FvH4_2g35390

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015896
Physical Location & Seq
Reverse (-)
26107209 .. 26108271
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35390.t1

Sequence Viewer

Length: 729 bp
ATGTTTTATCATAGTCCACAAACATTTGATCTCAAAGTCCTTGGAGAGCAGTATAAATTAGTCTCCAAGTCCTTGGTTTTTCAAACTCAAATTCCCAAAGCTTCAATGATCTCGAACCCTAGCCTAATAATGGCCCCAACCAGAGAAATCCACATGGGTTCCTACTCCAAGAGCAAGCCACCAACACTCTCAATGGGAAGTAGTACTATCCAAAGAACCAAATCCGACATTTCGATCGAAGTTCTGAGCAAAGAGTTAGCAGCTGTTGACATTCATGAAGACGACGAGAAGCCGCTGCCGCCGATATCGGAAGTCGAAGAGGCCAAATGCGAGTGCTGTGGCATGTCGGAGGAGTGCACGGCCGAGTACATAAACCGCGTCAGAAACCAGTTTTCGGGGAAGCTGATTTGCGGGCTGTGCGCTGAGGCAGTGAATGGAGAGATGGACAAGAATGGTGGAAAGAAGGACGAGGCTGTGAATGAGCACATGAGTGCTTGTGTCAAGTTCAATAAGCTTGAGAGGGCAAACCCTGTTCTGTACCAAGCTGAGGCCATCAAAGACATTTTGAGAAAGAGTTCTAGTTCTTCTAGTACCAGCAGGTCCAAATCTATGAGTTATAAGAGTGGTGTTCAGAAGAACAATGGCGGTCTGGCGAGGAGCTCCAGTTGCATTCCGGCTATCACCACCAGAGAAGTTGGCGACCGTTACACTAGTAAACCGAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

243

Amino Acids

26.57

Weight (kDa)

8.34

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 105 - 195 2.2e-34 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25840
fragaria_vesca FvH4_2g35390
malus_domestica MD08G1112600.v1.1 MD15G1091900.v1.1
prunus_persica Prupe.1G446800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306521
rosa_laevigata RLG00000010790
rosa_multiflora Rmu_sc0002971.1_g000007
rosa_roxburghii Rroxscaffold_7G00161700
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462200 Rh6BG438500 Rh6CG476500 Rh6DG463200
rosa_wichuraiana Rw6G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
Acc36I ACCTGC 1 cut(s) 588
AccII CGCG 1 cut(s) 378
AciI CCGC 5 cut(s) 293, 299, 376, 411, 645
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 90
AfaI GTAC 4 cut(s) 205, 368, 539, 592
AfiI CCNNNNNNNGG 3 cut(s) 130, 394, 547
AgsI TTSAA 3 cut(s) 83, 105, 508
AhlI ACTAGT 1 cut(s) 710
AleI CACNNNNGTG 1 cut(s) 489
AluBI AGCT 6 cut(s) 101, 263, 403, 514, 545, 660
AluI AGCT 6 cut(s) 101, 263, 403, 514, 545, 660
Alw21I GWGCWC 3 cut(s) 359, 486, 662
Alw26I GTCTC 1 cut(s) 67
Alw44I GTGCAC 1 cut(s) 355
AoxI GGCC 4 cut(s) 132, 321, 360, 549
ApaLI GTGCAC 1 cut(s) 355
ApeKI GCWGC 2 cut(s) 260, 295
ApoI RAATTY 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 574
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 2 cut(s) 133, 600
AsuHPI GGTGA 1 cut(s) 673
AvaII GGWCC 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 662
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 3 cut(s) 359, 486, 662
BbvCI CCTCAGC 2 cut(s) 423, 546
BbvI GCAGC 2 cut(s) 272, 282
BccI CCATC 2 cut(s) 436, 560
BceAI ACGGC 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 67
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 5 cut(s) 120, 579, 588, 711, 727
BfuAI ACCTGC 1 cut(s) 588
BisI GCNGC 4 cut(s) 261, 293, 296, 299
BlsI GCNGC 4 cut(s) 262, 294, 297, 300
BmcAI AGTACT 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 2 cut(s) 133, 600
BmiI GGNNCC 2 cut(s) 135, 160
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 646
Bpu10I CCTNAGC 2 cut(s) 423, 546
BpuEI CTTGAG 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 40, 72
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 394, 547
Bse1I ACTGG 2 cut(s) 388, 663
BseDI CCNNGG 2 cut(s) 40, 72
BseLI CCNNNNNNNGG 3 cut(s) 130, 394, 547
BseMII CTCAG 3 cut(s) 236, 414, 537
BseNI ACTGG 2 cut(s) 388, 663
BseRI GAGGAG 2 cut(s) 365, 670
BseSI GKGCMC 1 cut(s) 359
BseX3I CGGCCG 1 cut(s) 360
BseXI GCAGC 2 cut(s) 272, 282
Bsh1236I CGCG 1 cut(s) 378
Bsh1285I CGRYCG 3 cut(s) 237, 363, 703
BshFI GGCC 4 cut(s) 134, 323, 362, 551
BsiEI CGRYCG 3 cut(s) 237, 363, 703
BsiHKAI GWGCWC 3 cut(s) 359, 486, 662
BsiSI CCGG 1 cut(s) 674
BslI CCNNNNNNNGG 3 cut(s) 130, 394, 547
BsmAI GTCTC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 4 cut(s) 134, 323, 362, 551
Bsp1286I GDGCHC 3 cut(s) 359, 486, 662
Bsp143I GATC 3 cut(s) 28, 108, 234
BspACI CCGC 5 cut(s) 293, 299, 376, 411, 645
BspANI GGCC 4 cut(s) 134, 323, 362, 551
BspCNI CTCAG 3 cut(s) 237, 415, 538
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 135, 160
BspMI ACCTGC 1 cut(s) 588
BsrI ACTGG 2 cut(s) 388, 663
BssECI CCNNGG 2 cut(s) 40, 72
BssMI GATC 3 cut(s) 28, 108, 234
BssT1I CCWWGG 2 cut(s) 40, 72
Bst4CI ACNGT 1 cut(s) 704
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 176, 413
BstDEI CTNAG 3 cut(s) 245, 423, 546
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 3 cut(s) 31, 111, 237
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 3 cut(s) 28, 108, 234
BstMCI CGRYCG 3 cut(s) 237, 363, 703
BstMWI GCNNNNNNNGC 3 cut(s) 298, 417, 666
BstNSI RCATGY 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 359
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 272, 282
BstV2I GAAGAC 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 73
BstZI CGGCCG 1 cut(s) 360
BsuRI GGCC 4 cut(s) 134, 323, 362, 551
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 435
BveI ACCTGC 1 cut(s) 588
Cac8I GCNNGC 2 cut(s) 176, 413
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 133, 600
CseI GACGC 1 cut(s) 367
Csp6I GTAC 4 cut(s) 204, 367, 538, 591
CspCI CAANNNNNGTGG 2 cut(s) 436, 471
CviAII CATG 4 cut(s) 154, 275, 343, 487
CviQI GTAC 4 cut(s) 204, 367, 538, 591
DdeI CTNAG 3 cut(s) 245, 423, 546
DpnI GATC 3 cut(s) 30, 110, 236
DpnII GATC 3 cut(s) 28, 108, 234
EaeI YGGCCR 1 cut(s) 360
EagI CGGCCG 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 660
EclXI CGGCCG 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 40, 72
Eco24I GRGCYC 1 cut(s) 662
Eco32I GATATC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 600
Eco52I CGGCCG 1 cut(s) 360
Eco53kI GAGCTC 1 cut(s) 660
EcoICRI GAGCTC 1 cut(s) 660
EcoRV GATATC 1 cut(s) 306
EcoT14I CCWWGG 2 cut(s) 40, 72
EcoT38I GRGCYC 1 cut(s) 662
ErhI CCWWGG 2 cut(s) 40, 72
FaeI CATG 4 cut(s) 157, 278, 346, 490
FaiI YATR 9 cut(s) 12, 54, 155, 276, 344, 371, 488, 611, 618
FatI CATG 4 cut(s) 153, 274, 342, 486
FauI CCCGC 1 cut(s) 404
Fnu4HI GCNGC 4 cut(s) 261, 293, 296, 299
FriOI GRGCYC 1 cut(s) 662
Fsp4HI GCNGC 4 cut(s) 261, 293, 296, 299
FspBI CTAG 5 cut(s) 120, 579, 588, 711, 727
GlaI GCGC 1 cut(s) 421
GluI GCNGC 4 cut(s) 261, 293, 296, 299
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 4 cut(s) 134, 323, 362, 551
HapII CCGG 1 cut(s) 674
HgaI GACGC 1 cut(s) 367
HhaI GCGC 1 cut(s) 422
Hin1II CATG 4 cut(s) 157, 278, 346, 490
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 99, 512
HpaII CCGG 1 cut(s) 674
HphI GGTGA 1 cut(s) 673
Hpy166II GTNNAC 4 cut(s) 17, 268, 357, 716
Hpy188I TCNGA 6 cut(s) 226, 246, 310, 349, 383, 633
Hpy188III TCNNGA 2 cut(s) 112, 275
Hpy8I GTNNAC 4 cut(s) 17, 268, 357, 716
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4V TGCA 2 cut(s) 357, 669
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 417, 666
HpyF3I CTNAG 3 cut(s) 245, 423, 546
Hsp92II CATG 4 cut(s) 157, 278, 346, 490
HspAI GCGC 1 cut(s) 420
Kzo9I GATC 3 cut(s) 28, 108, 234
LmnI GCTCC 2 cut(s) 657, 665
LpnPI CCDG 9 cut(s) 154, 401, 543, 583, 607, 635, 676, 687, 700
Lsp1109I GCAGC 2 cut(s) 272, 282
MaeI CTAG 5 cut(s) 120, 579, 588, 711, 727
MaeIII GTNAC 1 cut(s) 704
MalI GATC 3 cut(s) 30, 110, 236
MboI GATC 3 cut(s) 28, 108, 234
MboII GAAGA 4 cut(s) 290, 329, 576, 646
MhlI GDGCHC 3 cut(s) 359, 486, 662
MluCI AATT 2 cut(s) 56, 90
MmeI TCCRAC 2 cut(s) 249, 327
MnlI CCTC 7 cut(s) 313, 343, 418, 463, 513, 541, 648
MroXI GAANNNNTTC 1 cut(s) 574
MslI CAYNNNNRTG 1 cut(s) 489
MspA1I CMGCKG 2 cut(s) 263, 295
MspI CCGG 1 cut(s) 674
Mva1269I GAATGC 1 cut(s) 669
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 298, 417, 666
NdeII GATC 3 cut(s) 28, 108, 234
NlaIII CATG 4 cut(s) 157, 278, 346, 490
NlaIV GGNNCC 2 cut(s) 135, 160
NmeAIII GCCGAG 1 cut(s) 388
NspI RCATGY 1 cut(s) 346
OliI CACNNNNGTG 1 cut(s) 489
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 669
PdmI GAANNNNTTC 1 cut(s) 574
PkrI GCNGC 4 cut(s) 262, 294, 297, 300
Ple19I CGATCG 1 cut(s) 237
PsiI TTATAA 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 662
PspN4I GGNNCC 2 cut(s) 135, 160
PspPI GGNCC 2 cut(s) 133, 600
PvuI CGATCG 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 4 cut(s) 205, 368, 539, 592
RsaNI GTAC 4 cut(s) 204, 367, 538, 591
RseI CAYNNNNRTG 1 cut(s) 489
SacI GAGCTC 1 cut(s) 662
SatI GCNGC 4 cut(s) 261, 293, 296, 299
Sau3AI GATC 3 cut(s) 28, 108, 234
Sau96I GGNCC 2 cut(s) 133, 600
ScaI AGTACT 1 cut(s) 205
SduI GDGCHC 3 cut(s) 359, 486, 662
SetI ASST 7 cut(s) 103, 265, 405, 516, 547, 602, 662
SinI GGWCC 1 cut(s) 600
SmiMI CAYNNNNRTG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 2 cut(s) 56, 90
SsiI CCGC 5 cut(s) 293, 299, 376, 411, 645
SspMI CTAG 5 cut(s) 120, 579, 588, 711, 727
SstI GAGCTC 1 cut(s) 662
StyI CCWWGG 2 cut(s) 40, 72
TaaI ACNGT 1 cut(s) 704
TaqI TCGA 4 cut(s) 113, 233, 237, 315
TasI AATT 2 cut(s) 56, 90
TatI WGTACW 2 cut(s) 203, 366
TauI GCSGC 2 cut(s) 295, 301
TscAI CASTG 1 cut(s) 435
TseI GCWGC 2 cut(s) 260, 295
TspDTI ATGAA 2 cut(s) 263, 291
TspRI CASTG 1 cut(s) 435
VneI GTGCAC 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 600
XapI RAATTY 1 cut(s) 90
XceI RCATGY 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 5 cut(s) 120, 579, 588, 711, 727
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.