Rw6G041840
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0014672
Physical Location & Seq
Forward (+)
65477602 .. 65479311
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G041840.1

Sequence Viewer

Length: 1224 bp
ATGGAAAGCGGGCTTCCCATGCTTAACTGTTTGTTGCAGCGCACACTCAGAAGCTTGTGTTCATGTTCATCAGATTCCTCTTCCAATTCTTCCAAGTGGGTTTACGCCGTCTTCTGGAGAATCTTGCCTCGGAACTATCCTCCTCCGAAGTGGGATTATGGAAGTAGTGTCCTTGATCGCTCCAAAGGAAACAAAAGGAACTGGATTCTTGTTTGGGAGGATGGGTTCTGTGATTTCTATGAATGTGAGCAAGCAGGAAGTGGCTACTTAAAGGGGAGGTTTGGAGCTGATATTTTCTTCAAAATGTCCCATGAGGTTTATAATTTTGGAGAAGGTTTCTTGGGGAAAGTAGCAGTAGACAACAGTCATAAATGGGTGTTCAGAGATGCACCAAATCATGTGGACAACCCCAACTTCATTTCTTCTTGGAATGTATCCACTGAACCTCAACCAAAGGCATGGACGTTTCAATTCAATTCAGGCATTCAGACTATTGCCATCATTTCTGTTAGAGAAGGCATAATTCAGCTTGGCTCGTTTGATAAGATAGCGGAAGATCTCAATCTGGTGATCAGCATACAGAGGAAGTTCAGCTACCTGCAGAGCATACCAGGTGTTTTTGCCATGCAAAGGCCTTACCTACCTATCCAGCATCCCTACATCCTCAAACCAAGTAACGCCCAGAATATGATTATGAATGGAAGCACTAGTACGTACACTGCTACTACTACTAGTATTGGTGCTGGAGTTAAGAGATTGTTCAACCTCACACCGCCGGACGATCAGATGATCAAGTCCATCAACTTGGGATGGAACACACCACAAAATGGAGTAGGACTAGGACTCGGAGGATCATCATCCGTTTCAGTACCTGATCCTAATTGGTCGACTCCATTTCCACCGCCTCTTCTACCCTCCATTTCATGCAGCCTTGGAGCTCTTCTATCAAAGCTACCTTCAGTTTCACCTTCACCTTATATTAATAATGATGCCATTCATGAAGCTCCCAACACTATTACTACAACCACTACTACAGCTATGCTCATGAACAACAGCAACAACCGCAACAACAATTGTGCCGAAAACAAGATACTGAAGGTTAGTGGTGGCATTATTAAGATAGAGTCATCATCACCATCATCCTGTCATCTAGATGTAGCTCAACAAGAAAAGCACAGTTCCATAGACCCTAATAATCTTGGTTTGGAAAAAGGACAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

407

Amino Acids

44.84

Weight (kDa)

8.05

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 12 - 80 5e-07 bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N PF14215 99 - 197 8.3e-18 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33720 FvH4_2g33720
malus_domestica MD08G1093800.v1.1
prunus_persica Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1
pyrus_communis pycom15g07220
rosa_chinensis RchiOBHm_Chr6g0308831
rosa_laevigata RLG00000010614
rosa_multiflora Rmu_sc0004046.1_g000008
rosa_roxburghii Rroxscaffold_7G00159880
rosa_rugosa Rorug06G0368400.1
rosa_samantha Rh6AG479900 Rh6BG489400 Rh6CG494900 Rh6DG480200
rosa_wichuraiana Rw6G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 827
AccI GTMKAC 2 cut(s) 357, 887
AciI CCGC 5 cut(s) 9, 551, 773, 902, 1063
AclWI GGATC 2 cut(s) 859, 869
AcuI CTGAAG 2 cut(s) 942, 1115
AfaI GTAC 3 cut(s) 712, 716, 870
AfiI CCNNNNNNNGG 3 cut(s) 114, 630, 827
AgsI TTSAA 4 cut(s) 301, 470, 475, 763
AhlI ACTAGT 2 cut(s) 707, 731
AjnI CCWGG 1 cut(s) 610
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 9 cut(s) 54, 287, 529, 594, 938, 952, 1004, 1037, 1160
AluI AGCT 9 cut(s) 54, 287, 529, 594, 938, 952, 1004, 1037, 1160
Alw21I GWGCWC 1 cut(s) 940
AlwI GGATC 2 cut(s) 859, 869
AlwNI CAGNNNCTG 1 cut(s) 872
AoxI GGCC 1 cut(s) 632
ApeKI GCWGC 2 cut(s) 37, 927
AseI ATTAAT 1 cut(s) 981
AspLEI GCGC 1 cut(s) 42
AsuHPI GGTGA 4 cut(s) 580, 957, 963, 1125
BanII GRGCYC 1 cut(s) 940
BarI GAAGNNNNNNTAC 4 cut(s) 578, 610, 694, 726
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 940
BbvI GCAGC 2 cut(s) 49, 939
BccI CCATC 5 cut(s) 215, 506, 804, 806, 1144
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 445
BclI TGATCA 2 cut(s) 570, 789
BcuI ACTAGT 2 cut(s) 707, 731
BfaI CTAG 4 cut(s) 708, 732, 839, 1151
BfmI CTRYAG 2 cut(s) 599, 1032
BfuAI ACCTGC 1 cut(s) 606
BfuI GTATCC 1 cut(s) 445
BglII AGATCT 1 cut(s) 556
BisI GCNGC 2 cut(s) 38, 928
BlsI GCNGC 2 cut(s) 39, 929
Bme1390I CCNGG 1 cut(s) 612
BmrFI CCNGG 1 cut(s) 612
BmsI GCATC 3 cut(s) 376, 661, 979
BoxI GACNNNNGTC 1 cut(s) 363
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 2 cut(s) 136, 765
BsaAI YACGTR 1 cut(s) 714
BsaBI GATNNNNATC 2 cut(s) 561, 856
BsaJI CCNNGG 2 cut(s) 128, 931
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 630, 827
Bse1I ACTGG 1 cut(s) 206
Bse8I GATNNNNATC 2 cut(s) 561, 856
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 2 cut(s) 128, 931
BseGI GGATG 6 cut(s) 226, 652, 660, 815, 857, 1139
BseJI GATNNNNATC 2 cut(s) 561, 856
BseLI CCNNNNNNNGG 3 cut(s) 114, 630, 827
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 2 cut(s) 49, 939
BshFI GGCC 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 940
BsiSI CCGG 1 cut(s) 776
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 114, 630, 827
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 940
Bsp143I GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
BspACI CCGC 5 cut(s) 9, 551, 773, 902, 1063
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 60
BspHI TCATGA 2 cut(s) 997, 1044
BspMAI CTGCAG 1 cut(s) 603
BspMI ACCTGC 1 cut(s) 606
BspPI GGATC 2 cut(s) 859, 869
BspQI GCTCTTC 1 cut(s) 945
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 128, 931
BssMI GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
BssT1I CCWWGG 1 cut(s) 931
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 3 cut(s) 29, 365, 1178
Bst6I CTCTTC 3 cut(s) 85, 912, 945
BstBAI YACGTR 1 cut(s) 714
BstC8I GCNNGC 2 cut(s) 11, 252
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 6 cut(s) 226, 652, 660, 815, 857, 1139
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 7 cut(s) 178, 559, 573, 784, 792, 854, 877
BstMBI GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
BstMWI GCNNNNNNNGC 2 cut(s) 19, 1062
BstNI CCWGG 1 cut(s) 612
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 610
BstSFI CTRYAG 2 cut(s) 599, 1032
BstSNI TACGTA 1 cut(s) 714
BstV1I GCAGC 2 cut(s) 49, 939
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 556
BstXI CCANNNNNNTGG 2 cut(s) 459, 805
BstYI RGATCY 1 cut(s) 556
BsuI GTATCC 1 cut(s) 445
BsuRI GGCC 1 cut(s) 634
BtsCI GGATG 6 cut(s) 226, 652, 660, 815, 857, 1139
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 438, 717
BveI ACCTGC 1 cut(s) 606
Cac8I GCNNGC 2 cut(s) 11, 252
CaiI CAGNNNCTG 1 cut(s) 872
CciI TCATGA 2 cut(s) 997, 1044
CfoI GCGC 1 cut(s) 42
CsiI ACCWGGT 1 cut(s) 610
Csp6I GTAC 3 cut(s) 711, 715, 869
CspCI CAANNNNNGTGG 2 cut(s) 381, 416
CviAII CATG 9 cut(s) 19, 63, 311, 398, 459, 625, 924, 998, 1045
CviQI GTAC 3 cut(s) 711, 715, 869
DdeI CTNAG 1 cut(s) 47
DpnI GATC 7 cut(s) 177, 558, 572, 783, 791, 853, 876
DpnII GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
Eam1104I CTCTTC 3 cut(s) 85, 912, 945
EarI CTCTTC 3 cut(s) 85, 912, 945
Ecl136II GAGCTC 1 cut(s) 938
Eco105I TACGTA 1 cut(s) 714
Eco130I CCWWGG 1 cut(s) 931
Eco147I AGGCCT 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 940
Eco53kI GAGCTC 1 cut(s) 938
Eco57I CTGAAG 2 cut(s) 942, 1115
EcoICRI GAGCTC 1 cut(s) 938
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 940
ErhI CCWWGG 1 cut(s) 931
FaeI CATG 9 cut(s) 22, 66, 314, 401, 462, 628, 927, 1001, 1048
FaqI GGGAC 1 cut(s) 292
FatI CATG 9 cut(s) 18, 62, 310, 397, 458, 624, 923, 997, 1044
FauI CCCGC 1 cut(s) 2
FbaI TGATCA 2 cut(s) 570, 789
FblI GTMKAC 2 cut(s) 357, 887
Fnu4HI GCNGC 2 cut(s) 38, 928
FokI GGATG 6 cut(s) 233, 639, 647, 822, 844, 1126
FriOI GRGCYC 1 cut(s) 940
Fsp4HI GCNGC 2 cut(s) 38, 928
FspBI CTAG 4 cut(s) 708, 732, 839, 1151
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 38, 928
GsuI CTGGAG 2 cut(s) 136, 765
HaeIII GGCC 1 cut(s) 634
HapII CCGG 1 cut(s) 776
HhaI GCGC 1 cut(s) 42
Hin1II CATG 9 cut(s) 22, 66, 314, 401, 462, 628, 927, 1001, 1048
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 6 cut(s) 74, 120, 205, 843, 889, 1124
HpaII CCGG 1 cut(s) 776
HphI GGTGA 4 cut(s) 580, 957, 963, 1125
Hpy166II GTNNAC 5 cut(s) 103, 358, 403, 717, 888
Hpy188I TCNGA 8 cut(s) 50, 73, 132, 147, 383, 489, 786, 848
Hpy188III TCNNGA 4 cut(s) 115, 998, 1045, 1151
Hpy8I GTNNAC 5 cut(s) 103, 358, 403, 717, 888
HpyAV CCTTC 5 cut(s) 326, 509, 966, 978, 1090
HpyCH4III ACNGT 3 cut(s) 29, 365, 1178
HpyCH4IV ACGT 2 cut(s) 464, 713
HpyCH4V TGCA 5 cut(s) 37, 389, 601, 628, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 1062
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 2 cut(s) 464, 713
Hsp92II CATG 9 cut(s) 22, 66, 314, 401, 462, 628, 927, 1001, 1048
HspAI GCGC 1 cut(s) 40
Ksp22I TGATCA 2 cut(s) 570, 789
Kzo9I GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 4 cut(s) 185, 284, 935, 1009
Lsp1109I GCAGC 2 cut(s) 49, 939
LweI GCATC 3 cut(s) 376, 661, 979
MabI ACCWGGT 1 cut(s) 610
MaeI CTAG 4 cut(s) 708, 732, 839, 1151
MaeII ACGT 2 cut(s) 464, 713
MaeIII GTNAC 1 cut(s) 674
MalI GATC 7 cut(s) 177, 558, 572, 783, 791, 853, 876
MboI GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
MboII GAAGA 8 cut(s) 72, 81, 103, 289, 414, 566, 899, 932
MfeI CAATTG 1 cut(s) 1072
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 940
MluCI AATT 7 cut(s) 85, 322, 470, 475, 522, 880, 1072
MlyI GAGTC 3 cut(s) 837, 883, 1133
MseI TTAA 6 cut(s) 24, 269, 750, 981, 1116, 1222
MslI CAYNNNNRTG 1 cut(s) 1152
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 612
MunI CAATTG 1 cut(s) 1072
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 19, 1062
NdeII GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
NlaIII CATG 9 cut(s) 22, 66, 314, 401, 462, 628, 927, 1001, 1048
PagI TCATGA 2 cut(s) 997, 1044
PceI AGGCCT 1 cut(s) 634
PciSI GCTCTTC 1 cut(s) 945
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 74, 120, 205
PflMI CCANNNNNTGG 1 cut(s) 827
PkrI GCNGC 2 cut(s) 39, 929
PleI GAGTC 3 cut(s) 837, 883, 1132
PpsI GAGTC 3 cut(s) 837, 883, 1132
Ppu21I YACGTR 1 cut(s) 714
PshAI GACNNNNGTC 1 cut(s) 363
PshBI ATTAAT 1 cut(s) 981
PsiI TTATAA 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 940
Psp6I CCWGG 1 cut(s) 610
PspGI CCWGG 1 cut(s) 610
PstI CTGCAG 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 1 cut(s) 556
RsaI GTAC 3 cut(s) 712, 716, 870
RsaNI GTAC 3 cut(s) 711, 715, 869
RseI CAYNNNNRTG 1 cut(s) 1152
SacI GAGCTC 1 cut(s) 940
SalI GTCGAC 1 cut(s) 886
SapI GCTCTTC 1 cut(s) 945
SaqAI TTAA 6 cut(s) 24, 269, 750, 981, 1116, 1222
SatI GCNGC 2 cut(s) 38, 928
Sau3AI GATC 7 cut(s) 175, 556, 570, 781, 789, 851, 874
SchI GAGTC 3 cut(s) 837, 883, 1133
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 1 cut(s) 940
SexAI ACCWGGT 1 cut(s) 610
SfaNI GCATC 3 cut(s) 376, 661, 979
SfcI CTRYAG 2 cut(s) 599, 1032
SmiMI CAYNNNNRTG 1 cut(s) 1152
SnaBI TACGTA 1 cut(s) 714
SpeI ACTAGT 2 cut(s) 707, 731
Sse9I AATT 7 cut(s) 85, 322, 470, 475, 522, 880, 1072
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 5 cut(s) 9, 551, 773, 902, 1063
SspMI CTAG 4 cut(s) 708, 732, 839, 1151
SstI GAGCTC 1 cut(s) 940
StuI AGGCCT 1 cut(s) 634
StyD4I CCNGG 1 cut(s) 610
StyI CCWWGG 1 cut(s) 931
TaaI ACNGT 3 cut(s) 29, 365, 1178
TaiI ACGT 2 cut(s) 467, 716
TaqI TCGA 1 cut(s) 887
TasI AATT 7 cut(s) 85, 322, 470, 475, 522, 880, 1072
TfiI GAWTC 3 cut(s) 74, 120, 205
Tru1I TTAA 6 cut(s) 24, 269, 750, 981, 1116, 1222
Tru9I TTAA 6 cut(s) 24, 269, 750, 981, 1116, 1222
TscAI CASTG 2 cut(s) 445, 724
TseI GCWGC 2 cut(s) 37, 927
TspDTI ATGAA 9 cut(s) 51, 57, 255, 406, 710, 912, 986, 1014, 1061
TspGWI ACGGA 1 cut(s) 850
TspRI CASTG 2 cut(s) 445, 724
Van91I CCANNNNNTGG 1 cut(s) 827
VspI ATTAAT 1 cut(s) 981
XbaI TCTAGA 1 cut(s) 1150
XmiI GTMKAC 2 cut(s) 357, 887
XspI CTAG 4 cut(s) 708, 732, 839, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.