MD15G1091900.v1.1

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015896
Physical Location & Seq
Forward (+)
6377735 .. 6378304
570 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1091900.v1.1.491

Sequence Viewer

Length: 570 bp
ATGCCACCAAACAGAGAAAACCAGATGGGTTCATACTCTAAGGCCAACACTGTCCACAAACCTCCAATGCTCTCAATGGGAAGTCTCCAAAGAACCATATCTGACATCTCAGCTGAACTAAGCAGCAGCAGCAGCAAAGAAGCCATTGATGATGGCATTCATCTTCCAACTATATCCGAGGTTGAGGATGCCAAGTGTGAGTGCTGTGGCATGTCCGAGGAGTGCACAAATGAGTACATAGATCGCGTGCGCAGCCAGTTTTCGGGGAAGTTAATTTGCGGGTTGTGTGCTGAGGCTGTGAAGGAAGAGATGGACAAGAATGGAGGCAAACGAGAAGAGGCTGTGAATGAGCATATGAGTGCTTGTGAAAAGTTCAATAGGCTTGGTAGGGCATACCCCGTTTTGTACCAAGCTGAGGCCATCAAAGAGATCTTCAAAAAGAGTTCAACGGTTAGGGCAAAATCCATAAGTCCTAGAGATAAGAGTGTTCGAAAGGGTAACGGGGGTATTGCAAGGAGCTCCAGTTGTATTCCCGCAATCAACAGAGAAGAACTCAGCCCTAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

190

Amino Acids

20.73

Weight (kDa)

7.53

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 61 - 150 1.1e-34 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25840
fragaria_vesca FvH4_2g35390
malus_domestica MD08G1112600.v1.1 MD15G1091900.v1.1
prunus_persica Prupe.1G446800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306521
rosa_laevigata RLG00000010790
rosa_multiflora Rmu_sc0002971.1_g000007
rosa_roxburghii Rroxscaffold_7G00161700
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462200 Rh6BG438500 Rh6CG476500 Rh6DG463200
rosa_wichuraiana Rw6G040290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 251
AccII CGCG 1 cut(s) 246
AciI CCGC 2 cut(s) 279, 534
AfaI GTAC 2 cut(s) 236, 407
AfiI CCNNNNNNNGG 2 cut(s) 262, 415
AgsI TTSAA 3 cut(s) 376, 436, 447
AluBI AGCT 3 cut(s) 113, 413, 519
AluI AGCT 3 cut(s) 113, 413, 519
Alw21I GWGCWC 2 cut(s) 227, 521
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 223
AoxI GGCC 2 cut(s) 42, 417
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 5 cut(s) 123, 126, 129, 132, 252
AspLEI GCGC 1 cut(s) 252
AsuII TTCGAA 1 cut(s) 490
BaeGI GKGCMC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 521
Bbv12I GWGCWC 2 cut(s) 227, 521
BbvCI CCTCAGC 2 cut(s) 291, 414
BbvI GCAGC 5 cut(s) 135, 138, 141, 144, 264
BccI CCATC 4 cut(s) 19, 146, 304, 428
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 474
BglII AGATCT 1 cut(s) 429
BisI GCNGC 5 cut(s) 124, 127, 130, 133, 253
BlsI GCNGC 5 cut(s) 125, 128, 131, 134, 254
BmsI GCATC 1 cut(s) 178
BplI GAGNNNNNCTC 2 cut(s) 537, 569
BpmI CTGGAG 1 cut(s) 505
Bpu10I CCTNAGC 2 cut(s) 291, 414
Bpu14I TTCGAA 1 cut(s) 490
BsaJI CCNNGG 2 cut(s) 177, 216
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 415
Bse1I ACTGG 2 cut(s) 256, 522
BseDI CCNNGG 2 cut(s) 177, 216
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 262, 415
BseMII CTCAG 4 cut(s) 123, 282, 405, 568
BseNI ACTGG 2 cut(s) 256, 522
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 5 cut(s) 135, 138, 141, 144, 264
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 2 cut(s) 44, 419
BsiHKAI GWGCWC 2 cut(s) 227, 521
BslI CCNNNNNNNGG 2 cut(s) 262, 415
BsmAI GTCTC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 2 cut(s) 44, 419
Bsp119I TTCGAA 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 227, 521
Bsp143I GATC 2 cut(s) 241, 429
BspACI CCGC 2 cut(s) 279, 534
BspANI GGCC 2 cut(s) 44, 419
BspCNI CTCAG 4 cut(s) 122, 283, 406, 567
BspFNI CGCG 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 490
BsrI ACTGG 2 cut(s) 256, 522
BssECI CCNNGG 2 cut(s) 177, 216
BssMI GATC 2 cut(s) 241, 429
Bst4CI ACNGT 2 cut(s) 52, 451
Bst6I CTCTTC 2 cut(s) 300, 330
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 6 cut(s) 39, 109, 119, 291, 414, 554
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 2 cut(s) 244, 432
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 241, 429
BstMWI GCNNNNNNNGC 3 cut(s) 129, 132, 252
BstNSI RCATGY 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 5 cut(s) 135, 138, 141, 144, 264
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 2 cut(s) 44, 419
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 235, 406
CviAII CATG 1 cut(s) 211
CviQI GTAC 2 cut(s) 235, 406
DdeI CTNAG 6 cut(s) 39, 109, 119, 291, 414, 554
DpnI GATC 2 cut(s) 243, 431
DpnII GATC 2 cut(s) 241, 429
Eam1104I CTCTTC 2 cut(s) 300, 330
EarI CTCTTC 2 cut(s) 300, 330
Ecl136II GAGCTC 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 521
Eco53kI GAGCTC 1 cut(s) 519
EcoICRI GAGCTC 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 521
FaeI CATG 1 cut(s) 214
FaiI YATR 9 cut(s) 34, 98, 173, 212, 239, 354, 356, 394, 467
FatI CATG 1 cut(s) 210
FauI CCCGC 2 cut(s) 272, 541
FauNDI CATATG 1 cut(s) 354
Fnu4HI GCNGC 5 cut(s) 124, 127, 130, 133, 253
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 5 cut(s) 124, 127, 130, 133, 253
FspBI CTAG 1 cut(s) 474
FspI TGCGCA 1 cut(s) 251
GlaI GCGC 1 cut(s) 251
GluI GCNGC 5 cut(s) 124, 127, 130, 133, 253
GsuI CTGGAG 1 cut(s) 505
HaeIII GGCC 2 cut(s) 44, 419
HhaI GCGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 55, 225
Hpy188I TCNGA 3 cut(s) 103, 178, 217
Hpy8I GTNNAC 2 cut(s) 55, 225
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 52, 451
HpyCH4V TGCA 2 cut(s) 225, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 129, 132, 252
HpyF3I CTNAG 6 cut(s) 39, 109, 119, 291, 414, 554
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 241, 429
LmnI GCTCC 2 cut(s) 516, 524
LpnPI CCDG 3 cut(s) 35, 269, 535
Lsp1109I GCAGC 5 cut(s) 135, 138, 141, 144, 264
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 497
MalI GATC 2 cut(s) 243, 431
MboI GATC 2 cut(s) 241, 429
MboII GAAGA 5 cut(s) 155, 317, 347, 424, 560
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 227, 521
MluCI AATT 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 8 cut(s) 72, 172, 178, 211, 286, 317, 331, 409
MseI TTAA 2 cut(s) 272, 568
MslI CAYNNNNRTG 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 156
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 129, 132, 252
NdeI CATATG 1 cut(s) 354
NdeII GATC 2 cut(s) 241, 429
NlaIII CATG 1 cut(s) 214
NsbI TGCGCA 1 cut(s) 251
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 490
PctI GAATGC 1 cut(s) 156
PkrI GCNGC 5 cut(s) 125, 128, 131, 134, 254
Psp124BI GAGCTC 1 cut(s) 521
PsuI RGATCY 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 2 cut(s) 236, 407
RsaNI GTAC 2 cut(s) 235, 406
RseI CAYNNNNRTG 1 cut(s) 357
SacI GAGCTC 1 cut(s) 521
SaqAI TTAA 2 cut(s) 272, 568
SatI GCNGC 5 cut(s) 124, 127, 130, 133, 253
Sau3AI GATC 2 cut(s) 241, 429
SduI GDGCHC 2 cut(s) 227, 521
SetI ASST 5 cut(s) 64, 115, 183, 415, 521
SfaNI GCATC 1 cut(s) 178
SfuI TTCGAA 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 1 cut(s) 273
SsiI CCGC 2 cut(s) 279, 534
SspMI CTAG 1 cut(s) 474
SstI GAGCTC 1 cut(s) 521
TaaI ACNGT 2 cut(s) 52, 451
TaqI TCGA 1 cut(s) 490
TasI AATT 1 cut(s) 273
TatI WGTACW 1 cut(s) 234
Tru1I TTAA 2 cut(s) 272, 568
Tru9I TTAA 2 cut(s) 272, 568
TscAI CASTG 1 cut(s) 55
TseI GCWGC 5 cut(s) 123, 126, 129, 132, 252
TspDTI ATGAA 2 cut(s) 21, 149
TspRI CASTG 1 cut(s) 55
VneI GTGCAC 1 cut(s) 223
XceI RCATGY 1 cut(s) 214
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.