Prupe.1G446800_v2.0.a1

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015896
Physical Location & Seq
Forward (+)
37785980 .. 37786543
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G446800.1

Sequence Viewer

Length: 564 bp
ATGGCACCACCAAACAGAGAAAACCAAATGGGTTCATACTCTAACACCAGCATTGTCCAAAAGCCACCCAGGCTTTCCATGGGAAGCCTTCAAAGAACCATTTCTGACATTTCAGATGAACTAAGCAGCAGCTCCAAAGAAGCCATTCATGCCATGCAGCTTCCAACTATCTCTGAGGTTGAGGATGCCAAGTGTGAGTGCTGTGGCATGTGTGAGGAGTGCACCAACGAGTACATCAATCGCGTGCGAAACCAGTATTCGGGGAAGCTGATTTGTGGGTTGTGTGCAGAAGCTGTGAAGGAAGAGATGGAGAAGAATGGAGGCAAAAGAGAAGAGGCTGTCAATGAGCATTTCAGTGATTGTGTCAAGTTCAATAGGCTTGGCAGGGCATACCCTGTTTTGTACCAGGCGGAGGCCATCAAAGAGATCTTGAAAAAGAGTTCAAAAATTAGGGCCAAGTCTACAGGTCCTAGAGATAAGAGTGTTAAAAAGAATAATACCATCACAAGGAGCTCCAGCTGCATTCCTGCAATTAATCGAGAAGAACTGAGCCCTAAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

188

Amino Acids

20.82

Weight (kDa)

8.54

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25840
fragaria_vesca FvH4_2g35390
malus_domestica MD08G1112600.v1.1 MD15G1091900.v1.1
prunus_persica Prupe.1G446800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306521
rosa_laevigata RLG00000010790
rosa_multiflora Rmu_sc0002971.1_g000007
rosa_roxburghii Rroxscaffold_7G00161700
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462200 Rh6BG438500 Rh6CG476500 Rh6DG463200
rosa_wichuraiana Rw6G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 461
AccII CGCG 1 cut(s) 243
AciI CCGC 1 cut(s) 410
AfaI GTAC 2 cut(s) 233, 404
AfiI CCNNNNNNNGG 3 cut(s) 259, 412, 507
AgsI TTSAA 4 cut(s) 92, 373, 433, 444
AjnI CCWGG 2 cut(s) 68, 405
AluBI AGCT 6 cut(s) 132, 160, 268, 293, 513, 519
AluI AGCT 6 cut(s) 132, 160, 268, 293, 513, 519
Alw21I GWGCWC 2 cut(s) 224, 515
Alw44I GTGCAC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 2 cut(s) 414, 453
ApaLI GTGCAC 1 cut(s) 220
ApeKI GCWGC 4 cut(s) 126, 129, 157, 519
AseI ATTAAT 1 cut(s) 534
Asp700I GAANNNNTTC 2 cut(s) 100, 144
AspS9I GGNCC 2 cut(s) 453, 467
AvaII GGWCC 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 224
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 515, 554
Bbv12I GWGCWC 2 cut(s) 224, 515
BbvI GCAGC 4 cut(s) 138, 141, 169, 506
BccI CCATC 3 cut(s) 301, 425, 509
BciT130I CCWGG 2 cut(s) 70, 407
BfaI CTAG 1 cut(s) 471
BfmI CTRYAG 1 cut(s) 462
BglI GCCNNNNNGGC 1 cut(s) 70
BglII AGATCT 1 cut(s) 426
BisI GCNGC 4 cut(s) 127, 130, 158, 520
BlsI GCNGC 4 cut(s) 128, 131, 159, 521
Bme1390I CCNGG 2 cut(s) 70, 407
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 2 cut(s) 453, 467
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 70, 407
BmsI GCATC 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 499
BsaJI CCNNGG 2 cut(s) 68, 78
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 412, 507
Bse1I ACTGG 1 cut(s) 253
BseBI CCWGG 2 cut(s) 70, 407
BseDI CCNNGG 2 cut(s) 68, 78
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 3 cut(s) 259, 412, 507
BseMII CTCAG 2 cut(s) 165, 539
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 4 cut(s) 138, 141, 169, 506
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 2 cut(s) 416, 455
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 224, 515
BslI CCNNNNNNNGG 3 cut(s) 259, 412, 507
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 2 cut(s) 416, 455
Bsp1286I GDGCHC 3 cut(s) 224, 515, 554
Bsp143I GATC 1 cut(s) 426
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 1 cut(s) 410
BspANI GGCC 2 cut(s) 416, 455
BspCNI CTCAG 2 cut(s) 166, 540
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 68, 78
BssMI GATC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 70, 407
Bst6I CTCTTC 2 cut(s) 297, 327
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 122, 174, 548
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 1 cut(s) 429
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 3 cut(s) 70, 149, 519
BstNI CCWGG 2 cut(s) 70, 407
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 2 cut(s) 68, 405
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 4 cut(s) 138, 141, 169, 506
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 2 cut(s) 416, 455
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 245
CaiI CAGNNNCTG 1 cut(s) 293
Cfr13I GGNCC 2 cut(s) 453, 467
Csp6I GTAC 2 cut(s) 232, 403
CviAII CATG 4 cut(s) 79, 149, 154, 208
CviQI GTAC 2 cut(s) 232, 403
DdeI CTNAG 3 cut(s) 122, 174, 548
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 297, 327
EarI CTCTTC 2 cut(s) 297, 327
EciI GGCGGA 1 cut(s) 425
Ecl136II GAGCTC 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 515, 554
Eco47I GGWCC 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 513
EcoICRI GAGCTC 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 68, 405
EcoT14I CCWWGG 1 cut(s) 78
EcoT38I GRGCYC 2 cut(s) 515, 554
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 4 cut(s) 82, 152, 157, 211
FaiI YATR 6 cut(s) 37, 80, 150, 155, 209, 391
FatI CATG 4 cut(s) 78, 148, 153, 207
FblI GTMKAC 1 cut(s) 461
Fnu4HI GCNGC 4 cut(s) 127, 130, 158, 520
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 2 cut(s) 515, 554
Fsp4HI GCNGC 4 cut(s) 127, 130, 158, 520
FspBI CTAG 1 cut(s) 471
GluI GCNGC 4 cut(s) 127, 130, 158, 520
GsuI CTGGAG 1 cut(s) 499
HaeIII GGCC 2 cut(s) 416, 455
Hin1II CATG 4 cut(s) 82, 152, 157, 211
Hpy166II GTNNAC 2 cut(s) 222, 462
Hpy188I TCNGA 3 cut(s) 106, 115, 175
Hpy188III TCNNGA 2 cut(s) 430, 539
Hpy8I GTNNAC 2 cut(s) 222, 462
HpyAV CCTTC 2 cut(s) 98, 292
HpyCH4V TGCA 5 cut(s) 157, 222, 287, 522, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 149, 519
HpyF3I CTNAG 3 cut(s) 122, 174, 548
Hsp92II CATG 4 cut(s) 82, 152, 157, 211
Kzo9I GATC 1 cut(s) 426
LmnI GCTCC 3 cut(s) 137, 510, 518
Lsp1109I GCAGC 4 cut(s) 138, 141, 169, 506
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 471
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 4 cut(s) 314, 325, 344, 554
MflI RGATCY 1 cut(s) 426
MhlI GDGCHC 3 cut(s) 224, 515, 554
MluCI AATT 2 cut(s) 447, 531
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 6 cut(s) 169, 175, 208, 314, 328, 406
MroXI GAANNNNTTC 2 cut(s) 100, 144
MseI TTAA 2 cut(s) 486, 534
MslI CAYNNNNRTG 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 519
MspR9I CCNGG 2 cut(s) 70, 407
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 2 cut(s) 70, 407
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 70, 149, 519
NcoI CCATGG 1 cut(s) 78
NdeII GATC 1 cut(s) 426
NlaIII CATG 4 cut(s) 82, 152, 157, 211
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 211
PctI GAATGC 1 cut(s) 522
PdmI GAANNNNTTC 2 cut(s) 100, 144
PkrI GCNGC 4 cut(s) 128, 131, 159, 521
PpuMI RGGWCCY 1 cut(s) 467
PshBI ATTAAT 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 68, 405
PspGI CCWGG 2 cut(s) 68, 405
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 453, 467
PspPPI RGGWCCY 1 cut(s) 467
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 1 cut(s) 426
PvuII CAGCTG 1 cut(s) 519
RsaI GTAC 2 cut(s) 233, 404
RsaNI GTAC 2 cut(s) 232, 403
RseI CAYNNNNRTG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 515
SaqAI TTAA 2 cut(s) 486, 534
SatI GCNGC 4 cut(s) 127, 130, 158, 520
Sau3AI GATC 1 cut(s) 426
Sau96I GGNCC 2 cut(s) 453, 467
ScrFI CCNGG 2 cut(s) 70, 407
SduI GDGCHC 3 cut(s) 224, 515, 554
SetI ASST 8 cut(s) 134, 162, 180, 270, 295, 469, 515, 521
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 354
Sse9I AATT 2 cut(s) 447, 531
SsiI CCGC 1 cut(s) 410
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 515
StyD4I CCNGG 2 cut(s) 68, 405
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 1 cut(s) 538
TasI AATT 2 cut(s) 447, 531
TatI WGTACW 1 cut(s) 231
Tru1I TTAA 2 cut(s) 486, 534
Tru9I TTAA 2 cut(s) 486, 534
TscAI CASTG 1 cut(s) 361
TseI GCWGC 4 cut(s) 126, 129, 157, 519
TspDTI ATGAA 3 cut(s) 24, 132, 137
TspRI CASTG 1 cut(s) 361
VneI GTGCAC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 467
VspI ATTAAT 1 cut(s) 534
XceI RCATGY 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XmiI GTMKAC 1 cut(s) 461
XmnI GAANNNNTTC 2 cut(s) 100, 144
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.