RLG00000010487

Exonuclease 3'-5' domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
2032779 .. 2036007
3229 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010487

Sequence Viewer

Length: 1128 bp
ATGAAGTGCAAGGGGTCCGTCGTCGCTGAAATTCAGCGGAGCTGTCGACCCGGAAACGAAACCGGGTTTCCGGGGGGCGGGGGGCGTGGATGGTCCGATCACATGGCTTCTTCACCTTCTCCCTACCAGACACACGTTCCTCTTTCGCCGGACCCAGGTGAAATACCCGTAATTCATGAAACCCAGTTCCCATGGGTGCCTGTTCAGATAGTGACTCATGCATCTCAGCTTCCTGCTGAGTTTCTGGAGCCTTCTGCTGACAGGCCATTGGTGATTGGGTTTGACTGCGAGGGAGTTGACCTCTGTCGAAATGGAACGCTCTGTATCATGCAGCTTGCATTTCCAGAGGCTATATATCTGGTAGATGCCATTCAGGGAGGGGAGATGCTTATACAAGCCTGTAAGCCTGCACTTGAGTCTAGCCACGTCACAAAAGTTATTCATGACTGCAAGCGAGACAGTGAGGCATTGTATTTTCAGTTTGGCATCAAGTTGAACAATGTTGTAGATACCCAGATTGCTTATTCGTTGATAGAAGAGCAAGAAGGTCGGAAAAGATTACCAGATGATTATATATCATTCGTTGGCCTCCTTGCTGATCCACGTTATTGTGGAGTATCTTATCTCGAGAAGGAAGAAGTCCGTTTTCTTCTTAGGCAGGACCCCAACTTTTGGACGTATAGACCTTTATCTGAACAGATGGTTCGTGCAGCTGCAGATGATGTTCGCTTTCTTCCATATATCTATTGCAGGATGATGGGGAAATTGAATCAACAGTCATTATGGTATCTTGCTGTTCGCGGTGCACTTTATTGTCGATGTTTTTGCATCACCAATAATGACTTTTCTGACTGGCCACCTCTCCCTACCATTCCAGATAACCTACTAGTGGAGGGCAGTGCGCTCGAGGAAGAAATCCTTTCGGTTCTTGATGTTCCCCCAGGAAAAATGGGACGTGTAATTGGGAAAAGAGGGACTTCCATTCTGTCAATAAAAGAATCCTGCGATGCGGAAATCCTCATGGGAGGTGATAAGGGCCCACCAGACAAGGTGTTCATCATAGGACCAGTGAAGCAGGTGAGGAAAGCAGAAGCCATGTTAAGGGGAAGGATGCTGGACATGTACTAA

Protein Analysis

376

Amino Acids

41.87

Weight (kDa)

5.24

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_A_exo1 PF01612 75 - 256 2.2e-22 3'-5' exonuclease
KH_1 PF00013 310 - 368 7.3e-10 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25910 AT2G25910
fragaria_vesca FvH4_2g32310
malus_domestica MD08G1074400.v1.1
prunus_persica Prupe.1G416100_v2.0.a1 Prupe.1G416100_v2.0.a1
pyrus_communis pycom08g06140
rosa_chinensis RchiOBHm_Chr6g0310381
rosa_laevigata RLG00000010487
rosa_roxburghii Rroxscaffold_7G00158600
rosa_rugosa Rorug06G0379600
rosa_samantha Rh6BG503400 Rh6CG508400
rosa_wichuraiana Rw6G042960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1066
Acc36I ACCTGC 1 cut(s) 1066
AccB1I GGYRCC 1 cut(s) 196
AccB7I CCANNNNNTGG 1 cut(s) 672
AccI GTMKAC 1 cut(s) 46
AccII CGCG 1 cut(s) 801
AciI CCGC 4 cut(s) 37, 78, 801, 1010
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 854
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 1 cut(s) 1124
AfiI CCNNNNNNNGG 5 cut(s) 77, 155, 672, 889, 1101
AflIII ACRYGT 3 cut(s) 133, 955, 1119
AgsI TTSAA 2 cut(s) 496, 769
AhlI ACTAGT 1 cut(s) 886
AjiI CACGTC 2 cut(s) 427, 956
AjnI CCWGG 2 cut(s) 154, 940
AluBI AGCT 4 cut(s) 42, 229, 334, 713
AluI AGCT 4 cut(s) 42, 229, 334, 713
Alw21I GWGCWC 1 cut(s) 808
Alw26I GTCTC 1 cut(s) 450
Alw44I GTGCAC 1 cut(s) 804
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 2 cut(s) 626, 905
AoxI GGCC 4 cut(s) 263, 586, 854, 1036
ApaI GGGCCC 1 cut(s) 1040
ApaLI GTGCAC 1 cut(s) 804
ApeKI GCWGC 3 cut(s) 331, 710, 713
ApoI RAATTY 1 cut(s) 30
AspLEI GCGC 1 cut(s) 904
AspS9I GGNCC 7 cut(s) 15, 93, 151, 661, 1036, 1037, 1064
AsuC2I CCSGG 3 cut(s) 51, 64, 72
AsuHPI GGTGA 6 cut(s) 105, 170, 283, 823, 1040, 1090
AvaI CYCGRG 2 cut(s) 626, 905
AvaII GGWCC 5 cut(s) 15, 93, 151, 661, 1064
BaeGI GKGCMC 2 cut(s) 808, 1040
BalI TGGCCA 1 cut(s) 856
BanI GGYRCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 1040
Bbv12I GWGCWC 1 cut(s) 808
BbvI GCAGC 3 cut(s) 343, 700, 722
BccI CCATC 3 cut(s) 84, 694, 751
BcgI CGANNNNNNTGC 6 cut(s) 530, 564, 807, 841, 886, 920
BciT130I CCWGG 2 cut(s) 156, 942
BcnI CCSGG 3 cut(s) 51, 64, 72
BcoDI GTCTC 1 cut(s) 450
BcuI ACTAGT 1 cut(s) 886
BfaI CTAG 2 cut(s) 420, 887
BfmI CTRYAG 1 cut(s) 714
BfuAI ACCTGC 1 cut(s) 1066
BisI GCNGC 3 cut(s) 332, 711, 714
BlsI GCNGC 3 cut(s) 333, 712, 715
Bme1390I CCNGG 5 cut(s) 51, 64, 72, 156, 942
Bme18I GGWCC 5 cut(s) 15, 93, 151, 661, 1064
BmeT110I CYCGRG 2 cut(s) 626, 905
BmgBI CACGTC 2 cut(s) 427, 956
BmgT120I GGNCC 7 cut(s) 15, 93, 151, 661, 1036, 1037, 1064
BmiI GGNNCC 6 cut(s) 16, 153, 198, 249, 663, 1038
BmrFI CCNGG 5 cut(s) 51, 64, 72, 156, 942
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 7 cut(s) 230, 355, 375, 495, 837, 997, 1101
BmuI ACTGGG 1 cut(s) 178
BoxI GACNNNNGTC 1 cut(s) 303
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 3 cut(s) 51, 64, 72
BsaJI CCNNGG 4 cut(s) 71, 154, 191, 940
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 155, 672, 889, 1101
Bse1I ACTGG 3 cut(s) 184, 857, 1067
BseBI CCWGG 2 cut(s) 156, 942
BseDI CCNNGG 4 cut(s) 71, 154, 191, 940
BseGI GGATG 3 cut(s) 95, 759, 1116
BseLI CCNNNNNNNGG 5 cut(s) 77, 155, 672, 889, 1101
BseMII CTCAG 2 cut(s) 228, 239
BseNI ACTGG 3 cut(s) 184, 857, 1067
BseSI GKGCMC 2 cut(s) 808, 1040
BseXI GCAGC 3 cut(s) 343, 700, 722
BsgI GTGCAG 2 cut(s) 393, 729
Bsh1236I CGCG 1 cut(s) 801
BshFI GGCC 4 cut(s) 265, 588, 856, 1038
BshNI GGYRCC 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 808
BsiHKCI CYCGRG 2 cut(s) 626, 905
BsiSI CCGG 4 cut(s) 51, 63, 71, 149
BslFI GGGAC 2 cut(s) 966, 988
BslI CCNNNNNNNGG 5 cut(s) 77, 155, 672, 889, 1101
BsmAI GTCTC 1 cut(s) 450
BsmFI GGGAC 2 cut(s) 966, 988
BsnI GGCC 4 cut(s) 265, 588, 856, 1038
BsoBI CYCGRG 2 cut(s) 626, 905
Bsp120I GGGCCC 1 cut(s) 1036
Bsp1286I GDGCHC 2 cut(s) 808, 1040
Bsp143I GATC 2 cut(s) 97, 598
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 4 cut(s) 37, 78, 801, 1010
BspANI GGCC 4 cut(s) 265, 588, 856, 1038
BspCNI CTCAG 2 cut(s) 229, 238
BspFNI CGCG 1 cut(s) 801
BspHI TCATGA 2 cut(s) 175, 442
BspLI GGNNCC 6 cut(s) 16, 153, 198, 249, 663, 1038
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 1066
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 1 cut(s) 531
BspT107I GGYRCC 1 cut(s) 196
BsrI ACTGG 3 cut(s) 184, 857, 1067
BssECI CCNNGG 4 cut(s) 71, 154, 191, 940
BssMI GATC 2 cut(s) 97, 598
BssT1I CCWWGG 1 cut(s) 191
Bst2UI CCWGG 2 cut(s) 156, 942
Bst4CI ACNGT 2 cut(s) 461, 777
Bst6I CTCTTC 1 cut(s) 531
BstC8I GCNNGC 3 cut(s) 336, 408, 452
BstDEI CTNAG 3 cut(s) 225, 237, 653
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 3 cut(s) 95, 759, 1116
BstFNI CGCG 1 cut(s) 801
BstHHI GCGC 1 cut(s) 904
BstKTI GATC 2 cut(s) 100, 601
BstMAI GTCTC 1 cut(s) 450
BstMBI GATC 2 cut(s) 97, 598
BstNI CCWGG 2 cut(s) 156, 942
BstNSI RCATGY 1 cut(s) 1123
BstPAI GACNNNNGTC 1 cut(s) 303
BstSCI CCNGG 5 cut(s) 49, 62, 70, 154, 940
BstSFI CTRYAG 1 cut(s) 714
BstSLI GKGCMC 2 cut(s) 808, 1040
BstUI CGCG 1 cut(s) 801
BstV1I GCAGC 3 cut(s) 343, 700, 722
BsuRI GGCC 4 cut(s) 265, 588, 856, 1038
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 1020
BtrI CACGTC 2 cut(s) 427, 956
BtsCI GGATG 3 cut(s) 95, 759, 1116
BtsI GCAGTG 1 cut(s) 904
BtsIMutI CAGTG 3 cut(s) 466, 904, 1074
BveI ACCTGC 1 cut(s) 1066
Cac8I GCNNGC 3 cut(s) 336, 408, 452
CciI TCATGA 2 cut(s) 175, 442
CfoI GCGC 1 cut(s) 904
Cfr13I GGNCC 7 cut(s) 15, 93, 151, 661, 1036, 1037, 1064
Csp6I GTAC 1 cut(s) 1123
CviAII CATG 9 cut(s) 103, 176, 192, 218, 328, 443, 1021, 1096, 1120
CviQI GTAC 1 cut(s) 1123
DdeI CTNAG 3 cut(s) 225, 237, 653
DpnI GATC 2 cut(s) 99, 600
DpnII GATC 2 cut(s) 97, 598
EaeI YGGCCR 1 cut(s) 854
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 1040
Eco47I GGWCC 5 cut(s) 15, 93, 151, 661, 1064
Eco88I CYCGRG 2 cut(s) 626, 905
EcoO109I RGGNCCY 2 cut(s) 661, 1036
EcoRII CCWGG 2 cut(s) 154, 940
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 1040
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 9 cut(s) 106, 179, 195, 221, 331, 446, 1024, 1099, 1123
FalI AAGNNNNNCTT 4 cut(s) 903, 935, 961, 993
FaqI GGGAC 2 cut(s) 966, 988
FatI CATG 9 cut(s) 102, 175, 191, 217, 327, 442, 1020, 1095, 1119
FauI CCCGC 1 cut(s) 71
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 332, 711, 714
FokI GGATG 3 cut(s) 102, 766, 1123
FriOI GRGCYC 1 cut(s) 1040
Fsp4HI GCNGC 3 cut(s) 332, 711, 714
FspBI CTAG 2 cut(s) 420, 887
GlaI GCGC 1 cut(s) 903
GluI GCNGC 3 cut(s) 332, 711, 714
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 4 cut(s) 265, 588, 856, 1038
HapII CCGG 4 cut(s) 51, 63, 71, 149
HhaI GCGC 1 cut(s) 904
Hin1II CATG 9 cut(s) 106, 179, 195, 221, 331, 446, 1024, 1099, 1123
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HincII GTYRAC 2 cut(s) 47, 298
HindII GTYRAC 2 cut(s) 47, 298
HinfI GANTC 4 cut(s) 214, 416, 769, 998
HpaII CCGG 4 cut(s) 51, 63, 71, 149
HphI GGTGA 6 cut(s) 105, 170, 283, 823, 1040, 1090
Hpy166II GTNNAC 3 cut(s) 47, 298, 806
Hpy188I TCNGA 5 cut(s) 97, 207, 552, 694, 850
Hpy188III TCNNGA 8 cut(s) 176, 245, 344, 443, 626, 628, 875, 929
Hpy8I GTNNAC 3 cut(s) 47, 298, 806
Hpy99I CGWCG 2 cut(s) 23, 26
HpyAV CCTTC 5 cut(s) 126, 261, 539, 625, 1101
HpyCH4III ACNGT 2 cut(s) 461, 777
HpyCH4IV ACGT 5 cut(s) 135, 426, 604, 677, 955
HpyF3I CTNAG 3 cut(s) 225, 237, 653
HpySE526I ACGT 5 cut(s) 135, 426, 604, 677, 955
Hsp92II CATG 9 cut(s) 106, 179, 195, 221, 331, 446, 1024, 1099, 1123
HspAI GCGC 1 cut(s) 902
Kzo9I GATC 2 cut(s) 97, 598
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 39, 247
Lsp1109I GCAGC 3 cut(s) 343, 700, 722
LweI GCATC 7 cut(s) 230, 355, 375, 495, 837, 997, 1101
MaeI CTAG 2 cut(s) 420, 887
MaeII ACGT 5 cut(s) 135, 426, 604, 677, 955
MaeIII GTNAC 2 cut(s) 211, 427
MalI GATC 2 cut(s) 99, 600
MboI GATC 2 cut(s) 97, 598
MboII GAAGA 6 cut(s) 102, 548, 641, 647, 725, 923
MhlI GDGCHC 2 cut(s) 808, 1040
MlsI TGGCCA 1 cut(s) 856
MluCI AATT 4 cut(s) 30, 171, 764, 960
MluNI TGGCCA 1 cut(s) 856
MlyI GAGTC 2 cut(s) 208, 425
MmeI TCCRAC 1 cut(s) 530
Mox20I TGGCCA 1 cut(s) 856
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 856
MseI TTAA 1 cut(s) 1100
Msp20I TGGCCA 1 cut(s) 856
MspA1I CMGCKG 2 cut(s) 37, 713
MspI CCGG 4 cut(s) 51, 63, 71, 149
MspR9I CCNGG 5 cut(s) 51, 64, 72, 156, 942
MvaI CCWGG 2 cut(s) 156, 942
MvnI CGCG 1 cut(s) 801
NciI CCSGG 3 cut(s) 51, 64, 72
NcoI CCATGG 1 cut(s) 191
NdeII GATC 2 cut(s) 97, 598
NlaIII CATG 9 cut(s) 106, 179, 195, 221, 331, 446, 1024, 1099, 1123
NlaIV GGNNCC 6 cut(s) 16, 153, 198, 249, 663, 1038
NmuCI GTSAC 2 cut(s) 211, 427
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 1123
PaeR7I CTCGAG 2 cut(s) 626, 905
PagI TCATGA 2 cut(s) 175, 442
PaqCI CACCTGC 1 cut(s) 1066
PciI ACATGT 1 cut(s) 1119
PciSI GCTCTTC 1 cut(s) 531
PfeI GAWTC 2 cut(s) 769, 998
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 3 cut(s) 333, 712, 715
PleI GAGTC 2 cut(s) 208, 424
PpsI GAGTC 2 cut(s) 208, 424
PpuMI RGGWCCY 1 cut(s) 661
PscI ACATGT 1 cut(s) 1119
PshAI GACNNNNGTC 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 2 cut(s) 154, 940
PspGI CCWGG 2 cut(s) 154, 940
PspN4I GGNNCC 6 cut(s) 16, 153, 198, 249, 663, 1038
PspOMI GGGCCC 1 cut(s) 1036
PspPI GGNCC 7 cut(s) 15, 93, 151, 661, 1036, 1037, 1064
PspPPI RGGWCCY 1 cut(s) 661
PspXI VCTCGAGB 1 cut(s) 905
PstI CTGCAG 1 cut(s) 718
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 1 cut(s) 1124
RsaNI GTAC 1 cut(s) 1123
SalI GTCGAC 1 cut(s) 45
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 1 cut(s) 1100
SatI GCNGC 3 cut(s) 332, 711, 714
Sau3AI GATC 2 cut(s) 97, 598
Sau96I GGNCC 7 cut(s) 15, 93, 151, 661, 1036, 1037, 1064
SchI GAGTC 2 cut(s) 208, 425
ScrFI CCNGG 5 cut(s) 51, 64, 72, 156, 942
SduI GDGCHC 2 cut(s) 808, 1040
SfaNI GCATC 7 cut(s) 230, 355, 375, 495, 837, 997, 1101
SfcI CTRYAG 1 cut(s) 714
Sfr274I CTCGAG 2 cut(s) 626, 905
SinI GGWCC 5 cut(s) 15, 93, 151, 661, 1064
SlaI CTCGAG 2 cut(s) 626, 905
SmlI CTYRAG 3 cut(s) 413, 626, 905
SmoI CTYRAG 3 cut(s) 413, 626, 905
SpeI ACTAGT 1 cut(s) 886
Sse9I AATT 4 cut(s) 30, 171, 764, 960
SsiI CCGC 4 cut(s) 37, 78, 801, 1010
SspMI CTAG 2 cut(s) 420, 887
StyD4I CCNGG 5 cut(s) 49, 62, 70, 154, 940
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 461, 777
TaiI ACGT 5 cut(s) 138, 429, 607, 680, 958
TaqI TCGA 5 cut(s) 46, 307, 627, 817, 906
TasI AATT 4 cut(s) 30, 171, 764, 960
TatI WGTACW 1 cut(s) 1122
TfiI GAWTC 2 cut(s) 769, 998
Tru1I TTAA 1 cut(s) 1100
Tru9I TTAA 1 cut(s) 1100
TscAI CASTG 3 cut(s) 466, 904, 1074
TseFI GTSAC 2 cut(s) 211, 427
TseI GCWGC 3 cut(s) 331, 710, 713
Tsp45I GTSAC 2 cut(s) 211, 427
TspDTI ATGAA 5 cut(s) 17, 164, 192, 431, 1045
TspGWI ACGGA 2 cut(s) 7, 632
TspRI CASTG 3 cut(s) 466, 904, 1074
Van91I CCANNNNNTGG 1 cut(s) 672
VneI GTGCAC 1 cut(s) 804
VpaK11BI GGWCC 5 cut(s) 15, 93, 151, 661, 1064
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 1123
XhoI CTCGAG 2 cut(s) 626, 905
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 2 cut(s) 420, 887
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.