6BG503400 Rh6CG508400
rosa_wichuraiana	Rw6G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	964
Acc36I	ACCTGC	1 cut(s)	964
AccB1I	GGYRCC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	570
AciI	CCGC	1 cut(s)	908
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	752
AfaI	GTAC	1 cut(s)	1022
AfiI	CCNNNNNNNGG	5 cut(s)	31, 53, 570, 787, 999
AflIII	ACRYGT	2 cut(s)	853, 1017
AgsI	TTSAA	2 cut(s)	394, 667
AhlI	ACTAGT	1 cut(s)	784
AjiI	CACGTC	2 cut(s)	325, 854
AjnI	CCWGG	2 cut(s)	52, 838
AluBI	AGCT	3 cut(s)	127, 232, 611
AluI	AGCT	3 cut(s)	127, 232, 611
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	1 cut(s)	348
Alw44I	GTGCAC	1 cut(s)	702
AlwI	GGATC	1 cut(s)	491
Ama87I	CYCGRG	2 cut(s)	524, 803
AoxI	GGCC	4 cut(s)	161, 484, 752, 934
ApaI	GGGCCC	1 cut(s)	938
ApaLI	GTGCAC	1 cut(s)	702
ApeKI	GCWGC	3 cut(s)	229, 608, 611
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	5 cut(s)	49, 559, 934, 935, 962
AsuHPI	GGTGA	6 cut(s)	3, 68, 181, 721, 938, 988
AvaI	CYCGRG	2 cut(s)	524, 803
AvaII	GGWCC	3 cut(s)	49, 559, 962
BaeGI	GKGCMC	2 cut(s)	706, 938
BalI	TGGCCA	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	938
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	3 cut(s)	241, 598, 620
BccI	CCATC	3 cut(s)	127, 592, 649
BcgI	CGANNNNNNTGC	4 cut(s)	428, 462, 705, 739
BciT130I	CCWGG	2 cut(s)	54, 840
BcoDI	GTCTC	1 cut(s)	348
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	2 cut(s)	318, 785
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	964
BisI	GCNGC	3 cut(s)	230, 609, 612
BlsI	GCNGC	3 cut(s)	231, 610, 613
Bme1390I	CCNGG	2 cut(s)	54, 840
Bme18I	GGWCC	3 cut(s)	49, 559, 962
BmeT110I	CYCGRG	2 cut(s)	524, 803
BmgBI	CACGTC	2 cut(s)	325, 854
BmgT120I	GGNCC	5 cut(s)	49, 559, 934, 935, 962
BmiI	GGNNCC	6 cut(s)	36, 51, 96, 147, 561, 936
BmrFI	CCNGG	2 cut(s)	54, 840
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	5 cut(s)	253, 393, 735, 895, 999
BmuI	ACTGGG	1 cut(s)	76
BoxI	GACNNNNGTC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	52, 89, 804, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 53, 570, 787, 999
Bse1I	ACTGG	3 cut(s)	82, 755, 965
BseBI	CCWGG	2 cut(s)	54, 840
BseDI	CCNNGG	4 cut(s)	52, 89, 804, 838
BseGI	GGATG	4 cut(s)	115, 268, 657, 1014
BseLI	CCNNNNNNNGG	5 cut(s)	31, 53, 570, 787, 999
BseMII	CTCAG	2 cut(s)	126, 137
BseNI	ACTGG	3 cut(s)	82, 755, 965
BseSI	GKGCMC	2 cut(s)	706, 938
BseXI	GCAGC	3 cut(s)	241, 598, 620
BsgI	GTGCAG	2 cut(s)	291, 627
BshFI	GGCC	4 cut(s)	163, 486, 754, 936
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	706
BsiHKCI	CYCGRG	2 cut(s)	524, 803
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	864, 886
BslI	CCNNNNNNNGG	5 cut(s)	31, 53, 570, 787, 999
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	2 cut(s)	864, 886
BsnI	GGCC	4 cut(s)	163, 486, 754, 936
BsoBI	CYCGRG	2 cut(s)	524, 803
Bsp120I	GGGCCC	1 cut(s)	934
Bsp1286I	GDGCHC	2 cut(s)	706, 938
Bsp143I	GATC	1 cut(s)	496
Bsp19I	CCATGG	1 cut(s)	89
BspACI	CCGC	1 cut(s)	908
BspANI	GGCC	4 cut(s)	163, 486, 754, 936
BspCNI	CTCAG	2 cut(s)	127, 136
BspHI	TCATGA	2 cut(s)	73, 340
BspLI	GGNNCC	6 cut(s)	36, 51, 96, 147, 561, 936
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	1 cut(s)	491
BspQI	GCTCTTC	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	82, 755, 965
BssECI	CCNNGG	4 cut(s)	52, 89, 804, 838
BssMI	GATC	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	54, 840
Bst4CI	ACNGT	2 cut(s)	359, 675
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	234, 306, 350
BstDEI	CTNAG	3 cut(s)	123, 135, 551
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	4 cut(s)	115, 268, 657, 1014
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	496
BstNI	CCWGG	2 cut(s)	54, 840
BstNSI	RCATGY	1 cut(s)	1021
BstPAI	GACNNNNGTC	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	52, 838
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	2 cut(s)	706, 938
BstV1I	GCAGC	3 cut(s)	241, 598, 620
BsuRI	GGCC	4 cut(s)	163, 486, 754, 936
BtgI	CCRYGG	1 cut(s)	89
BtgZI	GCGATG	1 cut(s)	918
BtrI	CACGTC	2 cut(s)	325, 854
BtsCI	GGATG	4 cut(s)	115, 268, 657, 1014
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	3 cut(s)	364, 802, 972
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	3 cut(s)	234, 306, 350
CciI	TCATGA	2 cut(s)	73, 340
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	5 cut(s)	49, 559, 934, 935, 962
Csp6I	GTAC	1 cut(s)	1021
CviAII	CATG	7 cut(s)	74, 90, 226, 341, 919, 994, 1018
CviQI	GTAC	1 cut(s)	1021
DdeI	CTNAG	3 cut(s)	123, 135, 551
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	89
Eco24I	GRGCYC	1 cut(s)	938
Eco47I	GGWCC	3 cut(s)	49, 559, 962
Eco88I	CYCGRG	2 cut(s)	524, 803
EcoO109I	RGGNCCY	2 cut(s)	559, 934
EcoRII	CCWGG	2 cut(s)	52, 838
EcoT14I	CCWWGG	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	938
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	7 cut(s)	77, 93, 229, 344, 922, 997, 1021
FalI	AAGNNNNNCTT	4 cut(s)	801, 833, 859, 891
FaqI	GGGAC	2 cut(s)	864, 886
FatI	CATG	7 cut(s)	73, 89, 225, 340, 918, 993, 1017
Fnu4HI	GCNGC	3 cut(s)	230, 609, 612
FokI	GGATG	4 cut(s)	102, 275, 664, 1021
FriOI	GRGCYC	1 cut(s)	938
Fsp4HI	GCNGC	3 cut(s)	230, 609, 612
FspBI	CTAG	2 cut(s)	318, 785
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	3 cut(s)	230, 609, 612
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	4 cut(s)	163, 486, 754, 936
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	7 cut(s)	77, 93, 229, 344, 922, 997, 1021
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	112, 314, 667, 896
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	6 cut(s)	3, 68, 181, 721, 938, 988
Hpy166II	GTNNAC	2 cut(s)	196, 704
Hpy188I	TCNGA	4 cut(s)	105, 450, 592, 748
Hpy188III	TCNNGA	8 cut(s)	74, 143, 242, 341, 524, 526, 773, 827
Hpy8I	GTNNAC	2 cut(s)	196, 704
HpyAV	CCTTC	5 cut(s)	24, 159, 437, 523, 999
HpyCH4III	ACNGT	2 cut(s)	359, 675
HpyCH4IV	ACGT	4 cut(s)	324, 502, 575, 853
HpyCH4V	TGCA	9 cut(s)	229, 236, 308, 348, 608, 614, 648, 704, 726
HpyF3I	CTNAG	3 cut(s)	123, 135, 551
HpySE526I	ACGT	4 cut(s)	324, 502, 575, 853
Hsp92II	CATG	7 cut(s)	77, 93, 229, 344, 922, 997, 1021
HspAI	GCGC	1 cut(s)	800
Kzo9I	GATC	1 cut(s)	496
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	3 cut(s)	241, 598, 620
LweI	GCATC	5 cut(s)	253, 393, 735, 895, 999
MaeI	CTAG	2 cut(s)	318, 785
MaeII	ACGT	4 cut(s)	324, 502, 575, 853
MaeIII	GTNAC	2 cut(s)	109, 325
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	5 cut(s)	446, 539, 545, 623, 821
MhlI	GDGCHC	2 cut(s)	706, 938
MlsI	TGGCCA	1 cut(s)	754
MluCI	AATT	3 cut(s)	69, 662, 858
MluNI	TGGCCA	1 cut(s)	754
MlyI	GAGTC	2 cut(s)	106, 323
MmeI	TCCRAC	1 cut(s)	428
Mox20I	TGGCCA	1 cut(s)	754
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	1 cut(s)	998
Msp20I	TGGCCA	1 cut(s)	754
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	54, 840
MvaI	CCWGG	2 cut(s)	54, 840
NcoI	CCATGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	7 cut(s)	77, 93, 229, 344, 922, 997, 1021
NlaIV	GGNNCC	6 cut(s)	36, 51, 96, 147, 561, 936
NmuCI	GTSAC	2 cut(s)	109, 325
NspI	RCATGY	1 cut(s)	1021
PaeR7I	CTCGAG	1 cut(s)	524
PagI	TCATGA	2 cut(s)	73, 340
PaqCI	CACCTGC	1 cut(s)	964
PciI	ACATGT	1 cut(s)	1017
PciSI	GCTCTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	667, 896
PflMI	CCANNNNNTGG	1 cut(s)	570
PkrI	GCNGC	3 cut(s)	231, 610, 613
PleI	GAGTC	2 cut(s)	106, 322
PpsI	GAGTC	2 cut(s)	106, 322
PpuMI	RGGWCCY	1 cut(s)	559
PscI	ACATGT	1 cut(s)	1017
PshAI	GACNNNNGTC	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	52, 838
PspGI	CCWGG	2 cut(s)	52, 838
PspN4I	GGNNCC	6 cut(s)	36, 51, 96, 147, 561, 936
PspOMI	GGGCCC	1 cut(s)	934
PspPI	GGNCC	5 cut(s)	49, 559, 934, 935, 962
PspPPI	RGGWCCY	1 cut(s)	559
PsrI	GAACNNNNNNTAC	2 cut(s)	362, 394
PstI	CTGCAG	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	1 cut(s)	1022
RsaNI	GTAC	1 cut(s)	1021
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	998
SatI	GCNGC	3 cut(s)	230, 609, 612
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	5 cut(s)	49, 559, 934, 935, 962
SchI	GAGTC	2 cut(s)	106, 323
ScrFI	CCNGG	2 cut(s)	54, 840
SduI	GDGCHC	2 cut(s)	706, 938
SfaNI	GCATC	5 cut(s)	253, 393, 735, 895, 999
SfcI	CTRYAG	1 cut(s)	612
Sfr274I	CTCGAG	1 cut(s)	524
SinI	GGWCC	3 cut(s)	49, 559, 962
SlaI	CTCGAG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	311, 524
SmoI	CTYRAG	2 cut(s)	311, 524
SpeI	ACTAGT	1 cut(s)	784
Sse9I	AATT	3 cut(s)	69, 662, 858
SsiI	CCGC	1 cut(s)	908
SspMI	CTAG	2 cut(s)	318, 785
StyD4I	CCNGG	2 cut(s)	52, 838
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	359, 675
TaiI	ACGT	4 cut(s)	327, 505, 578, 856
TaqI	TCGA	3 cut(s)	205, 525, 715
TasI	AATT	3 cut(s)	69, 662, 858
TatI	WGTACW	1 cut(s)	1020
TfiI	GAWTC	2 cut(s)	667, 896
Tru1I	TTAA	1 cut(s)	998
Tru9I	TTAA	1 cut(s)	998
TscAI	CASTG	3 cut(s)	364, 802, 972
TseFI	GTSAC	2 cut(s)	109, 325
TseI	GCWGC	3 cut(s)	229, 608, 611
Tsp45I	GTSAC	2 cut(s)	109, 325
TspDTI	ATGAA	4 cut(s)	62, 90, 329, 943
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	3 cut(s)	364, 802, 972
Van91I	CCANNNNNTGG	1 cut(s)	570
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	3 cut(s)	49, 559, 962
XceI	RCATGY	1 cut(s)	1021
XhoI	CTCGAG	1 cut(s)	524
XspI	CTAG	2 cut(s)	318, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.