Rh6DG480200
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014672
Physical Location & Seq
Forward (+)
64484395 .. 64487512
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG480200.1

Sequence Viewer

Length: 1035 bp
ATGGTTTCTTCCAGGATTCTTGTTTGGGAGGATGGGTTCTGTGATTTCTATGAATGTGAACAAGCAGGAAGTGGCTACTTAAAGGGGAGGTTTGGAGCTGATATTTTCTTCAAAATGTCCCATGAGGTTTATAATTTTGGAGAAGGTTTATTGGGGAAAGTAGCAGTAGACAATAGTCATAAATGGGTGTTCAGAGATGCACCAAATCAAGTGGACAACCCCAACTTCATTTCCTCTTGGAATGTATCCACTGAACCTCAACCAAAGGCATGGGCGTTTCAATTCAATTCAGGCATTCAGACTATTGCCATCATTTCTGTTAGAGAAGGCATAATTCAGCTTGGCTCGTTTGATAAGATAGCGGAAGATCTCAATCTGGTGATCAGCATACAGAGGAAGTTCAGCTACCTGCAGAGCATACCAGGTGTTTTCGCCATGCAAAGGCCTTACCTACCTATCCAGCATCCCTACATCCTCAAAGCAAGTAACGCCCAGAATATGATTATGAATGGAAGCACTAGTACGTACACTGCTACTACTACTAGTATTGGTGCTGGGGTTAAGAGATTGTTCAACCTCACACCGCCGGATGATCAGATGATCAAGTCCATCAACTTGGGATGGAACACACCACAAAATGGAATAGGACTAGGACTCGGAGGATCATCATCCGTTTCAGTACCTGATCCTAATTGGTCGGTTCCATTTCCACCGCCTCTTCTACCCTCCATTTCATGCAGCCTTGGAGCTCTTCTATCAAAGCTACCTTCTGTTTCACCTTATTCCCCTTATATTAATGATGCCATTCATGAAGCTCCCAACACTATTACTACATCTACTACTACAGCTATGCTCATGAACAACAGCAACAACCACAACAACAATTGTGCCGAAAACAAGATACTGAAGGTTAGTGGTGGCATTATTAAGATAGAGTCATCATCACCATCATCCTGTCATTTAGATGTAGCTCAACAAGAAAAGCACAGTTCCATAGACCCTAATAATCTTGGTTTGGAAAAAGGACAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

344

Amino Acids

37.48

Weight (kDa)

5.97

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 35 - 134 2.1e-18 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33720 FvH4_2g33720
malus_domestica MD08G1093800.v1.1
prunus_persica Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1
pyrus_communis pycom15g07220
rosa_chinensis RchiOBHm_Chr6g0308831
rosa_laevigata RLG00000010614
rosa_multiflora Rmu_sc0004046.1_g000008
rosa_roxburghii Rroxscaffold_7G00159880
rosa_rugosa Rorug06G0368400.1
rosa_samantha Rh6AG479900 Rh6BG489400 Rh6CG494900 Rh6DG480200
rosa_wichuraiana Rw6G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 638
AccI GTMKAC 1 cut(s) 168
AciI CCGC 3 cut(s) 362, 584, 713
AclWI GGATC 2 cut(s) 670, 680
AcuI CTGAAG 1 cut(s) 926
AfaI GTAC 3 cut(s) 523, 527, 681
AfiI CCNNNNNNNGG 2 cut(s) 441, 638
AgsI TTSAA 4 cut(s) 112, 281, 286, 574
AhlI ACTAGT 2 cut(s) 518, 542
AjnI CCWGG 2 cut(s) 11, 421
AloI GAACNNNNNNTCC 2 cut(s) 20, 52
AluBI AGCT 8 cut(s) 98, 340, 405, 749, 763, 815, 848, 971
AluI AGCT 8 cut(s) 98, 340, 405, 749, 763, 815, 848, 971
Alw21I GWGCWC 1 cut(s) 751
AlwI GGATC 2 cut(s) 670, 680
AlwNI CAGNNNCTG 1 cut(s) 683
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 738
AseI ATTAAT 1 cut(s) 795
AsuHPI GGTGA 3 cut(s) 391, 768, 936
BanII GRGCYC 1 cut(s) 751
BarI GAAGNNNNNNTAC 4 cut(s) 389, 421, 505, 537
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 1 cut(s) 750
BccI CCATC 5 cut(s) 26, 317, 615, 617, 955
BciT130I CCWGG 2 cut(s) 13, 423
BciVI GTATCC 1 cut(s) 256
BclI TGATCA 3 cut(s) 381, 592, 600
BcuI ACTAGT 2 cut(s) 518, 542
BfaI CTAG 3 cut(s) 519, 543, 650
BfmI CTRYAG 2 cut(s) 410, 843
BfuAI ACCTGC 1 cut(s) 417
BfuI GTATCC 1 cut(s) 256
BglII AGATCT 1 cut(s) 367
BisI GCNGC 1 cut(s) 739
BlsI GCNGC 1 cut(s) 740
Bme1390I CCNGG 2 cut(s) 13, 423
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 2 cut(s) 13, 423
BmsI GCATC 3 cut(s) 187, 472, 790
BoxI GACNNNNGTC 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 525
BsaBI GATNNNNATC 2 cut(s) 372, 667
BsaJI CCNNGG 1 cut(s) 742
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 638
Bse8I GATNNNNATC 2 cut(s) 372, 667
BseBI CCWGG 2 cut(s) 13, 423
BseDI CCNNGG 1 cut(s) 742
BseGI GGATG 7 cut(s) 37, 463, 471, 595, 626, 668, 950
BseJI GATNNNNATC 2 cut(s) 372, 667
BseLI CCNNNNNNNGG 2 cut(s) 441, 638
BseXI GCAGC 1 cut(s) 750
BseYI CCCAGC 1 cut(s) 554
BshFI GGCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 751
BsiSI CCGG 1 cut(s) 587
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 441, 638
BsmFI GGGAC 1 cut(s) 103
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 751
Bsp143I GATC 6 cut(s) 367, 381, 592, 600, 662, 685
BspACI CCGC 3 cut(s) 362, 584, 713
BspANI GGCC 1 cut(s) 445
BspHI TCATGA 2 cut(s) 808, 855
BspLI GGNNCC 1 cut(s) 702
BspMAI CTGCAG 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 670, 680
BspQI GCTCTTC 1 cut(s) 756
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 6 cut(s) 367, 381, 592, 600, 662, 685
BssT1I CCWWGG 1 cut(s) 742
Bst2UI CCWGG 2 cut(s) 13, 423
Bst4CI ACNGT 1 cut(s) 989
Bst6I CTCTTC 2 cut(s) 723, 756
BstBAI YACGTR 1 cut(s) 525
BstF5I GGATG 7 cut(s) 37, 463, 471, 595, 626, 668, 950
BstKTI GATC 6 cut(s) 370, 384, 595, 603, 665, 688
BstMBI GATC 6 cut(s) 367, 381, 592, 600, 662, 685
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 2 cut(s) 13, 423
BstPAI GACNNNNGTC 1 cut(s) 174
BstSCI CCNGG 2 cut(s) 11, 421
BstSFI CTRYAG 2 cut(s) 410, 843
BstSNI TACGTA 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 750
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 2 cut(s) 270, 616
BstYI RGATCY 1 cut(s) 367
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 445
BtsCI GGATG 7 cut(s) 37, 463, 471, 595, 626, 668, 950
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 249, 528
BveI ACCTGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 683
CciI TCATGA 2 cut(s) 808, 855
CsiI ACCWGGT 1 cut(s) 421
Csp6I GTAC 3 cut(s) 522, 526, 680
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 6 cut(s) 122, 270, 436, 735, 809, 856
CviQI GTAC 3 cut(s) 522, 526, 680
DpnI GATC 6 cut(s) 369, 383, 594, 602, 664, 687
DpnII GATC 6 cut(s) 367, 381, 592, 600, 662, 685
Eam1104I CTCTTC 2 cut(s) 723, 756
EarI CTCTTC 2 cut(s) 723, 756
Ecl136II GAGCTC 1 cut(s) 749
Eco105I TACGTA 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 742
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 751
Eco53kI GAGCTC 1 cut(s) 749
Eco57I CTGAAG 1 cut(s) 926
EcoICRI GAGCTC 1 cut(s) 749
EcoRII CCWGG 2 cut(s) 11, 421
EcoT14I CCWWGG 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 6 cut(s) 125, 273, 439, 738, 812, 859
FaqI GGGAC 1 cut(s) 103
FatI CATG 6 cut(s) 121, 269, 435, 734, 808, 855
FbaI TGATCA 3 cut(s) 381, 592, 600
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 739
FokI GGATG 7 cut(s) 44, 450, 458, 602, 633, 655, 937
FriOI GRGCYC 1 cut(s) 751
Fsp4HI GCNGC 1 cut(s) 739
FspBI CTAG 3 cut(s) 519, 543, 650
GluI GCNGC 1 cut(s) 739
GsaI CCCAGC 1 cut(s) 558
HaeIII GGCC 1 cut(s) 445
HapII CCGG 1 cut(s) 587
Hin1II CATG 6 cut(s) 125, 273, 439, 738, 812, 859
HinfI GANTC 3 cut(s) 16, 654, 935
HpaII CCGG 1 cut(s) 587
HphI GGTGA 3 cut(s) 391, 768, 936
Hpy166II GTNNAC 4 cut(s) 59, 169, 214, 528
Hpy188I TCNGA 4 cut(s) 194, 300, 597, 659
Hpy188III TCNNGA 2 cut(s) 809, 856
Hpy8I GTNNAC 4 cut(s) 59, 169, 214, 528
HpyAV CCTTC 4 cut(s) 137, 320, 777, 901
HpyCH4III ACNGT 1 cut(s) 989
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 4 cut(s) 200, 412, 439, 738
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 6 cut(s) 125, 273, 439, 738, 812, 859
Ksp22I TGATCA 3 cut(s) 381, 592, 600
Kzo9I GATC 6 cut(s) 367, 381, 592, 600, 662, 685
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 3 cut(s) 95, 746, 820
Lsp1109I GCAGC 1 cut(s) 750
LweI GCATC 3 cut(s) 187, 472, 790
MabI ACCWGGT 1 cut(s) 421
MaeI CTAG 3 cut(s) 519, 543, 650
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 1 cut(s) 485
MalI GATC 6 cut(s) 369, 383, 594, 602, 664, 687
MboI GATC 6 cut(s) 367, 381, 592, 600, 662, 685
MboII GAAGA 4 cut(s) 100, 377, 710, 743
MfeI CAATTG 1 cut(s) 883
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 751
MluCI AATT 6 cut(s) 133, 281, 286, 333, 691, 883
MlyI GAGTC 2 cut(s) 648, 944
MseI TTAA 5 cut(s) 80, 561, 795, 927, 1033
MslI CAYNNNNRTG 1 cut(s) 963
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 2 cut(s) 13, 423
MunI CAATTG 1 cut(s) 883
Mva1269I GAATGC 1 cut(s) 294
MvaI CCWGG 2 cut(s) 13, 423
MwoI GCNNNNNNNGC 1 cut(s) 488
NdeII GATC 6 cut(s) 367, 381, 592, 600, 662, 685
NlaIII CATG 6 cut(s) 125, 273, 439, 738, 812, 859
NlaIV GGNNCC 1 cut(s) 702
PagI TCATGA 2 cut(s) 808, 855
PceI AGGCCT 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 756
PctI GAATGC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 638
PfoI TCCNGGA 1 cut(s) 11
PkrI GCNGC 1 cut(s) 740
PleI GAGTC 2 cut(s) 648, 943
PpsI GAGTC 2 cut(s) 648, 943
Ppu21I YACGTR 1 cut(s) 525
PshAI GACNNNNGTC 1 cut(s) 174
PshBI ATTAAT 1 cut(s) 795
PsiI TTATAA 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 751
Psp6I CCWGG 2 cut(s) 11, 421
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 2 cut(s) 11, 421
PspN4I GGNNCC 1 cut(s) 702
PstI CTGCAG 1 cut(s) 414
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 3 cut(s) 523, 527, 681
RsaNI GTAC 3 cut(s) 522, 526, 680
RseI CAYNNNNRTG 1 cut(s) 963
SacI GAGCTC 1 cut(s) 751
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 5 cut(s) 80, 561, 795, 927, 1033
SatI GCNGC 1 cut(s) 739
Sau3AI GATC 6 cut(s) 367, 381, 592, 600, 662, 685
SchI GAGTC 2 cut(s) 648, 944
ScrFI CCNGG 2 cut(s) 13, 423
SduI GDGCHC 1 cut(s) 751
SexAI ACCWGGT 1 cut(s) 421
SfaNI GCATC 3 cut(s) 187, 472, 790
SfcI CTRYAG 2 cut(s) 410, 843
SmiMI CAYNNNNRTG 1 cut(s) 963
SnaBI TACGTA 1 cut(s) 525
SpeI ACTAGT 2 cut(s) 518, 542
Sse9I AATT 6 cut(s) 133, 281, 286, 333, 691, 883
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 3 cut(s) 362, 584, 713
SspMI CTAG 3 cut(s) 519, 543, 650
SstI GAGCTC 1 cut(s) 751
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 2 cut(s) 11, 421
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 1 cut(s) 989
TaiI ACGT 1 cut(s) 527
TasI AATT 6 cut(s) 133, 281, 286, 333, 691, 883
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 5 cut(s) 80, 561, 795, 927, 1033
Tru9I TTAA 5 cut(s) 80, 561, 795, 927, 1033
TscAI CASTG 2 cut(s) 256, 535
TseI GCWGC 1 cut(s) 738
TspDTI ATGAA 7 cut(s) 66, 217, 521, 723, 797, 825, 872
TspGWI ACGGA 1 cut(s) 661
TspRI CASTG 2 cut(s) 256, 535
Van91I CCANNNNNTGG 1 cut(s) 638
VspI ATTAAT 1 cut(s) 795
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 3 cut(s) 519, 543, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.