Rmu_sc0004046.1_g000008
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004046.1
OG0014672
Physical Location & Seq
Forward (+)
45609 .. 48976
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004046.1_g000008.1.cds

Sequence Viewer

Length: 1269 bp
atggaacccgaagcaactgcagttggtggggacgaattggtggtggcttccagccagtcggaggacggtgatgatagtgagccgcgcacactcagaagcttgtgttcatgttcatcagattcctcttccaattcttccaagtgggtttacgccgtcttctggagaatcttgcctcggaactatcctcctccaaagtgggattatggaagtagtgtccttgatcgctccaaaggaaacaaaaggaactggattcttgtttgggaggatgggttctgtgatttctatgaatgtgagcaagcaggaagtggctacttaaaggggaggtttggagctgatattttcttcaaaatgtcccatgaggtttataattttggagaaggtttcttggggaaagtagcagtagacaacagtcataaatgggtgttcagagatgcaccaaatcatgtggacaaccccaacttcatttcttcttggaatgtatccactgaacctcaaccaaaggcatggacgtttcaattcaattcaggcattcagactattgccatcatttctgttagagaaggcataattcagcttggctcgtttgataagatagcggaagatctcaatctggtgatcagcatacagaggaagttcagctacctgcagagcataccaggtgtttttgccatgcaaaggccttacctacctatccagcatccctacatcctcaaaccaagtaacgcccagaatatgattatgaatggaagcactagtacgtacactgctactactactagtattggtgctggagttaagagattgttcaacctcacaccgccggacgatcagatgatcaagtccatcaacttgggatggaacacaccacaaaatggaataggactaggactcggaggatcatcatccgtttcagtacctgatcctaattggtcgattccatttccaccgcctcttctaccctccatttcatgcagccttggagctcttctatcaaagctaccttcagtttcaccttcaccttatattaataatgatgccattcatgaagctcccaacactattactacaaccactactacagctatgctcatgaacaacagcaacaaccgcaacaacaattgtgccgaaaacaagatactgaaggttagtggtggcattattaagatagagtcatcatcaccatcatcctgtcatctagatgtagctcaacaagaaaagcacagttccatagaccctaataatcttggtttggaaaaaggacagacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

422

Amino Acids

46.24

Weight (kDa)

5.69

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33720 FvH4_2g33720
malus_domestica MD08G1093800.v1.1
prunus_persica Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1
pyrus_communis pycom15g07220
rosa_chinensis RchiOBHm_Chr6g0308831
rosa_laevigata RLG00000010614
rosa_multiflora Rmu_sc0004046.1_g000008
rosa_roxburghii Rroxscaffold_7G00159880
rosa_rugosa Rorug06G0368400.1
rosa_samantha Rh6AG479900 Rh6BG489400 Rh6CG494900 Rh6DG480200
rosa_wichuraiana Rw6G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc36I ACCTGC 1 cut(s) 651
AccB7I CCANNNNNTGG 1 cut(s) 872
AccI GTMKAC 1 cut(s) 402
AccII CGCG 1 cut(s) 85
AciI CCGC 5 cut(s) 83, 596, 818, 947, 1108
AclWI GGATC 2 cut(s) 904, 914
AcuI CTGAAG 2 cut(s) 987, 1160
AfaI GTAC 3 cut(s) 757, 761, 915
AfiI CCNNNNNNNGG 4 cut(s) 61, 159, 675, 872
AgsI TTSAA 4 cut(s) 346, 515, 520, 808
AhlI ACTAGT 2 cut(s) 752, 776
AjnI CCWGG 1 cut(s) 655
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 9 cut(s) 99, 332, 574, 639, 983, 997, 1049, 1082, 1205
AluI AGCT 9 cut(s) 99, 332, 574, 639, 983, 997, 1049, 1082, 1205
Alw21I GWGCWC 1 cut(s) 985
AlwI GGATC 2 cut(s) 904, 914
AlwNI CAGNNNCTG 1 cut(s) 917
AoxI GGCC 1 cut(s) 677
ApeKI GCWGC 1 cut(s) 972
AseI ATTAAT 1 cut(s) 1026
AspLEI GCGC 1 cut(s) 87
AsuHPI GGTGA 5 cut(s) 80, 625, 1002, 1008, 1170
BanII GRGCYC 1 cut(s) 985
BarI GAAGNNNNNNTAC 4 cut(s) 623, 655, 739, 771
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 1 cut(s) 984
BccI CCATC 5 cut(s) 260, 551, 849, 851, 1189
BceAI ACGGC 1 cut(s) 137
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 657
BciVI GTATCC 1 cut(s) 490
BclI TGATCA 2 cut(s) 615, 834
BcuI ACTAGT 2 cut(s) 752, 776
BfaI CTAG 4 cut(s) 753, 777, 884, 1196
BfmI CTRYAG 3 cut(s) 18, 644, 1077
BfuAI ACCTGC 1 cut(s) 651
BfuI GTATCC 1 cut(s) 490
BglII AGATCT 1 cut(s) 601
BisI GCNGC 2 cut(s) 83, 973
BlsI GCNGC 2 cut(s) 84, 974
Bme1390I CCNGG 1 cut(s) 657
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 657
BmsI GCATC 3 cut(s) 421, 706, 1024
BoxI GACNNNNGTC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 2 cut(s) 181, 810
BsaAI YACGTR 1 cut(s) 759
BsaBI GATNNNNATC 2 cut(s) 606, 901
BsaJI CCNNGG 2 cut(s) 173, 976
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 159, 675, 872
Bse1I ACTGG 2 cut(s) 55, 251
Bse8I GATNNNNATC 2 cut(s) 606, 901
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 2 cut(s) 173, 976
BseGI GGATG 6 cut(s) 271, 697, 705, 860, 902, 1184
BseJI GATNNNNATC 2 cut(s) 606, 901
BseLI CCNNNNNNNGG 4 cut(s) 61, 159, 675, 872
BseMII CTCAG 1 cut(s) 106
BseNI ACTGG 2 cut(s) 55, 251
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 984
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 679
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 1 cut(s) 821
BslFI GGGAC 2 cut(s) 44, 337
BslI CCNNNNNNNGG 4 cut(s) 61, 159, 675, 872
BsmFI GGGAC 2 cut(s) 44, 337
BsmI GAATGC 1 cut(s) 528
BsnI GGCC 1 cut(s) 679
Bsp1286I GDGCHC 1 cut(s) 985
Bsp143I GATC 7 cut(s) 220, 601, 615, 826, 834, 896, 919
BspACI CCGC 5 cut(s) 83, 596, 818, 947, 1108
BspANI GGCC 1 cut(s) 679
BspCNI CTCAG 1 cut(s) 105
BspFNI CGCG 1 cut(s) 85
BspHI TCATGA 2 cut(s) 1042, 1089
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 2 cut(s) 22, 648
BspMI ACCTGC 1 cut(s) 651
BspPI GGATC 2 cut(s) 904, 914
BspQI GCTCTTC 1 cut(s) 990
BsrI ACTGG 2 cut(s) 55, 251
BssECI CCNNGG 2 cut(s) 173, 976
BssMI GATC 7 cut(s) 220, 601, 615, 826, 834, 896, 919
BssT1I CCWWGG 1 cut(s) 976
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 3 cut(s) 68, 410, 1223
Bst6I CTCTTC 3 cut(s) 130, 957, 990
BstBAI YACGTR 1 cut(s) 759
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 6 cut(s) 271, 697, 705, 860, 902, 1184
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 7 cut(s) 223, 604, 618, 829, 837, 899, 922
BstMBI GATC 7 cut(s) 220, 601, 615, 826, 834, 896, 919
BstMWI GCNNNNNNNGC 1 cut(s) 1107
BstNI CCWGG 1 cut(s) 657
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 655
BstSFI CTRYAG 3 cut(s) 18, 644, 1077
BstSNI TACGTA 1 cut(s) 759
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 984
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 601
BstXI CCANNNNNNTGG 2 cut(s) 504, 850
BstYI RGATCY 1 cut(s) 601
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 1 cut(s) 679
BtsCI GGATG 6 cut(s) 271, 697, 705, 860, 902, 1184
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 2 cut(s) 483, 762
BveI ACCTGC 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 297
CaiI CAGNNNCTG 1 cut(s) 917
CciI TCATGA 2 cut(s) 1042, 1089
CfoI GCGC 1 cut(s) 87
CsiI ACCWGGT 1 cut(s) 655
Csp6I GTAC 3 cut(s) 756, 760, 914
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviAII CATG 8 cut(s) 108, 356, 443, 504, 670, 969, 1043, 1090
CviQI GTAC 3 cut(s) 756, 760, 914
DdeI CTNAG 1 cut(s) 92
DpnI GATC 7 cut(s) 222, 603, 617, 828, 836, 898, 921
DpnII GATC 7 cut(s) 220, 601, 615, 826, 834, 896, 919
Eam1104I CTCTTC 3 cut(s) 130, 957, 990
EarI CTCTTC 3 cut(s) 130, 957, 990
Ecl136II GAGCTC 1 cut(s) 983
Eco105I TACGTA 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 976
Eco147I AGGCCT 1 cut(s) 679
Eco24I GRGCYC 1 cut(s) 985
Eco53kI GAGCTC 1 cut(s) 983
Eco57I CTGAAG 2 cut(s) 987, 1160
EcoICRI GAGCTC 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 976
EcoT38I GRGCYC 1 cut(s) 985
ErhI CCWWGG 1 cut(s) 976
FaeI CATG 8 cut(s) 111, 359, 446, 507, 673, 972, 1046, 1093
FaqI GGGAC 2 cut(s) 44, 337
FatI CATG 8 cut(s) 107, 355, 442, 503, 669, 968, 1042, 1089
FbaI TGATCA 2 cut(s) 615, 834
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 2 cut(s) 83, 973
FokI GGATG 6 cut(s) 278, 684, 692, 867, 889, 1171
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 2 cut(s) 83, 973
FspBI CTAG 4 cut(s) 753, 777, 884, 1196
GlaI GCGC 1 cut(s) 86
GluI GCNGC 2 cut(s) 83, 973
GsuI CTGGAG 2 cut(s) 181, 810
HaeIII GGCC 1 cut(s) 679
HapII CCGG 1 cut(s) 821
HhaI GCGC 1 cut(s) 87
Hin1II CATG 8 cut(s) 111, 359, 446, 507, 673, 972, 1046, 1093
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 6 cut(s) 119, 165, 250, 888, 934, 1169
HpaII CCGG 1 cut(s) 821
HphI GGTGA 5 cut(s) 80, 625, 1002, 1008, 1170
Hpy166II GTNNAC 4 cut(s) 148, 403, 448, 762
Hpy188I TCNGA 8 cut(s) 61, 95, 118, 177, 428, 534, 831, 893
Hpy188III TCNNGA 4 cut(s) 160, 1043, 1090, 1196
Hpy8I GTNNAC 4 cut(s) 148, 403, 448, 762
HpyAV CCTTC 5 cut(s) 371, 554, 1011, 1023, 1135
HpyCH4III ACNGT 3 cut(s) 68, 410, 1223
HpyCH4IV ACGT 2 cut(s) 509, 758
HpyCH4V TGCA 5 cut(s) 20, 434, 646, 673, 972
HpyF10VI GCNNNNNNNGC 1 cut(s) 1107
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 2 cut(s) 509, 758
Hsp92II CATG 8 cut(s) 111, 359, 446, 507, 673, 972, 1046, 1093
HspAI GCGC 1 cut(s) 85
Ksp22I TGATCA 2 cut(s) 615, 834
Kzo9I GATC 7 cut(s) 220, 601, 615, 826, 834, 896, 919
LguI GCTCTTC 1 cut(s) 990
LmnI GCTCC 4 cut(s) 230, 329, 980, 1054
Lsp1109I GCAGC 1 cut(s) 984
LweI GCATC 3 cut(s) 421, 706, 1024
MabI ACCWGGT 1 cut(s) 655
MaeI CTAG 4 cut(s) 753, 777, 884, 1196
MaeII ACGT 2 cut(s) 509, 758
MaeIII GTNAC 1 cut(s) 719
MalI GATC 7 cut(s) 222, 603, 617, 828, 836, 898, 921
MboI GATC 7 cut(s) 220, 601, 615, 826, 834, 896, 919
MboII GAAGA 8 cut(s) 117, 126, 148, 334, 459, 611, 944, 977
MfeI CAATTG 1 cut(s) 1117
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 8 cut(s) 35, 130, 367, 515, 520, 567, 925, 1117
MlyI GAGTC 2 cut(s) 882, 1178
MmeI TCCRAC 1 cut(s) 39
MseI TTAA 5 cut(s) 314, 795, 1026, 1161, 1267
MslI CAYNNNNRTG 1 cut(s) 1197
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 1 cut(s) 657
MunI CAATTG 1 cut(s) 1117
Mva1269I GAATGC 1 cut(s) 528
MvaI CCWGG 1 cut(s) 657
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 1107
NdeII GATC 7 cut(s) 220, 601, 615, 826, 834, 896, 919
NlaIII CATG 8 cut(s) 111, 359, 446, 507, 673, 972, 1046, 1093
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 2 cut(s) 1042, 1089
PceI AGGCCT 1 cut(s) 679
PciSI GCTCTTC 1 cut(s) 990
PctI GAATGC 1 cut(s) 528
PfeI GAWTC 4 cut(s) 119, 165, 250, 934
PflMI CCANNNNNTGG 1 cut(s) 872
PkrI GCNGC 2 cut(s) 84, 974
PleI GAGTC 2 cut(s) 882, 1177
PpsI GAGTC 2 cut(s) 882, 1177
Ppu21I YACGTR 1 cut(s) 759
PshAI GACNNNNGTC 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 1026
PsiI TTATAA 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 985
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 6
PstI CTGCAG 2 cut(s) 22, 648
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 3 cut(s) 757, 761, 915
RsaNI GTAC 3 cut(s) 756, 760, 914
RseI CAYNNNNRTG 1 cut(s) 1197
SacI GAGCTC 1 cut(s) 985
SapI GCTCTTC 1 cut(s) 990
SaqAI TTAA 5 cut(s) 314, 795, 1026, 1161, 1267
SatI GCNGC 2 cut(s) 83, 973
Sau3AI GATC 7 cut(s) 220, 601, 615, 826, 834, 896, 919
SchI GAGTC 2 cut(s) 882, 1178
ScrFI CCNGG 1 cut(s) 657
SduI GDGCHC 1 cut(s) 985
SexAI ACCWGGT 1 cut(s) 655
SfaNI GCATC 3 cut(s) 421, 706, 1024
SfcI CTRYAG 3 cut(s) 18, 644, 1077
SmiMI CAYNNNNRTG 1 cut(s) 1197
SnaBI TACGTA 1 cut(s) 759
SpeI ACTAGT 2 cut(s) 752, 776
Sse9I AATT 8 cut(s) 35, 130, 367, 515, 520, 567, 925, 1117
SseBI AGGCCT 1 cut(s) 679
SsiI CCGC 5 cut(s) 83, 596, 818, 947, 1108
SspMI CTAG 4 cut(s) 753, 777, 884, 1196
SstI GAGCTC 1 cut(s) 985
StuI AGGCCT 1 cut(s) 679
StyD4I CCNGG 1 cut(s) 655
StyI CCWWGG 1 cut(s) 976
TaaI ACNGT 3 cut(s) 68, 410, 1223
TaiI ACGT 2 cut(s) 512, 761
TaqI TCGA 1 cut(s) 932
TasI AATT 8 cut(s) 35, 130, 367, 515, 520, 567, 925, 1117
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 4 cut(s) 119, 165, 250, 934
Tru1I TTAA 5 cut(s) 314, 795, 1026, 1161, 1267
Tru9I TTAA 5 cut(s) 314, 795, 1026, 1161, 1267
TscAI CASTG 2 cut(s) 490, 769
TseI GCWGC 1 cut(s) 972
TspDTI ATGAA 9 cut(s) 96, 102, 300, 451, 755, 957, 1031, 1059, 1106
TspGWI ACGGA 1 cut(s) 895
TspRI CASTG 2 cut(s) 490, 769
Van91I CCANNNNNTGG 1 cut(s) 872
VspI ATTAAT 1 cut(s) 1026
XbaI TCTAGA 1 cut(s) 1195
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 4 cut(s) 753, 777, 884, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.