Rh6BG489400
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014672
Physical Location & Seq
Forward (+)
69339540 .. 69341952
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG489400.1

Sequence Viewer

Length: 921 bp
ATGTCCCATGAGGTTTATAATTTTGGAGAAGGTTTATTGGGGAAAGTAGCAGTAGACAATAGTCATAAATGGGTGTTCAGAGATGCACCAAATCAAGTGGACAACCCCAACTTCATTTCCTCTTGGAATGTATCCACTGAACCTCAACCAAAGGCATGGGCGTTTCAATTCAATTCAGGCATTCAGACTATTGCCATCATTTCTGTTAGAGAAGGCATAATTCAGCTTGGCTCGTTTGATAAGATAGCGGAAGATCTCAATCTGGTGATCAGCATACAGAGGAAGTTCAGCTACCTGCAGAGCATACCAGGTGTTTTCGCCATGCAAAGGCCTTACCTGCCTATCCAGCATCCCTACATCCTCAAACCAAGTAACGCCCAGAATATGATTATGAATGGAAGCACTAGTACGTACACTGCTACTACTACTAGTATTGGTGCTGGGGTTAAGAGATTGTTCAACCTCACACCGCCGGATGATCAGATGATCAAGTCCATCAACTTGGGATGGAACACACCACAAAATGGAATAGGACTAGGACTCGGAGGATCATCATCCGTTTCAGTACCTGATCCTAATTGGTCGATTCCATTTCCACCGCCTCTTCTACCCTCCATTTCATGCAGCCTTGGAGCTCTTCTATCAAAGCTACCTTCTGCTTCACCTTATTCCCCTTATATTAATGATGCCATTCATGAAGCTCCCAACACTATTACTACATCTACTACTACAGCTATGCTCATGAACAACAGCAACAACAACAACAACAATTGTGCCGAAAACAAGATACTGAAGGTTAGTGGTGGCATTATTAAGATAGAGTCATCATCACCATCATCCTGTCATTTAGATGTAGCTCAACAAGAAAAGCACAGTTCCATAGACCCTAATAATCTTGGTTTGGAAAAAGGACAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

306

Amino Acids

33.11

Weight (kDa)

6.29

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 3 - 96 2.4e-17 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014672)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33720 FvH4_2g33720
malus_domestica MD08G1093800.v1.1
prunus_persica Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1 Prupe.1G430900_v2.0.a1
pyrus_communis pycom15g07220
rosa_chinensis RchiOBHm_Chr6g0308831
rosa_laevigata RLG00000010614
rosa_multiflora Rmu_sc0004046.1_g000008
rosa_roxburghii Rroxscaffold_7G00159880
rosa_rugosa Rorug06G0368400.1
rosa_samantha Rh6AG479900 Rh6BG489400 Rh6CG494900 Rh6DG480200
rosa_wichuraiana Rw6G041840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 18
Acc36I ACCTGC 2 cut(s) 303, 345
AccB7I CCANNNNNTGG 1 cut(s) 524
AccI GTMKAC 1 cut(s) 54
AciI CCGC 3 cut(s) 248, 470, 599
AclWI GGATC 2 cut(s) 556, 566
AcuI CTGAAG 1 cut(s) 812
AfaI GTAC 3 cut(s) 409, 413, 567
AfiI CCNNNNNNNGG 2 cut(s) 327, 524
AgsI TTSAA 3 cut(s) 167, 172, 460
AhlI ACTAGT 2 cut(s) 404, 428
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 7 cut(s) 226, 291, 635, 649, 701, 734, 857
AluI AGCT 7 cut(s) 226, 291, 635, 649, 701, 734, 857
Alw21I GWGCWC 1 cut(s) 637
AlwI GGATC 2 cut(s) 556, 566
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 624
AseI ATTAAT 1 cut(s) 681
AsuHPI GGTGA 3 cut(s) 277, 654, 822
BanII GRGCYC 1 cut(s) 637
BarI GAAGNNNNNNTAC 4 cut(s) 275, 307, 391, 423
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 1 cut(s) 636
BccI CCATC 4 cut(s) 203, 501, 503, 841
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 142
BclI TGATCA 3 cut(s) 267, 478, 486
BcuI ACTAGT 2 cut(s) 404, 428
BfaI CTAG 3 cut(s) 405, 429, 536
BfmI CTRYAG 2 cut(s) 296, 729
BfuAI ACCTGC 2 cut(s) 303, 345
BfuI GTATCC 1 cut(s) 142
BglII AGATCT 1 cut(s) 253
BisI GCNGC 1 cut(s) 625
BlsI GCNGC 1 cut(s) 626
Bme1390I CCNGG 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 3 cut(s) 73, 358, 676
BoxI GACNNNNGTC 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 411
BsaBI GATNNNNATC 2 cut(s) 258, 553
BsaJI CCNNGG 1 cut(s) 628
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 524
Bse8I GATNNNNATC 2 cut(s) 258, 553
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 628
BseGI GGATG 6 cut(s) 349, 357, 481, 512, 554, 836
BseJI GATNNNNATC 2 cut(s) 258, 553
BseLI CCNNNNNNNGG 2 cut(s) 327, 524
BseXI GCAGC 1 cut(s) 636
BseYI CCCAGC 1 cut(s) 440
BshFI GGCC 1 cut(s) 331
BsiHKAI GWGCWC 1 cut(s) 637
BsiSI CCGG 1 cut(s) 473
BslI CCNNNNNNNGG 2 cut(s) 327, 524
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 6 cut(s) 253, 267, 478, 486, 548, 571
BspACI CCGC 3 cut(s) 248, 470, 599
BspANI GGCC 1 cut(s) 331
BspHI TCATGA 2 cut(s) 694, 741
BspMAI CTGCAG 1 cut(s) 300
BspMI ACCTGC 2 cut(s) 303, 345
BspPI GGATC 2 cut(s) 556, 566
BspQI GCTCTTC 1 cut(s) 642
BssECI CCNNGG 1 cut(s) 628
BssMI GATC 6 cut(s) 253, 267, 478, 486, 548, 571
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 875
Bst6I CTCTTC 2 cut(s) 609, 642
BstBAI YACGTR 1 cut(s) 411
BstF5I GGATG 6 cut(s) 349, 357, 481, 512, 554, 836
BstKTI GATC 6 cut(s) 256, 270, 481, 489, 551, 574
BstMBI GATC 6 cut(s) 253, 267, 478, 486, 548, 571
BstMWI GCNNNNNNNGC 2 cut(s) 337, 346
BstNI CCWGG 1 cut(s) 309
BstPAI GACNNNNGTC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 2 cut(s) 296, 729
BstSNI TACGTA 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 2 cut(s) 156, 502
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 331
BtsCI GGATG 6 cut(s) 349, 357, 481, 512, 554, 836
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 2 cut(s) 135, 414
BveI ACCTGC 2 cut(s) 303, 345
CaiI CAGNNNCTG 1 cut(s) 569
CciI TCATGA 2 cut(s) 694, 741
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 3 cut(s) 408, 412, 566
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviAII CATG 6 cut(s) 8, 156, 322, 621, 695, 742
CviQI GTAC 3 cut(s) 408, 412, 566
DpnI GATC 6 cut(s) 255, 269, 480, 488, 550, 573
DpnII GATC 6 cut(s) 253, 267, 478, 486, 548, 571
Eam1104I CTCTTC 2 cut(s) 609, 642
EarI CTCTTC 2 cut(s) 609, 642
Ecl136II GAGCTC 1 cut(s) 635
Eco105I TACGTA 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 628
Eco147I AGGCCT 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 635
Eco57I CTGAAG 1 cut(s) 812
EcoICRI GAGCTC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 6 cut(s) 11, 159, 325, 624, 698, 745
FatI CATG 6 cut(s) 7, 155, 321, 620, 694, 741
FbaI TGATCA 3 cut(s) 267, 478, 486
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 625
FokI GGATG 6 cut(s) 336, 344, 488, 519, 541, 823
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 1 cut(s) 625
FspBI CTAG 3 cut(s) 405, 429, 536
GluI GCNGC 1 cut(s) 625
GsaI CCCAGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 331
HapII CCGG 1 cut(s) 473
Hin1II CATG 6 cut(s) 11, 159, 325, 624, 698, 745
HinfI GANTC 3 cut(s) 540, 586, 821
HpaII CCGG 1 cut(s) 473
HphI GGTGA 3 cut(s) 277, 654, 822
Hpy166II GTNNAC 3 cut(s) 55, 100, 414
Hpy188I TCNGA 4 cut(s) 80, 186, 483, 545
Hpy188III TCNNGA 2 cut(s) 695, 742
Hpy8I GTNNAC 3 cut(s) 55, 100, 414
HpyAV CCTTC 4 cut(s) 23, 206, 663, 787
HpyCH4III ACNGT 1 cut(s) 875
HpyCH4IV ACGT 1 cut(s) 410
HpyCH4V TGCA 4 cut(s) 86, 298, 325, 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 346
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 6 cut(s) 11, 159, 325, 624, 698, 745
Ksp22I TGATCA 3 cut(s) 267, 478, 486
Kzo9I GATC 6 cut(s) 253, 267, 478, 486, 548, 571
LguI GCTCTTC 1 cut(s) 642
LmnI GCTCC 2 cut(s) 632, 706
Lsp1109I GCAGC 1 cut(s) 636
LweI GCATC 3 cut(s) 73, 358, 676
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 3 cut(s) 405, 429, 536
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 1 cut(s) 371
MalI GATC 6 cut(s) 255, 269, 480, 488, 550, 573
MboI GATC 6 cut(s) 253, 267, 478, 486, 548, 571
MboII GAAGA 3 cut(s) 263, 596, 629
MfeI CAATTG 1 cut(s) 769
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 6 cut(s) 19, 167, 172, 219, 577, 769
MlyI GAGTC 2 cut(s) 534, 830
MnlI CCTC 9 cut(s) 4, 130, 153, 273, 371, 473, 539, 612, 622
MseI TTAA 4 cut(s) 447, 681, 813, 919
MslI CAYNNNNRTG 1 cut(s) 849
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 769
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 337, 346
NdeII GATC 6 cut(s) 253, 267, 478, 486, 548, 571
NlaIII CATG 6 cut(s) 11, 159, 325, 624, 698, 745
PagI TCATGA 2 cut(s) 694, 741
PceI AGGCCT 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 642
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 586
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 1 cut(s) 626
PleI GAGTC 2 cut(s) 534, 829
PpsI GAGTC 2 cut(s) 534, 829
Ppu21I YACGTR 1 cut(s) 411
PshAI GACNNNNGTC 1 cut(s) 60
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 637
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 307
PstI CTGCAG 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 569
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 3 cut(s) 409, 413, 567
RsaNI GTAC 3 cut(s) 408, 412, 566
RseI CAYNNNNRTG 1 cut(s) 849
SacI GAGCTC 1 cut(s) 637
SapI GCTCTTC 1 cut(s) 642
SaqAI TTAA 4 cut(s) 447, 681, 813, 919
SatI GCNGC 1 cut(s) 625
Sau3AI GATC 6 cut(s) 253, 267, 478, 486, 548, 571
SchI GAGTC 2 cut(s) 534, 830
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 637
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 3 cut(s) 73, 358, 676
SfcI CTRYAG 2 cut(s) 296, 729
SmiMI CAYNNNNRTG 1 cut(s) 849
SnaBI TACGTA 1 cut(s) 411
SpeI ACTAGT 2 cut(s) 404, 428
Sse9I AATT 6 cut(s) 19, 167, 172, 219, 577, 769
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 3 cut(s) 248, 470, 599
SspMI CTAG 3 cut(s) 405, 429, 536
SstI GAGCTC 1 cut(s) 637
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 1 cut(s) 875
TaiI ACGT 1 cut(s) 413
TaqI TCGA 1 cut(s) 584
TasI AATT 6 cut(s) 19, 167, 172, 219, 577, 769
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 4 cut(s) 447, 681, 813, 919
Tru9I TTAA 4 cut(s) 447, 681, 813, 919
TscAI CASTG 2 cut(s) 142, 421
TseI GCWGC 1 cut(s) 624
TspDTI ATGAA 6 cut(s) 103, 407, 609, 683, 711, 758
TspGWI ACGGA 1 cut(s) 547
TspRI CASTG 2 cut(s) 142, 421
Van91I CCANNNNNTGG 1 cut(s) 524
VspI ATTAAT 1 cut(s) 681
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 3 cut(s) 405, 429, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.