FvH4_2g33720
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014672
Physical Location & Seq
Reverse (-)
25200006 .. 25203322
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33720.t2

Sequence Viewer

Length: 1218 bp
ATGGAAAGCGGGCTTCCCATGCTCAACTGTATGTTACAGCACACACTGAGAAGCTTATGTTCATCAGATTCTTCTTCTTCTTCCAATTCTTCAAAGTGGGTTTACGCCGTGTTCTGGAGAATCTTGCCCCGGAACTATCCTCCTCCCAAGTGGGATTATGGAGGTAGTGTTCTTGATCGCTCCAAAGGAAACAAAAGGAACTGGATGCTTGTTTGGGAGGATGGGTTCTGTGATTTCTATGAATGTGAGCAAGCAGGAAGTGGCTACTTAAAGGGGAGGTTTGGAGCTGATATCTTCTTCAAAATGTCCCATGAGGTTTATAATTTTGGTGAAGGTTTACTGGGGAAAGTAGCATTAGACAATAGTCACAAATGGGTGTTCAAAGATGCACCAAATCAAGTTGACAATCCCAACTTCATTTCCTCTTGGAATGTCTCCACTGAACCTCAACCAAAGGCATGGGAGTTTCAATTCAATTCAGGCATTCAGACTATTGGCATCATTTCTGTTAGAGAAGGCATAATTCAGCTTGGCTCCTTTGCTAAGATAGCTGAAGATCTCAATCTGGTGATCAGCATACAGAGGAAATTTAGCTACCTGCAAAGCATACCAGGTGTGTTCGCCATGCAAAGGCCTTACCTACCTATCCAGCATCCCTACATCCTCAAACCAAGTAATGCGCAGAATATGATTATGAATGAAAGCGCTACTACTACAACTGCTACTAGTATTGGTGCTGGGGTTAAGAGACTGTTCAACCACACACCCCGGGATGATCAAATGATCAAGTCCATTAACTTGGGCTGGAACACACCACAAAATGGAATAGGACTAGGACTCCGAGGATCATCATCCATTTCAGTACCTGATCCTAATTGGTCGACTCCATTTCCACCGCCTCTACTACCCTCCATTTCATGCAGCCTTGGAGCTCTTCTCTCAAAGCTGCCTTCAGTTTCACCTTCACCTTATATTCATGATGCCATTCATGAAGCTCCCAATACTACTACAGCTATGCTCATGAACAACAACAACAACAACAACAGTAACAGCAACCACAATGAGAATTGTTCCGAAAACAAGATACTAAAGGTTAGTGGTGGCATTATTAAGATAGAGTCGTCGTCGTCATCATTCTGTCATTTAGATTTAGCTCAAGAAGAAAAGAACAGTTTCAAAGACCCTAATAATCTTGGTTTGGAAAAAGGACAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

406

Amino Acids

44.9

Weight (kDa)

7.1

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 12 - 80 1.2e-07 bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N PF14215 99 - 197 4.8e-17 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33720 FvH4_2g33720
malus_domestica MD08G1093800.v1.1
prunus_persica Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1
pyrus_communis pycom15g07220
rosa_chinensis RchiOBHm_Chr6g0308831
rosa_laevigata RLG00000010614
rosa_multiflora Rmu_sc0004046.1_g000008
rosa_roxburghii Rroxscaffold_7G00159880
rosa_rugosa Rorug06G0368400.1
rosa_samantha Rh6AG479900 Rh6BG489400 Rh6CG494900 Rh6DG480200
rosa_wichuraiana Rw6G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
Acc16I TGCGCA 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 881
AciI CCGC 2 cut(s) 9, 896
AclWI GGATC 2 cut(s) 853, 863
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 2 cut(s) 573, 936
AfaI GTAC 1 cut(s) 864
AfeI AGCGCT 1 cut(s) 706
AfiI CCNNNNNNNGG 3 cut(s) 114, 630, 821
AgsI TTSAA 7 cut(s) 93, 301, 382, 470, 475, 757, 1177
AhlI ACTAGT 1 cut(s) 725
AjnI CCWGG 1 cut(s) 610
AloI GAACNNNNNNTCC 4 cut(s) 153, 185, 209, 241
Alw21I GWGCWC 1 cut(s) 934
Alw26I GTCTC 2 cut(s) 439, 742
AlwI GGATC 2 cut(s) 853, 863
AlwNI CAGNNNCTG 1 cut(s) 866
Ama87I CYCGRG 1 cut(s) 768
Aor51HI AGCGCT 1 cut(s) 706
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 2 cut(s) 921, 946
ApoI RAATTY 1 cut(s) 587
Asp700I GAANNNNTTC 1 cut(s) 1172
AspLEI GCGC 2 cut(s) 682, 707
AsuC2I CCSGG 3 cut(s) 130, 769, 770
AsuHPI GGTGA 4 cut(s) 341, 580, 951, 957
AvaI CYCGRG 1 cut(s) 768
BanII GRGCYC 1 cut(s) 934
Bbv12I GWGCWC 1 cut(s) 934
BbvI GCAGC 2 cut(s) 933, 933
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 612
BclI TGATCA 3 cut(s) 570, 775, 783
BcnI CCSGG 3 cut(s) 130, 769, 770
BcoDI GTCTC 2 cut(s) 439, 742
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 2 cut(s) 726, 833
BfmI CTRYAG 1 cut(s) 1008
BfoI RGCGCY 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 606
BglII AGATCT 1 cut(s) 556
BisI GCNGC 2 cut(s) 922, 947
BlsI GCNGC 2 cut(s) 923, 948
Bme1390I CCNGG 4 cut(s) 130, 612, 769, 770
BmeT110I CYCGRG 1 cut(s) 768
BmiI GGNNCC 1 cut(s) 535
BmrFI CCNGG 4 cut(s) 130, 612, 769, 770
BmrI ACTGGG 1 cut(s) 350
BmsI GCATC 5 cut(s) 195, 376, 507, 661, 970
BmuI ACTGGG 1 cut(s) 350
BoxI GACNNNNGTC 1 cut(s) 363
BplI GAGNNNNNCTC 2 cut(s) 921, 953
BpmI CTGGAG 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 1140
BpuMI CCSGG 3 cut(s) 130, 769, 770
BsaBI GATNNNNATC 2 cut(s) 561, 850
BsaJI CCNNGG 5 cut(s) 128, 767, 768, 841, 925
BsaXI ACNNNNNCTCC 6 cut(s) 153, 183, 209, 239, 822, 852
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 630, 821
Bse1I ACTGG 2 cut(s) 206, 345
Bse8I GATNNNNATC 2 cut(s) 561, 850
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 5 cut(s) 128, 767, 768, 841, 925
BseGI GGATG 6 cut(s) 210, 226, 652, 660, 778, 851
BseJI GATNNNNATC 2 cut(s) 561, 850
BseLI CCNNNNNNNGG 3 cut(s) 114, 630, 821
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 206, 345
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 933, 933
BseYI CCCAGC 1 cut(s) 737
BshFI GGCC 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 934
BsiHKCI CYCGRG 1 cut(s) 768
BsiSI CCGG 2 cut(s) 130, 769
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 114, 630, 821
BsmAI GTCTC 2 cut(s) 439, 742
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 634
BsoBI CYCGRG 1 cut(s) 768
Bsp1286I GDGCHC 1 cut(s) 934
Bsp143I GATC 7 cut(s) 175, 556, 570, 775, 783, 845, 868
BspACI CCGC 2 cut(s) 9, 896
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 39
BspHI TCATGA 3 cut(s) 976, 988, 1020
BspLI GGNNCC 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 2 cut(s) 853, 863
BspQI GCTCTTC 1 cut(s) 939
BsrI ACTGG 2 cut(s) 206, 345
BssECI CCNNGG 5 cut(s) 128, 767, 768, 841, 925
BssMI GATC 7 cut(s) 175, 556, 570, 775, 783, 845, 868
BssT1I CCWWGG 1 cut(s) 925
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 4 cut(s) 29, 753, 1046, 1172
Bst6I CTCTTC 1 cut(s) 939
BstC8I GCNNGC 2 cut(s) 11, 252
BstDEI CTNAG 2 cut(s) 47, 543
BstF5I GGATG 6 cut(s) 210, 226, 652, 660, 778, 851
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 2 cut(s) 682, 707
BstKTI GATC 7 cut(s) 178, 559, 573, 778, 786, 848, 871
BstMAI GTCTC 2 cut(s) 439, 742
BstMBI GATC 7 cut(s) 175, 556, 570, 775, 783, 845, 868
BstMWI GCNNNNNNNGC 2 cut(s) 19, 548
BstNI CCWGG 1 cut(s) 612
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 4 cut(s) 128, 610, 767, 768
BstSFI CTRYAG 1 cut(s) 1008
BstV1I GCAGC 2 cut(s) 933, 933
BstX2I RGATCY 1 cut(s) 556
BstXI CCANNNNNNTGG 2 cut(s) 459, 799
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 1 cut(s) 634
BtsCI GGATG 6 cut(s) 210, 226, 652, 660, 778, 851
BtsIMutI CAGTG 2 cut(s) 44, 438
BveI ACCTGC 1 cut(s) 606
Cac8I GCNNGC 2 cut(s) 11, 252
CaiI CAGNNNCTG 1 cut(s) 866
CciI TCATGA 3 cut(s) 976, 988, 1020
CfoI GCGC 2 cut(s) 682, 707
Cfr9I CCCGGG 1 cut(s) 768
CsiI ACCWGGT 1 cut(s) 610
Csp6I GTAC 1 cut(s) 863
CviAII CATG 8 cut(s) 19, 311, 459, 625, 918, 977, 989, 1021
CviQI GTAC 1 cut(s) 863
DdeI CTNAG 2 cut(s) 47, 543
DpnI GATC 7 cut(s) 177, 558, 572, 777, 785, 847, 870
DpnII GATC 7 cut(s) 175, 556, 570, 775, 783, 845, 868
Eam1104I CTCTTC 1 cut(s) 939
EarI CTCTTC 1 cut(s) 939
Ecl136II GAGCTC 1 cut(s) 932
Eco130I CCWWGG 1 cut(s) 925
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 934
Eco32I GATATC 1 cut(s) 292
Eco47III AGCGCT 1 cut(s) 706
Eco53kI GAGCTC 1 cut(s) 932
Eco57I CTGAAG 2 cut(s) 573, 936
Eco88I CYCGRG 1 cut(s) 768
EcoICRI GAGCTC 1 cut(s) 932
EcoRII CCWGG 1 cut(s) 610
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 925
EcoT38I GRGCYC 1 cut(s) 934
ErhI CCWWGG 1 cut(s) 925
FaeI CATG 8 cut(s) 22, 314, 462, 628, 921, 980, 992, 1024
FaqI GGGAC 1 cut(s) 292
FatI CATG 8 cut(s) 18, 310, 458, 624, 917, 976, 988, 1020
FauI CCCGC 1 cut(s) 2
FbaI TGATCA 3 cut(s) 570, 775, 783
FblI GTMKAC 1 cut(s) 881
Fnu4HI GCNGC 2 cut(s) 922, 947
FokI GGATG 6 cut(s) 217, 233, 639, 647, 785, 838
FriOI GRGCYC 1 cut(s) 934
Fsp4HI GCNGC 2 cut(s) 922, 947
FspBI CTAG 2 cut(s) 726, 833
FspI TGCGCA 1 cut(s) 681
GlaI GCGC 2 cut(s) 681, 706
GluI GCNGC 2 cut(s) 922, 947
GsaI CCCAGC 1 cut(s) 741
GsuI CTGGAG 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 708
HaeIII GGCC 1 cut(s) 634
HapII CCGG 2 cut(s) 130, 769
HhaI GCGC 2 cut(s) 682, 707
Hin1II CATG 8 cut(s) 22, 314, 462, 628, 921, 980, 992, 1024
Hin6I GCGC 2 cut(s) 680, 705
HinP1I GCGC 2 cut(s) 680, 705
HincII GTYRAC 2 cut(s) 403, 882
HindII GTYRAC 2 cut(s) 403, 882
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 5 cut(s) 68, 120, 837, 883, 1118
HpaII CCGG 2 cut(s) 130, 769
HphI GGTGA 4 cut(s) 341, 580, 951, 957
Hpy166II GTNNAC 4 cut(s) 103, 338, 403, 882
Hpy188I TCNGA 4 cut(s) 67, 489, 842, 1075
Hpy188III TCNNGA 6 cut(s) 115, 173, 977, 989, 1021, 1157
Hpy8I GTNNAC 4 cut(s) 103, 338, 403, 882
Hpy99I CGWCG 2 cut(s) 1126, 1129
HpyAV CCTTC 4 cut(s) 326, 509, 960, 972
HpyCH4III ACNGT 4 cut(s) 29, 753, 1046, 1172
HpyCH4V TGCA 4 cut(s) 389, 601, 628, 921
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 548
HpyF3I CTNAG 2 cut(s) 47, 543
Hsp92II CATG 8 cut(s) 22, 314, 462, 628, 921, 980, 992, 1024
HspAI GCGC 2 cut(s) 680, 705
Ksp22I TGATCA 3 cut(s) 570, 775, 783
Kzo9I GATC 7 cut(s) 175, 556, 570, 775, 783, 845, 868
LguI GCTCTTC 1 cut(s) 939
LmnI GCTCC 5 cut(s) 185, 284, 539, 929, 1000
Lsp1109I GCAGC 2 cut(s) 933, 933
LweI GCATC 5 cut(s) 195, 376, 507, 661, 970
MabI ACCWGGT 1 cut(s) 610
MaeI CTAG 2 cut(s) 726, 833
MaeIII GTNAC 3 cut(s) 33, 365, 1046
MalI GATC 7 cut(s) 177, 558, 572, 777, 785, 847, 870
MboI GATC 7 cut(s) 175, 556, 570, 775, 783, 845, 868
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 934
MluCI AATT 8 cut(s) 85, 322, 470, 475, 522, 587, 874, 1066
MlyI GAGTC 3 cut(s) 831, 877, 1127
MroXI GAANNNNTTC 1 cut(s) 1172
MseI TTAA 5 cut(s) 269, 744, 795, 1110, 1216
MspI CCGG 2 cut(s) 130, 769
MspR9I CCNGG 4 cut(s) 130, 612, 769, 770
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 19, 548
NciI CCSGG 3 cut(s) 130, 769, 770
NdeII GATC 7 cut(s) 175, 556, 570, 775, 783, 845, 868
NlaIII CATG 8 cut(s) 22, 314, 462, 628, 921, 980, 992, 1024
NlaIV GGNNCC 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 365
NsbI TGCGCA 1 cut(s) 681
PagI TCATGA 3 cut(s) 976, 988, 1020
PceI AGGCCT 1 cut(s) 634
PciSI GCTCTTC 1 cut(s) 939
PctI GAATGC 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 1172
PfeI GAWTC 2 cut(s) 68, 120
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 2 cut(s) 923, 948
PleI GAGTC 3 cut(s) 831, 877, 1126
PpsI GAGTC 3 cut(s) 831, 877, 1126
PshAI GACNNNNGTC 1 cut(s) 363
PsiI TTATAA 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 934
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 737
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 1 cut(s) 535
PstNI CAGNNNCTG 1 cut(s) 866
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 1 cut(s) 864
RsaNI GTAC 1 cut(s) 863
SacI GAGCTC 1 cut(s) 934
SalI GTCGAC 1 cut(s) 880
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 5 cut(s) 269, 744, 795, 1110, 1216
SatI GCNGC 2 cut(s) 922, 947
Sau3AI GATC 7 cut(s) 175, 556, 570, 775, 783, 845, 868
SchI GAGTC 3 cut(s) 831, 877, 1127
ScrFI CCNGG 4 cut(s) 130, 612, 769, 770
SduI GDGCHC 1 cut(s) 934
SexAI ACCWGGT 1 cut(s) 610
SfaNI GCATC 5 cut(s) 195, 376, 507, 661, 970
SfcI CTRYAG 1 cut(s) 1008
SmaI CCCGGG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 1155
SmoI CTYRAG 1 cut(s) 1155
SpeI ACTAGT 1 cut(s) 725
Sse9I AATT 8 cut(s) 85, 322, 470, 475, 522, 587, 874, 1066
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 2 cut(s) 9, 896
SspMI CTAG 2 cut(s) 726, 833
SstI GAGCTC 1 cut(s) 934
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 4 cut(s) 128, 610, 767, 768
StyI CCWWGG 1 cut(s) 925
TaaI ACNGT 4 cut(s) 29, 753, 1046, 1172
TaqI TCGA 1 cut(s) 881
TasI AATT 8 cut(s) 85, 322, 470, 475, 522, 587, 874, 1066
TfiI GAWTC 2 cut(s) 68, 120
Tru1I TTAA 5 cut(s) 269, 744, 795, 1110, 1216
Tru9I TTAA 5 cut(s) 269, 744, 795, 1110, 1216
TscAI CASTG 2 cut(s) 51, 445
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 2 cut(s) 921, 946
Tsp45I GTSAC 1 cut(s) 365
TspMI CCCGGG 1 cut(s) 768
TspRI CASTG 2 cut(s) 51, 445
Van91I CCANNNNNTGG 1 cut(s) 821
XapI RAATTY 1 cut(s) 587
XmaI CCCGGG 1 cut(s) 768
XmiI GTMKAC 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 1172
XspI CTAG 2 cut(s) 726, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.