Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016652

Physical Location & Seq

Genomic Coordinates Forward (+)

4711096 .. 4714674

Gene Structure 3579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCCTCTGTACCTTCTCCTTTACAGACTCACCTTCCTCTCTCGCCTGGCCCAGGTGAGAAACCCCTAAATCATGAAACTCAGTTGCCATTGGCTCCTATTCGTATAGTCACTCATGCATCTCAGCTGCCTGCTGAGTTCTTGCAGCCCTCAGCTGAAAGGCCATTTGTCATTGGTTTCGATTGTGAGGGAGTTGACCTCTGTCGCCATGGAACTCTCTGTATCATGCAGCTTGCATTTCCAGATGCTATATATCTGGTTGATGCCATTCAGGGAGGGGTGATGCTGATCAATGCCTGTAAGCCTGCACTTGAGTCTTCCTATATCACCAAAGTCATTCATGATTGCAAACGAGATAGTGAGGCCCTGTACTTTCAGTTTGGCATCAAGTTGAACAATGTTGTAGATACCCAGATTGCTTATTCGCTGATAGAGGAGCAAGAAGGACGGAAAAGATTGCTAGATGATTATATATCATTCGTTGGCCTCCTTGCTGATCCACGCTATTGTGGAATATCTTATCTTGAGAAGGAAGAAGTTCGTTTCCTCCTTAGACAGGATCCCAACTTTTGGACCTACAGACCTTTATCTGAACAGATGGTCCGCGCAGCTGCAGATGATGTCCGCTTTCTTCTGTATATCTATTACAAGATGATGGCGAAATTGAATCAACAGTCATTATGGTCACTTGCAGTTCGTGGTGCGCTCTACTGCCGCTGTTTTTGCATCAGCGATAATAATTTTGCAGACTGGCCATCTCTCCCCCCTATTCCAGATAACCTTAAAGTGGAGGGCAATGCTCCAGAGGAAGAAATCCTTTCAGTTCTTGATGTTCCTCCGGGAAAGATGGGCCGTGTTATCGGGAGAAGAGGATCTTCCATCTTGTCAATAAAAGAGTCTTGCAATGCTGAAATTTTCATGGGAAGCGATAAGGGTCCGCCGGATAAGGTGTTCATCATCGGACCAGTGAAGCAGGTGAGGAAAGCAGAAGCCATGTTAAGGGGGAAGATGATGGACGTGCAGTACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0031047 GO:0032991 GO:0034587 GO:0034641 GO:0034660 GO:0035770 GO:0036464 GO:0042802 GO:0042803 GO:0043170 GO:0043186 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045495 GO:0046483 GO:0046983 GO:0048519 GO:0050789 GO:0060255 GO:0060293 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904 GO:1990923

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 KH_1

Protein Analysis

344

Amino Acids

38.55

Weight (kDa)

5.67

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25910 AT2G25910
fragaria_vesca	FvH4_2g32310
malus_domestica	MD08G1074400.v1.1
prunus_persica	Prupe.1G416100_v2.0.a1 Prupe.1G416100_v2.0.a1
pyrus_communis	pycom08g06140
rosa_chinensis	RchiOBHm_Chr6g0310381
rosa_laevigata	RLG00000010487
rosa_roxburghii	Rroxscaffold_7G00158600
rosa_rugosa	Rorug06G0379600
rosa_samantha	Rh6BG503400 Rh6CG508400
rosa_wichuraiana	Rw6G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	964
Acc36I	ACCTGC	1 cut(s)	964
AccB7I	CCANNNNNTGG	1 cut(s)	570
AccII	CGCG	1 cut(s)	606
AciI	CCGC	4 cut(s)	604, 625, 715, 938
AclWI	GGATC	4 cut(s)	491, 554, 567, 880
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	912
AfaI	GTAC	3 cut(s)	12, 371, 1025
AfiI	CCNNNNNNNGG	5 cut(s)	53, 556, 570, 787, 999
AgsI	TTSAA	2 cut(s)	394, 667
AjiI	CACGTC	1 cut(s)	1018
AjnI	CCWGG	2 cut(s)	46, 52
AloI	GAACNNNNNNTCC	4 cut(s)	585, 617, 935, 967
AluBI	AGCT	4 cut(s)	127, 155, 232, 611
AluI	AGCT	4 cut(s)	127, 155, 232, 611
AlwI	GGATC	4 cut(s)	491, 554, 567, 880
AoxI	GGCC	7 cut(s)	3, 49, 161, 363, 484, 752, 850
ApeKI	GCWGC	5 cut(s)	127, 145, 229, 608, 611
ApoI	RAATTY	1 cut(s)	912
Asp700I	GAANNNNTTC	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	608, 706
AspS9I	GGNCC	7 cut(s)	50, 364, 573, 601, 850, 935, 962
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	5 cut(s)	23, 68, 292, 319, 988
AvaII	GGWCC	4 cut(s)	573, 601, 935, 962
BalI	TGGCCA	1 cut(s)	754
BamHI	GGATCC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	151
BbvI	GCAGC	5 cut(s)	114, 157, 241, 598, 620
BccI	CCATC	6 cut(s)	592, 649, 763, 841, 887, 1006
BceAI	ACGGC	1 cut(s)	837
BciT130I	CCWGG	2 cut(s)	48, 54
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	840
BfaI	CTAG	2 cut(s)	461, 1030
BfmI	CTRYAG	2 cut(s)	577, 612
BfuAI	ACCTGC	1 cut(s)	964
BisI	GCNGC	6 cut(s)	128, 146, 230, 609, 612, 715
BlsI	GCNGC	6 cut(s)	129, 147, 231, 610, 613, 716
BmcAI	AGTACT	1 cut(s)	1025
Bme1390I	CCNGG	3 cut(s)	48, 54, 840
Bme18I	GGWCC	4 cut(s)	573, 601, 935, 962
BmgBI	CACGTC	1 cut(s)	1018
BmgT120I	GGNCC	7 cut(s)	50, 364, 573, 601, 850, 935, 962
BmiI	GGNNCC	3 cut(s)	96, 561, 936
BmrFI	CCNGG	3 cut(s)	48, 54, 840
BmsI	GCATC	6 cut(s)	128, 235, 253, 273, 393, 735
BoxI	GACNNNNGTC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
BpmI	CTGGAG	1 cut(s)	786
Bpu10I	CCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	2 cut(s)	332, 545
BpuMI	CCSGG	1 cut(s)	840
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	52, 208
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 556, 570, 787, 999
Bse1I	ACTGG	2 cut(s)	755, 965
Bse3DI	GCAATG	2 cut(s)	802, 910
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	48, 54
BseDI	CCNNGG	2 cut(s)	52, 208
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	5 cut(s)	53, 556, 570, 787, 999
BseMI	GCAATG	2 cut(s)	802, 910
BseMII	CTCAG	4 cut(s)	95, 126, 137, 165
BseNI	ACTGG	2 cut(s)	755, 965
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	5 cut(s)	114, 157, 241, 598, 620
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	7 cut(s)	5, 51, 163, 365, 486, 754, 852
BsiSI	CCGG	2 cut(s)	839, 941
BslI	CCNNNNNNNGG	5 cut(s)	53, 556, 570, 787, 999
BsnI	GGCC	7 cut(s)	5, 51, 163, 365, 486, 754, 852
Bsp143I	GATC	4 cut(s)	288, 496, 559, 872
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	4 cut(s)	604, 625, 715, 938
BspANI	GGCC	7 cut(s)	5, 51, 163, 365, 486, 754, 852
BspCNI	CTCAG	4 cut(s)	94, 127, 136, 164
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	2 cut(s)	73, 340
BspLI	GGNNCC	3 cut(s)	96, 561, 936
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	964
BspPI	GGATC	4 cut(s)	491, 554, 567, 880
BsrDI	GCAATG	2 cut(s)	802, 910
BsrI	ACTGG	2 cut(s)	755, 965
BssECI	CCNNGG	2 cut(s)	52, 208
BssMI	GATC	4 cut(s)	288, 496, 559, 872
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	48, 54
Bst4CI	ACNGT	1 cut(s)	675
Bst6I	CTCTTC	1 cut(s)	862
BstC8I	GCNNGC	3 cut(s)	132, 234, 306
BstDEI	CTNAG	5 cut(s)	81, 123, 135, 151, 551
BstDSI	CCRYGG	1 cut(s)	208
BstENI	CCTNNNNNAGG	2 cut(s)	51, 554
BstFNI	CGCG	1 cut(s)	606
BstHHI	GCGC	2 cut(s)	608, 706
BstKTI	GATC	4 cut(s)	291, 499, 562, 875
BstMBI	GATC	4 cut(s)	288, 496, 559, 872
BstMWI	GCNNNNNNNGC	1 cut(s)	723
BstNI	CCWGG	2 cut(s)	48, 54
BstPAI	GACNNNNGTC	1 cut(s)	201
BstSCI	CCNGG	3 cut(s)	46, 52, 838
BstSFI	CTRYAG	2 cut(s)	577, 612
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	5 cut(s)	114, 157, 241, 598, 620
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	2 cut(s)	559, 872
BstYI	RGATCY	2 cut(s)	559, 872
BsuRI	GGCC	7 cut(s)	5, 51, 163, 365, 486, 754, 852
BtgI	CCRYGG	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	1018
BtsIMutI	CAGTG	1 cut(s)	972
BveI	ACCTGC	1 cut(s)	964
Cac8I	GCNNGC	3 cut(s)	132, 234, 306
CciI	TCATGA	2 cut(s)	73, 340
CfoI	GCGC	2 cut(s)	608, 706
Cfr13I	GGNCC	7 cut(s)	50, 364, 573, 601, 850, 935, 962
Csp6I	GTAC	3 cut(s)	11, 370, 1024
CviAII	CATG	7 cut(s)	74, 116, 209, 226, 341, 919, 994
CviQI	GTAC	3 cut(s)	11, 370, 1024
DdeI	CTNAG	5 cut(s)	81, 123, 135, 151, 551
DpnI	GATC	4 cut(s)	290, 498, 561, 874
DpnII	GATC	4 cut(s)	288, 496, 559, 872
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
EciI	GGCGGA	1 cut(s)	927
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	4 cut(s)	573, 601, 935, 962
EcoNI	CCTNNNNNAGG	2 cut(s)	51, 554
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	46, 52
EcoT14I	CCWWGG	1 cut(s)	208
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	7 cut(s)	77, 119, 212, 229, 344, 922, 997
FalI	AAGNNNNNCTT	4 cut(s)	801, 833, 859, 891
FatI	CATG	7 cut(s)	73, 115, 208, 225, 340, 918, 993
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	6 cut(s)	128, 146, 230, 609, 612, 715
Fsp4HI	GCNGC	6 cut(s)	128, 146, 230, 609, 612, 715
FspBI	CTAG	2 cut(s)	461, 1030
GlaI	GCGC	2 cut(s)	607, 705
GluI	GCNGC	6 cut(s)	128, 146, 230, 609, 612, 715
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	7 cut(s)	5, 51, 163, 365, 486, 754, 852
HapII	CCGG	2 cut(s)	839, 941
HhaI	GCGC	2 cut(s)	608, 706
Hin1II	CATG	7 cut(s)	77, 119, 212, 229, 344, 922, 997
Hin6I	GCGC	2 cut(s)	606, 704
HinP1I	GCGC	2 cut(s)	606, 704
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	28, 314, 667, 896
HpaII	CCGG	2 cut(s)	839, 941
HphI	GGTGA	5 cut(s)	23, 68, 292, 319, 988
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	2 cut(s)	592, 962
Hpy188III	TCNNGA	8 cut(s)	74, 242, 341, 524, 773, 803, 827, 862
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	4 cut(s)	24, 44, 437, 523
HpyCH4III	ACNGT	1 cut(s)	675
HpyCH4IV	ACGT	1 cut(s)	1017
HpyF10VI	GCNNNNNNNGC	1 cut(s)	723
HpyF3I	CTNAG	5 cut(s)	81, 123, 135, 151, 551
HpySE526I	ACGT	1 cut(s)	1017
Hsp92II	CATG	7 cut(s)	77, 119, 212, 229, 344, 922, 997
HspAI	GCGC	2 cut(s)	606, 704
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	288, 496, 559, 872
LmnI	GCTCC	3 cut(s)	100, 436, 805
Lsp1109I	GCAGC	5 cut(s)	114, 157, 241, 598, 620
LweI	GCATC	6 cut(s)	128, 235, 253, 273, 393, 735
MaeI	CTAG	2 cut(s)	461, 1030
MaeII	ACGT	1 cut(s)	1017
MaeIII	GTNAC	2 cut(s)	109, 684
MalI	GATC	4 cut(s)	290, 498, 561, 874
MboI	GATC	4 cut(s)	288, 496, 559, 872
MboII	GAAGA	7 cut(s)	309, 545, 623, 821, 867, 879, 1018
MflI	RGATCY	2 cut(s)	559, 872
MlsI	TGGCCA	1 cut(s)	754
MluCI	AATT	3 cut(s)	662, 739, 912
MluNI	TGGCCA	1 cut(s)	754
MlyI	GAGTC	3 cut(s)	22, 323, 905
Mox20I	TGGCCA	1 cut(s)	754
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	537
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	2 cut(s)	783, 998
Msp20I	TGGCCA	1 cut(s)	754
MspA1I	CMGCKG	4 cut(s)	127, 155, 611, 717
MspI	CCGG	2 cut(s)	839, 941
MspR9I	CCNGG	3 cut(s)	48, 54, 840
MvaI	CCWGG	2 cut(s)	48, 54
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	1 cut(s)	723
NciI	CCSGG	1 cut(s)	840
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	4 cut(s)	288, 496, 559, 872
NlaIII	CATG	7 cut(s)	77, 119, 212, 229, 344, 922, 997
NlaIV	GGNNCC	3 cut(s)	96, 561, 936
NmuCI	GTSAC	2 cut(s)	109, 684
NsiI	ATGCAT	1 cut(s)	121
PagI	TCATGA	2 cut(s)	73, 340
PaqCI	CACCTGC	1 cut(s)	964
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	667
PflMI	CCANNNNNTGG	1 cut(s)	570
PfoI	TCCNGGA	1 cut(s)	838
PkrI	GCNGC	6 cut(s)	129, 147, 231, 610, 613, 716
PleI	GAGTC	3 cut(s)	22, 322, 904
PpsI	GAGTC	3 cut(s)	22, 322, 904
PshAI	GACNNNNGTC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	46, 52
PspGI	CCWGG	2 cut(s)	46, 52
PspN4I	GGNNCC	3 cut(s)	96, 561, 936
PspPI	GGNCC	7 cut(s)	50, 364, 573, 601, 850, 935, 962
PstI	CTGCAG	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	559, 872
PvuII	CAGCTG	3 cut(s)	127, 155, 611
RsaI	GTAC	3 cut(s)	12, 371, 1025
RsaNI	GTAC	3 cut(s)	11, 370, 1024
SaqAI	TTAA	2 cut(s)	783, 998
SatI	GCNGC	6 cut(s)	128, 146, 230, 609, 612, 715
Sau3AI	GATC	4 cut(s)	288, 496, 559, 872
Sau96I	GGNCC	7 cut(s)	50, 364, 573, 601, 850, 935, 962
ScaI	AGTACT	1 cut(s)	1025
SchI	GAGTC	3 cut(s)	22, 323, 905
ScrFI	CCNGG	3 cut(s)	48, 54, 840
SfaNI	GCATC	6 cut(s)	128, 235, 253, 273, 393, 735
SfcI	CTRYAG	2 cut(s)	577, 612
SinI	GGWCC	4 cut(s)	573, 601, 935, 962
SmlI	CTYRAG	2 cut(s)	311, 524
SmoI	CTYRAG	2 cut(s)	311, 524
Sse9I	AATT	3 cut(s)	662, 739, 912
SsiI	CCGC	4 cut(s)	604, 625, 715, 938
SspMI	CTAG	2 cut(s)	461, 1030
StyD4I	CCNGG	3 cut(s)	46, 52, 838
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	675
TaiI	ACGT	1 cut(s)	1020
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	662, 739, 912
TatI	WGTACW	2 cut(s)	369, 1023
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	2 cut(s)	783, 998
Tru9I	TTAA	2 cut(s)	783, 998
TscAI	CASTG	1 cut(s)	972
TseFI	GTSAC	2 cut(s)	109, 684
TseI	GCWGC	5 cut(s)	127, 145, 229, 608, 611
Tsp45I	GTSAC	2 cut(s)	109, 684
TspDTI	ATGAA	4 cut(s)	90, 329, 907, 943
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	972
Van91I	CCANNNNNTGG	1 cut(s)	570
VpaK11BI	GGWCC	4 cut(s)	573, 601, 935, 962
XagI	CCTNNNNNAGG	2 cut(s)	51, 554
XapI	RAATTY	1 cut(s)	912
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	461, 1030
ZrmI	AGTACT	1 cut(s)	1025
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.