Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016652

Physical Location & Seq

Genomic Coordinates Reverse (-)

52552238 .. 52554701

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0379600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAACTAGCGTGGAAGAACAACAAGAAGCGGCCTTTGGCCACCGTATCCAAGTACCCGAACCTCCCTTTTGATCACAAAAACGACAACCCCAGTAATCAAAACGACACAGCAGACGGTGAGCTAAACAAGGAACAACACCATGAACCGCTCAGCGCTCGGAACGAGCCGTCAGTCTCTGAAGAAGAAGAAGAAGACGACGACGACGTTGCCAAACTCTTCAACTCCTTTCAATCCCAGGGAACTAAGCTCGCTGAGGATGGGAAGTACCGCGAAGCATTGGGCAAATGGGAGTCTGCTCTTATGTTGATGCCCAAAAGTGCAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGATGCCTGGAATGCAATAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCGTTCAAAGCTTTGACAAAGCATTAGCCATCAAGCCTGATTCAGAGGAGGCTCGAGATGACAGACATACTGCAATGAATCTCATGAAAAGACGAAAGCAGCTCCATTCATCAGGCTTAAGTCCTACAAGAAACCGTTATGCAGTGGGTGATAGCACTGATAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032991 GO:0034587 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043186 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045495 GO:0046483 GO:0046983 GO:0048519 GO:0050789 GO:0060255 GO:0060293 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:1990923

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 KH_1

Protein Analysis

216

Amino Acids

24.3

Weight (kDa)

5.46

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	114 - 175	9.3e-07	Tetratricopeptide repeat
TPR_CcmH_CycH	PF23914	139 - 179	4.3e-06	Cytochrome c-type biogenesis protein H TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25910 AT2G25910
fragaria_vesca	FvH4_2g32310
malus_domestica	MD08G1074400.v1.1
prunus_persica	Prupe.1G416100_v2.0.a1 Prupe.1G416100_v2.0.a1
pyrus_communis	pycom08g06140
rosa_chinensis	RchiOBHm_Chr6g0310381
rosa_laevigata	RLG00000010487
rosa_roxburghii	Rroxscaffold_7G00158600
rosa_rugosa	Rorug06G0379600
rosa_samantha	Rh6BG503400 Rh6CG508400
rosa_wichuraiana	Rw6G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	151
AccII	CGCG	1 cut(s)	273
AciI	CCGC	3 cut(s)	31, 149, 271
AcoI	YGGCCR	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	56, 269
AfeI	AGCGCT	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	223, 233, 488
AjnI	CCWGG	2 cut(s)	237, 371
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	6 cut(s)	124, 250, 401, 452, 492, 583
AluI	AGCT	6 cut(s)	124, 250, 401, 452, 492, 583
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	2 cut(s)	396, 534
Aor51HI	AGCGCT	1 cut(s)	157
AoxI	GGCC	2 cut(s)	32, 39
ApeKI	GCWGC	2 cut(s)	389, 580
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	131, 641
AvaI	CYCGRG	2 cut(s)	396, 534
BalI	TGGCCA	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	454
BauI	CACGAG	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	454
BbvCI	CCTCAGC	2 cut(s)	255, 426
BbvI	GCAGC	2 cut(s)	401, 592
BccI	CCATC	2 cut(s)	254, 518
BceAI	ACGGC	2 cut(s)	154, 467
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	2 cut(s)	239, 373
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	598
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	3 cut(s)	32, 390, 581
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	3 cut(s)	33, 391, 582
Bme1390I	CCNGG	2 cut(s)	239, 373
BmeT110I	CYCGRG	2 cut(s)	396, 534
BmiI	GGNNCC	2 cut(s)	414, 471
BmrFI	CCNGG	2 cut(s)	239, 373
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	300, 358
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	2 cut(s)	255, 426
Bpu1102I	GCTNAGC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	237, 238, 442
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	239, 373
BseDI	CCNNGG	3 cut(s)	237, 238, 442
BseGI	GGATG	2 cut(s)	265, 373
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	4 cut(s)	166, 246, 417, 467
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	401, 592
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	34, 41
BsiHKAI	GWGCWC	1 cut(s)	454
BsiHKCI	CYCGRG	2 cut(s)	396, 534
BsmAI	GTCTC	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	34, 41
BsoBI	CYCGRG	2 cut(s)	396, 534
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	73
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	3 cut(s)	31, 149, 271
BspANI	GGCC	2 cut(s)	34, 41
BspCNI	CTCAG	4 cut(s)	165, 247, 418, 466
BspFNI	CGCG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	564
BspLI	GGNNCC	2 cut(s)	414, 471
BspTI	CTTAAG	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	237, 238, 442
BssMI	GATC	1 cut(s)	73
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	2 cut(s)	239, 373
Bst4CI	ACNGT	3 cut(s)	46, 119, 617
Bst6I	CTCTTC	1 cut(s)	224
BstAFI	CTTAAG	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	5 cut(s)	152, 246, 255, 426, 453
BstEII	GGTNACC	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	265, 373
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 386, 398
BstNI	CCWGG	2 cut(s)	239, 373
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	237, 371
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	401, 592
BstV2I	GAAGAC	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	34, 41
BtsCI	GGATG	2 cut(s)	265, 373
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	630, 636
Cac8I	GCNNGC	1 cut(s)	252
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	1 cut(s)	564
CfoI	GCGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	55, 268
CviAII	CATG	5 cut(s)	143, 420, 432, 565, 648
CviQI	GTAC	2 cut(s)	55, 268
DdeI	CTNAG	5 cut(s)	152, 246, 255, 426, 453
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	454
Eco47III	AGCGCT	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	2 cut(s)	396, 534
Eco91I	GGTNACC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	237, 371
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	5 cut(s)	146, 423, 435, 568, 651
FaiI	YATR	8 cut(s)	144, 305, 421, 433, 549, 566, 621, 649
FatI	CATG	5 cut(s)	142, 419, 431, 564, 647
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	3 cut(s)	32, 390, 581
FokI	GGATG	2 cut(s)	272, 380
FriOI	GRGCYC	1 cut(s)	454
Fsp4HI	GCNGC	3 cut(s)	32, 390, 581
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	3 cut(s)	32, 390, 581
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	34, 41
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	5 cut(s)	146, 423, 435, 568, 651
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	3 cut(s)	293, 521, 559
HphI	GGTGA	2 cut(s)	131, 641
Hpy188I	TCNGA	3 cut(s)	162, 181, 526
Hpy188III	TCNNGA	2 cut(s)	536, 565
Hpy99I	CGWCG	3 cut(s)	203, 206, 209
HpyAV	CCTTC	2 cut(s)	334, 426
HpyCH4III	ACNGT	3 cut(s)	46, 119, 617
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	323, 380, 554, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 386, 398
HpyF3I	CTNAG	5 cut(s)	152, 246, 255, 426, 453
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	146, 423, 435, 568, 651
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	412, 588
LpnPI	CCDG	8 cut(s)	106, 224, 251, 358, 385, 486, 531, 579
Lsp1109I	GCAGC	2 cut(s)	401, 592
LweI	GCATC	2 cut(s)	300, 358
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	75
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	1 cut(s)	73
MboII	GAAGA	7 cut(s)	28, 194, 197, 200, 203, 206, 211
MhlI	GDGCHC	1 cut(s)	454
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	1 cut(s)	360
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	74, 250, 421, 520, 523
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	2 cut(s)	458, 599
Msp20I	TGGCCA	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	598
MspR9I	CCNGG	2 cut(s)	239, 373
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	2 cut(s)	239, 373
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	377, 386, 398
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	5 cut(s)	146, 423, 435, 568, 651
NlaIV	GGNNCC	2 cut(s)	414, 471
PaeR7I	CTCGAG	2 cut(s)	396, 534
PagI	TCATGA	1 cut(s)	564
PasI	CCCWGGG	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	521, 559
PkrI	GCNGC	3 cut(s)	33, 391, 582
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	454
Psp6I	CCWGG	2 cut(s)	237, 371
PspEI	GGTNACC	1 cut(s)	436
PspGI	CCWGG	2 cut(s)	237, 371
PspN4I	GGNNCC	2 cut(s)	414, 471
PspXI	VCTCGAGB	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	56, 269
RsaNI	GTAC	2 cut(s)	55, 268
SacI	GAGCTC	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	458, 599
SatI	GCNGC	3 cut(s)	32, 390, 581
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	239, 373
SduI	GDGCHC	1 cut(s)	454
SetI	ASST	9 cut(s)	66, 126, 210, 252, 403, 454, 475, 494, 585
SfaNI	GCATC	2 cut(s)	300, 358
SfcI	CTRYAG	1 cut(s)	402
Sfr274I	CTCGAG	2 cut(s)	396, 534
SlaI	CTCGAG	2 cut(s)	396, 534
SmlI	CTYRAG	3 cut(s)	396, 534, 598
SmoI	CTYRAG	3 cut(s)	396, 534, 598
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	3 cut(s)	31, 149, 271
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	454
StyD4I	CCNGG	2 cut(s)	237, 371
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	46, 119, 617
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	397, 535
TasI	AATT	1 cut(s)	360
TauI	GCSGC	1 cut(s)	34
TfiI	GAWTC	2 cut(s)	521, 559
Tru1I	TTAA	2 cut(s)	458, 599
Tru9I	TTAA	2 cut(s)	458, 599
TscAI	CASTG	2 cut(s)	630, 643
TseI	GCWGC	2 cut(s)	389, 580
TspDTI	ATGAA	6 cut(s)	17, 159, 408, 572, 579, 581
TspRI	CASTG	2 cut(s)	630, 643
Vha464I	CTTAAG	1 cut(s)	598
XhoI	CTCGAG	2 cut(s)	396, 534
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.