Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016652

Physical Location & Seq

Genomic Coordinates Forward (+)

36135529 .. 36139192

Gene Structure 3664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G416100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCCTCTTTACCTCCTCCATATCAGACACACCTTCCTCTATCGCCTGACCCAGGTGAGAAACCCCTAAATTCTGAACCCCAGTTGCCGCTGGTTCCTATTCATGTAGTCACTCGTGCATCTCAGCTTCCTGCCGAGTTCCTGGAGCCATCAGCTGAAAGGCAATTGGTAATTGGCTTTGATTGTGAGGGAGTTGACTTGTGCCGTCATGGAACACTCTGTATCATGCAGCTTGCATTTCCAGATGCTATATATCTGGTTGATGCCATTCAGGGAGGGGCTATGCTTATCCAAGCCTGTAAGCCTGCACTTGAGTCTAGCTACATCACCAAAGTTATTCACGACTGCAAACGAGATAGCGAGGCCTTGTATTTTCAGTTTGGCATCAAGTTGAACAATGTTGTAGATACTCAGATTGCCTATTCGCTGATAGAGGAACAAGAAGGGAGGAAAAGATTGCTGGATGATTATATATCATTTGTGGGCCTCCTTGCTGATCCACGCTATTGTGGAATATCTTATCTTGAGAAGGAAGAAGTTCGATTCCTCCTTAGGCAGGACCCCAACTTTTGGACATACAGACCTTTATCTGAACAGATGGTCCGTGCAGCTGCAGATGATGTCCGCTTTCTTCTGTATATCTATTACAAGATGATGGAGAAATTGAATCAACAGTCATTATGGTATCTTGCAGTTCGAGGTGCTCTCTATTGCAGATGTTTTTGCATCAACGACAACAATTTTGCAGACTGGCCACCTCTCCCCCCTATTCCAGCAGATAACCTAATAGTGGATGGCAATGCTCCGGAGGAAGAAATCCTTTCAGTGCTTGATGTTCCTCCAGGAAAGATGGGACGTGTTATCGGGAGAAGAGGAGCTTCCATTTTGTCAATAAAGGAATCTTGCAATGCGGAAATTCTCATTGGAGGTGATAAGGGCCCACCCGATAAGGTGTTCATCATAGGACCAGTGAAGCAAGTGAGGAAAGCAGAAGCCATGTTAAGGGGGAAGATGATGGACGTGTACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032991 GO:0034587 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043186 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045495 GO:0046483 GO:0046983 GO:0048519 GO:0050789 GO:0060255 GO:0060293 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:1990923

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 KH_1

Protein Analysis

344

Amino Acids

38.62

Weight (kDa)

5.13

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25910 AT2G25910
fragaria_vesca	FvH4_2g32310
malus_domestica	MD08G1074400.v1.1
prunus_persica	Prupe.1G416100_v2.0.a1 Prupe.1G416100_v2.0.a1
pyrus_communis	pycom08g06140
rosa_chinensis	RchiOBHm_Chr6g0310381
rosa_laevigata	RLG00000010487
rosa_roxburghii	Rroxscaffold_7G00158600
rosa_rugosa	Rorug06G0379600
rosa_samantha	Rh6BG503400 Rh6CG508400
rosa_wichuraiana	Rw6G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	570
AccIII	TCCGGA	1 cut(s)	805
AciI	CCGC	3 cut(s)	89, 625, 911
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	2 cut(s)	70, 915
AfaI	GTAC	1 cut(s)	1025
AfiI	CCNNNNNNNGG	5 cut(s)	53, 556, 570, 790, 1002
AflIII	ACRYGT	2 cut(s)	856, 1020
AgsI	TTSAA	2 cut(s)	394, 667
AjiI	CACGTC	2 cut(s)	857, 1021
AjnI	CCWGG	3 cut(s)	52, 141, 841
AjuI	GAANNNNNNNTTGG	2 cut(s)	906, 938
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
AluBI	AGCT	6 cut(s)	127, 155, 232, 321, 611, 878
AluI	AGCT	6 cut(s)	127, 155, 232, 321, 611, 878
Alw21I	GWGCWC	1 cut(s)	706
AlwI	GGATC	1 cut(s)	491
Aor13HI	TCCGGA	1 cut(s)	805
AoxI	GGCC	5 cut(s)	3, 363, 484, 752, 937
ApaI	GGGCCC	1 cut(s)	941
ApeKI	GCWGC	3 cut(s)	229, 608, 611
ApoI	RAATTY	2 cut(s)	70, 915
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
Asp700I	GAANNNNTTC	1 cut(s)	537
AspS9I	GGNCC	6 cut(s)	484, 559, 601, 937, 938, 965
AsuHPI	GGTGA	3 cut(s)	68, 319, 941
AvaII	GGWCC	3 cut(s)	559, 601, 965
AxyI	CCTNAGG	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	941
BalI	TGGCCA	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	941
BauI	CACGAG	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	3 cut(s)	241, 598, 620
BccI	CCATC	6 cut(s)	157, 592, 649, 788, 844, 1009
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	3 cut(s)	54, 143, 843
BfaI	CTAG	2 cut(s)	318, 1030
BfmI	CTRYAG	1 cut(s)	612
BisI	GCNGC	4 cut(s)	89, 230, 609, 612
BlsI	GCNGC	4 cut(s)	90, 231, 610, 613
Bme1390I	CCNGG	3 cut(s)	54, 143, 843
Bme18I	GGWCC	3 cut(s)	559, 601, 965
BmgBI	CACGTC	2 cut(s)	857, 1021
BmgT120I	GGNCC	6 cut(s)	484, 559, 601, 937, 938, 965
BmiI	GGNNCC	4 cut(s)	96, 147, 561, 939
BmrFI	CCNGG	3 cut(s)	54, 143, 843
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	5 cut(s)	128, 235, 253, 393, 735
BmuI	ACTGGG	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	690, 722
BpmI	CTGGAG	2 cut(s)	164, 825
BpuEI	CTTGAG	2 cut(s)	332, 545
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 556, 570, 790, 1002
Bse1I	ACTGG	3 cut(s)	82, 755, 968
Bse21I	CCTNAGG	1 cut(s)	551
Bse3DI	GCAATG	2 cut(s)	805, 913
BseAI	TCCGGA	1 cut(s)	805
BseBI	CCWGG	3 cut(s)	54, 143, 843
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	2 cut(s)	469, 799
BseLI	CCNNNNNNNGG	5 cut(s)	53, 556, 570, 790, 1002
BseMI	GCAATG	2 cut(s)	805, 913
BseMII	CTCAG	2 cut(s)	137, 425
BseNI	ACTGG	3 cut(s)	82, 755, 968
BseRI	GAGGAG	2 cut(s)	6, 888
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	3 cut(s)	241, 598, 620
BsgI	GTGCAG	2 cut(s)	291, 627
BshFI	GGCC	5 cut(s)	5, 365, 486, 754, 939
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	806
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	5 cut(s)	53, 556, 570, 790, 1002
BsmFI	GGGAC	1 cut(s)	867
BsnI	GGCC	5 cut(s)	5, 365, 486, 754, 939
Bsp120I	GGGCCC	1 cut(s)	937
Bsp1286I	GDGCHC	2 cut(s)	706, 941
Bsp13I	TCCGGA	1 cut(s)	805
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	3 cut(s)	89, 625, 911
BspANI	GGCC	5 cut(s)	5, 365, 486, 754, 939
BspCNI	CTCAG	2 cut(s)	136, 424
BspEI	TCCGGA	1 cut(s)	805
BspLI	GGNNCC	4 cut(s)	96, 147, 561, 939
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	1 cut(s)	491
BsrDI	GCAATG	2 cut(s)	805, 913
BsrI	ACTGG	3 cut(s)	82, 755, 968
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	496
BssSI	CACGAG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	114
Bst2UI	CCWGG	3 cut(s)	54, 143, 843
Bst4CI	ACNGT	1 cut(s)	675
Bst6I	CTCTTC	1 cut(s)	865
BstC8I	GCNNGC	2 cut(s)	234, 306
BstDEI	CTNAG	3 cut(s)	123, 411, 551
BstENI	CCTNNNNNAGG	2 cut(s)	51, 554
BstF5I	GGATG	2 cut(s)	469, 799
BstKTI	GATC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	496
BstNI	CCWGG	3 cut(s)	54, 143, 843
BstSCI	CCNGG	3 cut(s)	52, 141, 841
BstSFI	CTRYAG	1 cut(s)	612
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	3 cut(s)	241, 598, 620
Bsu36I	CCTNAGG	1 cut(s)	551
BsuRI	GGCC	5 cut(s)	5, 365, 486, 754, 939
BtrI	CACGTC	2 cut(s)	857, 1021
BtsCI	GGATG	2 cut(s)	469, 799
BtsIMutI	CAGTG	2 cut(s)	831, 975
Cac8I	GCNNGC	2 cut(s)	234, 306
Cfr13I	GGNCC	6 cut(s)	484, 559, 601, 937, 938, 965
Csp6I	GTAC	1 cut(s)	1024
CviAII	CATG	4 cut(s)	104, 209, 226, 997
CviQI	GTAC	1 cut(s)	1024
DdeI	CTNAG	3 cut(s)	123, 411, 551
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	865
EarI	CTCTTC	1 cut(s)	865
Eco147I	AGGCCT	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	941
Eco47I	GGWCC	3 cut(s)	559, 601, 965
Eco81I	CCTNAGG	1 cut(s)	551
EcoNI	CCTNNNNNAGG	2 cut(s)	51, 554
EcoO109I	RGGNCCY	2 cut(s)	559, 937
EcoRII	CCWGG	3 cut(s)	52, 141, 841
EcoT38I	GRGCYC	1 cut(s)	941
FaeI	CATG	4 cut(s)	107, 212, 229, 1000
FalI	AAGNNNNNCTT	4 cut(s)	804, 836, 862, 894
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	4 cut(s)	103, 208, 225, 996
Fnu4HI	GCNGC	4 cut(s)	89, 230, 609, 612
FokI	GGATG	2 cut(s)	476, 806
FriOI	GRGCYC	1 cut(s)	941
Fsp4HI	GCNGC	4 cut(s)	89, 230, 609, 612
FspBI	CTAG	2 cut(s)	318, 1030
GluI	GCNGC	4 cut(s)	89, 230, 609, 612
GsuI	CTGGAG	2 cut(s)	164, 825
HaeIII	GGCC	5 cut(s)	5, 365, 486, 754, 939
HapII	CCGG	1 cut(s)	806
Hin1II	CATG	4 cut(s)	107, 212, 229, 1000
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	314, 543, 667, 899
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	3 cut(s)	68, 319, 941
Hpy166II	GTNNAC	2 cut(s)	196, 1024
Hpy188I	TCNGA	4 cut(s)	27, 76, 414, 592
Hpy188III	TCNNGA	5 cut(s)	242, 341, 524, 806, 865
Hpy8I	GTNNAC	2 cut(s)	196, 1024
HpyAV	CCTTC	3 cut(s)	44, 437, 523
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4IV	ACGT	2 cut(s)	856, 1020
HpyF3I	CTNAG	3 cut(s)	123, 411, 551
HpySE526I	ACGT	2 cut(s)	856, 1020
Hsp92II	CATG	4 cut(s)	107, 212, 229, 1000
Kpn2I	TCCGGA	1 cut(s)	805
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	3 cut(s)	145, 808, 875
Lsp1109I	GCAGC	3 cut(s)	241, 598, 620
LweI	GCATC	5 cut(s)	128, 235, 253, 393, 735
MaeI	CTAG	2 cut(s)	318, 1030
MaeII	ACGT	2 cut(s)	856, 1020
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	5 cut(s)	545, 623, 824, 882, 1021
MfeI	CAATTG	1 cut(s)	164
MhlI	GDGCHC	2 cut(s)	706, 941
MlsI	TGGCCA	1 cut(s)	754
MluCI	AATT	6 cut(s)	70, 164, 171, 662, 739, 915
MluNI	TGGCCA	1 cut(s)	754
MlyI	GAGTC	1 cut(s)	323
Mox20I	TGGCCA	1 cut(s)	754
MroI	TCCGGA	1 cut(s)	805
MroXI	GAANNNNTTC	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	1 cut(s)	1001
Msp20I	TGGCCA	1 cut(s)	754
MspA1I	CMGCKG	3 cut(s)	91, 155, 611
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	3 cut(s)	54, 143, 843
MunI	CAATTG	1 cut(s)	164
MvaI	CCWGG	3 cut(s)	54, 143, 843
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	4 cut(s)	107, 212, 229, 1000
NlaIV	GGNNCC	4 cut(s)	96, 147, 561, 939
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	543, 667, 899
PflMI	CCANNNNNTGG	1 cut(s)	570
PfoI	TCCNGGA	2 cut(s)	141, 841
PkrI	GCNGC	4 cut(s)	90, 231, 610, 613
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PpuMI	RGGWCCY	1 cut(s)	559
Psp5II	RGGWCCY	1 cut(s)	559
Psp6I	CCWGG	3 cut(s)	52, 141, 841
PspGI	CCWGG	3 cut(s)	52, 141, 841
PspN4I	GGNNCC	4 cut(s)	96, 147, 561, 939
PspOMI	GGGCCC	1 cut(s)	937
PspPI	GGNCC	6 cut(s)	484, 559, 601, 937, 938, 965
PspPPI	RGGWCCY	1 cut(s)	559
PstI	CTGCAG	1 cut(s)	616
PvuII	CAGCTG	2 cut(s)	155, 611
RsaI	GTAC	1 cut(s)	1025
RsaNI	GTAC	1 cut(s)	1024
SaqAI	TTAA	1 cut(s)	1001
SatI	GCNGC	4 cut(s)	89, 230, 609, 612
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	6 cut(s)	484, 559, 601, 937, 938, 965
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	3 cut(s)	54, 143, 843
SduI	GDGCHC	2 cut(s)	706, 941
SfaNI	GCATC	5 cut(s)	128, 235, 253, 393, 735
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	3 cut(s)	559, 601, 965
SmlI	CTYRAG	2 cut(s)	311, 524
SmoI	CTYRAG	2 cut(s)	311, 524
Sse9I	AATT	6 cut(s)	70, 164, 171, 662, 739, 915
SseBI	AGGCCT	1 cut(s)	365
SsiI	CCGC	3 cut(s)	89, 625, 911
SspMI	CTAG	2 cut(s)	318, 1030
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	3 cut(s)	52, 141, 841
TaaI	ACNGT	1 cut(s)	675
TaiI	ACGT	2 cut(s)	859, 1023
TaqI	TCGA	2 cut(s)	541, 697
TasI	AATT	6 cut(s)	70, 164, 171, 662, 739, 915
TatI	WGTACW	1 cut(s)	1023
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	3 cut(s)	543, 667, 899
Tru1I	TTAA	1 cut(s)	1001
Tru9I	TTAA	1 cut(s)	1001
TscAI	CASTG	2 cut(s)	831, 975
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	229, 608, 611
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	92, 946
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	2 cut(s)	831, 975
Van91I	CCANNNNNTGG	1 cut(s)	570
VpaK11BI	GGWCC	3 cut(s)	559, 601, 965
XagI	CCTNNNNNAGG	2 cut(s)	51, 554
XapI	RAATTY	2 cut(s)	70, 915
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	318, 1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.