Prupe.1G430900_v2.0.a1
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014672
Physical Location & Seq
Forward (+)
36924030 .. 36926124
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G430900.3

Sequence Viewer

Length: 1182 bp
ATGTCTGCGCGTGGACATTGGTTGTTTGTTCCCATCTCTAGTTTGCTCTTTCCCTTTTTAATTGTGATGGAAACAAGACACACGCTGAGGAGCCTCTGTTCAGGTTCTGATTCTTCTAATTCTTCCAAGTGGGTTTATGCTGTCTTCTGGAGGATCTTGCCTCGGAACTACCCTCCTCCAAAGTGGGATTATGGAGGAAGTGCTCTTGATCGCTCCAAAGGAAACAAAAGGAACTGGATTCTTGTTTGGGAAGATGGGTTCTGTAATTTCTATGAATGCGAGCAAGCAGAAAGTGGTTACATAAGGGGGAGGTTTGGAGCTGATATCTTCTTCAAAATGTCCCATGAGGTCTATAATTATGGAGAAGGATTAGTGGGGAAAGTAGCAGCAGATAATAGTCATAAATGGGTGTTCAGAGATACACCAAATGAGGGTGACCCCAGCTTCATTTCCTCTTGGAATGTAACCACTGAACCGCAACCAAGGGCATGGGAGTTTCAATTCAAATCAGGCATACAGACCATTGCACTCATTTCTGTTAGAGAAGGCATAATTCAACTTGGCTCATTTGACAAGATATTGGAAGATCTCAATCTGGTAATCACCATACAGAGGAAAATCAGCCACCTCCAGAGCATACCAGGTGTTTTTGCCATGCAAAGACCATACCTACCGATCCAACATCCCTACATCCTCAAACCAAATAACCAGATGATTGGAGGTCAAGAAACAGCTTTATCAGTCTATGGCAAACGCCAATTGACCGGGGTTAAAAGGTTGTTCAATGAAATGGCTGATGAATCCCAAATAAATCTTGGCTGGAATAATCCACAAAATGGGCTAGCAGGATCACCCCATTGGCCAATTCCACCTCTTCCACCCTCCATTTCATGCAGCCTTGGAGCTCTTCTCTCAAAGCTACCTTCAGTCAATTTCCCATCCTATAATGCTGCTGAAGCTCCTGACACAGCTATGCTTATGAACAACAACATCAGCAACAACAACGGCAGTTGTGCAGATCAAACACTGAAGGCTAGTGGTGGCATTATGAAAATAGAGTCATCCTGTCATTTAGATGTAGCTCAAGAAGAAAAGCACAGCTCCATGAACCCTAATCTGGGTTTGGAAAATGGAGGAGGGGTAGACTTAGGATTTGGACCTGTAAGAAAGGGAAAGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

394

Amino Acids

43.71

Weight (kDa)

7.65

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33720 FvH4_2g33720
malus_domestica MD08G1093800.v1.1
prunus_persica Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1
pyrus_communis pycom15g07220
rosa_chinensis RchiOBHm_Chr6g0308831
rosa_laevigata RLG00000010614
rosa_multiflora Rmu_sc0004046.1_g000008
rosa_roxburghii Rroxscaffold_7G00159880
rosa_rugosa Rorug06G0368400.1
rosa_samantha Rh6AG479900 Rh6BG489400 Rh6CG494900 Rh6DG480200
rosa_wichuraiana Rw6G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 836
AccI GTMKAC 1 cut(s) 1143
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 476
AclWI GGATC 3 cut(s) 161, 670, 856
AcoI YGGCCR 1 cut(s) 860
AcuI CTGAAG 3 cut(s) 909, 975, 1049
AfiI CCNNNNNNNGG 5 cut(s) 431, 612, 836, 1117, 1118
AgsI TTSAA 5 cut(s) 334, 500, 505, 557, 784
AjnI CCWGG 1 cut(s) 640
AloI GAACNNNNNNTCC 4 cut(s) 82, 114, 242, 274
AluBI AGCT 9 cut(s) 320, 444, 734, 905, 919, 959, 971, 1082, 1101
AluI AGCT 9 cut(s) 320, 444, 734, 905, 919, 959, 971, 1082, 1101
Alw21I GWGCWC 2 cut(s) 205, 907
AlwI GGATC 3 cut(s) 161, 670, 856
AlwNI CAGNNNCTG 1 cut(s) 107
AoxI GGCC 1 cut(s) 860
ApeKI GCWGC 3 cut(s) 386, 894, 950
ArsI GACNNNNNNTTYG 2 cut(s) 1136, 1168
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 1157
AsuC2I CCSGG 1 cut(s) 766
AsuHPI GGTGA 3 cut(s) 446, 595, 843
AsuNHI GCTAGC 1 cut(s) 841
AvaII GGWCC 1 cut(s) 1157
BalI TGGCCA 1 cut(s) 862
BanII GRGCYC 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 2 cut(s) 205, 907
BbvCI CCTCAGC 1 cut(s) 86
BbvI GCAGC 3 cut(s) 398, 906, 937
BccI CCATC 4 cut(s) 41, 61, 248, 946
BceAI ACGGC 1 cut(s) 1021
BciT130I CCWGG 1 cut(s) 642
BcnI CCSGG 1 cut(s) 766
BfaI CTAG 3 cut(s) 39, 842, 1035
BglII AGATCT 1 cut(s) 586
BisI GCNGC 3 cut(s) 387, 895, 951
BlsI GCNGC 3 cut(s) 388, 896, 952
Bme1390I CCNGG 2 cut(s) 642, 766
Bme18I GGWCC 1 cut(s) 1157
BmgT120I GGNCC 1 cut(s) 1157
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 642, 766
BmtI GCTAGC 1 cut(s) 845
BpiI GAAGAC 1 cut(s) 136
BplI GAGNNNNNCTC 2 cut(s) 894, 926
BpmI CTGGAG 2 cut(s) 169, 614
Bpu10I CCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 1068
BpuMI CCSGG 1 cut(s) 766
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 4 cut(s) 161, 482, 765, 898
BsaXI ACNNNNNCTCC 4 cut(s) 82, 112, 1125, 1155
Bsc4I CCNNNNNNNGG 5 cut(s) 431, 612, 836, 1117, 1118
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 4 cut(s) 161, 482, 765, 898
BseGI GGATG 4 cut(s) 682, 690, 938, 1061
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 5 cut(s) 431, 612, 836, 1117, 1118
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 3 cut(s) 103, 165, 1149
BseXI GCAGC 3 cut(s) 398, 906, 937
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 1035
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 1 cut(s) 862
BsiHKAI GWGCWC 2 cut(s) 205, 907
BsiSI CCGG 1 cut(s) 765
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 5 cut(s) 431, 612, 836, 1117, 1118
BsmFI GGGAC 1 cut(s) 325
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 1 cut(s) 862
Bsp1286I GDGCHC 2 cut(s) 205, 907
Bsp143I GATC 6 cut(s) 153, 208, 586, 675, 848, 1018
BspACI CCGC 1 cut(s) 476
BspANI GGCC 1 cut(s) 862
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 845
BspPI GGATC 3 cut(s) 161, 670, 856
BspQI GCTCTTC 1 cut(s) 912
BsrDI GCAATG 1 cut(s) 522
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 4 cut(s) 161, 482, 765, 898
BssMI GATC 6 cut(s) 153, 208, 586, 675, 848, 1018
BssT1I CCWWGG 2 cut(s) 482, 898
Bst2UI CCWGG 1 cut(s) 642
Bst6I CTCTTC 2 cut(s) 879, 912
BstC8I GCNNGC 3 cut(s) 281, 285, 843
BstDEI CTNAG 2 cut(s) 86, 1147
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 4 cut(s) 682, 690, 938, 1061
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 6 cut(s) 156, 211, 589, 678, 851, 1021
BstMBI GATC 6 cut(s) 153, 208, 586, 675, 848, 1018
BstMWI GCNNNNNNNGC 1 cut(s) 956
BstNI CCWGG 1 cut(s) 642
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 640, 764
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 3 cut(s) 398, 906, 937
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 153, 586
BstXI CCANNNNNNTGG 2 cut(s) 489, 716
BstYI RGATCY 2 cut(s) 153, 586
BsuRI GGCC 1 cut(s) 862
BtsCI GGATG 4 cut(s) 682, 690, 938, 1061
BtsIMutI CAGTG 2 cut(s) 468, 1025
Cac8I GCNNGC 3 cut(s) 281, 285, 843
CaiI CAGNNNCTG 1 cut(s) 107
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 1157
CsiI ACCWGGT 1 cut(s) 640
CviAII CATG 5 cut(s) 344, 489, 655, 891, 1105
DdeI CTNAG 2 cut(s) 86, 1147
DpnI GATC 6 cut(s) 155, 210, 588, 677, 850, 1020
DpnII GATC 6 cut(s) 153, 208, 586, 675, 848, 1018
EaeI YGGCCR 1 cut(s) 860
Eam1104I CTCTTC 2 cut(s) 879, 912
EarI CTCTTC 2 cut(s) 879, 912
Ecl136II GAGCTC 1 cut(s) 905
Eco130I CCWWGG 2 cut(s) 482, 898
Eco24I GRGCYC 1 cut(s) 907
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 1157
Eco53kI GAGCTC 1 cut(s) 905
Eco57I CTGAAG 3 cut(s) 909, 975, 1049
Eco91I GGTNACC 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 905
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 640
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 2 cut(s) 482, 898
EcoT38I GRGCYC 1 cut(s) 907
ErhI CCWWGG 2 cut(s) 482, 898
FaeI CATG 5 cut(s) 347, 492, 658, 894, 1108
FaqI GGGAC 1 cut(s) 325
FatI CATG 5 cut(s) 343, 488, 654, 890, 1104
FblI GTMKAC 1 cut(s) 1143
Fnu4HI GCNGC 3 cut(s) 387, 895, 951
FokI GGATG 4 cut(s) 669, 677, 925, 1048
FriOI GRGCYC 1 cut(s) 907
Fsp4HI GCNGC 3 cut(s) 387, 895, 951
FspBI CTAG 3 cut(s) 39, 842, 1035
GlaI GCGC 1 cut(s) 9
GluI GCNGC 3 cut(s) 387, 895, 951
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 2 cut(s) 169, 614
HaeIII GGCC 1 cut(s) 862
HapII CCGG 1 cut(s) 765
HhaI GCGC 1 cut(s) 10
Hin1II CATG 5 cut(s) 347, 492, 658, 894, 1108
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 4 cut(s) 110, 238, 800, 1058
HpaII CCGG 1 cut(s) 765
HphI GGTGA 3 cut(s) 446, 595, 843
Hpy166II GTNNAC 2 cut(s) 14, 1144
Hpy188I TCNGA 3 cut(s) 109, 165, 416
Hpy188III TCNNGA 6 cut(s) 148, 206, 631, 725, 962, 1085
Hpy8I GTNNAC 2 cut(s) 14, 1144
HpyAV CCTTC 4 cut(s) 359, 539, 933, 1024
HpyCH4IV ACGT 1 cut(s) 1178
HpyCH4V TGCA 4 cut(s) 527, 658, 894, 1016
HpyF10VI GCNNNNNNNGC 1 cut(s) 956
HpyF3I CTNAG 2 cut(s) 86, 1147
HpySE526I ACGT 1 cut(s) 1178
Hsp92II CATG 5 cut(s) 347, 492, 658, 894, 1108
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 6 cut(s) 153, 208, 586, 675, 848, 1018
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 6 cut(s) 90, 218, 317, 902, 964, 1106
Lsp1109I GCAGC 3 cut(s) 398, 906, 937
MabI ACCWGGT 1 cut(s) 640
MaeI CTAG 3 cut(s) 39, 842, 1035
MaeII ACGT 1 cut(s) 1178
MaeIII GTNAC 3 cut(s) 296, 434, 463
MalI GATC 6 cut(s) 155, 210, 588, 677, 850, 1020
MboI GATC 6 cut(s) 153, 208, 586, 675, 848, 1018
MfeI CAATTG 1 cut(s) 758
MflI RGATCY 2 cut(s) 153, 586
MhlI GDGCHC 2 cut(s) 205, 907
MlsI TGGCCA 1 cut(s) 862
MluCI AATT 9 cut(s) 60, 118, 265, 355, 500, 552, 758, 864, 931
MluNI TGGCCA 1 cut(s) 862
MlyI GAGTC 1 cut(s) 1067
MmeI TCCRAC 1 cut(s) 703
Mox20I TGGCCA 1 cut(s) 862
MscI TGGCCA 1 cut(s) 862
MseI TTAA 2 cut(s) 59, 771
MslI CAYNNNNRTG 2 cut(s) 971, 1074
Msp20I TGGCCA 1 cut(s) 862
MspI CCGG 1 cut(s) 765
MspR9I CCNGG 2 cut(s) 642, 766
MunI CAATTG 1 cut(s) 758
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 956
NciI CCSGG 1 cut(s) 766
NdeII GATC 6 cut(s) 153, 208, 586, 675, 848, 1018
NheI GCTAGC 1 cut(s) 841
NlaIII CATG 5 cut(s) 347, 492, 658, 894, 1108
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 912
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 110, 238, 800
PflMI CCANNNNNTGG 1 cut(s) 836
PkrI GCNGC 3 cut(s) 388, 896, 952
PleI GAGTC 1 cut(s) 1066
PpsI GAGTC 1 cut(s) 1066
Psp124BI GAGCTC 1 cut(s) 907
Psp6I CCWGG 1 cut(s) 640
PspEI GGTNACC 1 cut(s) 434
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 1157
PstNI CAGNNNCTG 1 cut(s) 107
PsuI RGATCY 2 cut(s) 153, 586
RseI CAYNNNNRTG 2 cut(s) 971, 1074
SacI GAGCTC 1 cut(s) 907
SapI GCTCTTC 1 cut(s) 912
SaqAI TTAA 2 cut(s) 59, 771
SatI GCNGC 3 cut(s) 387, 895, 951
Sau3AI GATC 6 cut(s) 153, 208, 586, 675, 848, 1018
Sau96I GGNCC 1 cut(s) 1157
SchI GAGTC 1 cut(s) 1067
ScrFI CCNGG 2 cut(s) 642, 766
SduI GDGCHC 2 cut(s) 205, 907
SexAI ACCWGGT 1 cut(s) 640
SinI GGWCC 1 cut(s) 1157
SmiMI CAYNNNNRTG 2 cut(s) 971, 1074
SmlI CTYRAG 1 cut(s) 1083
SmoI CTYRAG 1 cut(s) 1083
Sse9I AATT 9 cut(s) 60, 118, 265, 355, 500, 552, 758, 864, 931
SsiI CCGC 1 cut(s) 476
SspMI CTAG 3 cut(s) 39, 842, 1035
SstI GAGCTC 1 cut(s) 907
StyD4I CCNGG 2 cut(s) 640, 764
StyI CCWWGG 2 cut(s) 482, 898
TaiI ACGT 1 cut(s) 1181
TasI AATT 9 cut(s) 60, 118, 265, 355, 500, 552, 758, 864, 931
TfiI GAWTC 3 cut(s) 110, 238, 800
Tru1I TTAA 2 cut(s) 59, 771
Tru9I TTAA 2 cut(s) 59, 771
TscAI CASTG 2 cut(s) 475, 1032
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 386, 894, 950
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 8 cut(s) 288, 436, 801, 813, 879, 995, 1064, 1121
TspRI CASTG 2 cut(s) 475, 1032
Van91I CCANNNNNTGG 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 1157
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XmiI GTMKAC 1 cut(s) 1143
XspI CTAG 3 cut(s) 39, 842, 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.