Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016674

Physical Location & Seq

Genomic Coordinates Reverse (-)

26320995 .. 26322876

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCAAAAATAGCGTTTGGAAGCACCAGTGAGGCTGCAAAGCCAGAGGTCTGGAGGGCGCTTATCGTCGAGTTTGTCACCACCTTTCTCTTCATCTTTGCTGGTGTTGGATCAGCCATGGCTACTGATAAGCTAGGAGCAGATACAACTGTGGCATTGTTTTTCATAGCTATCACGCATGCCCTAGTCGTGGCGGTGATGATATCCGCCGGCCACATTTCCGGTGGTCATCTTAACCCCGCAGTCACTCTCGGCCTCCTCGCCGGCGGTCACATCACCCTCTTCCGATCCGTGCTTTATTGGATCGATCAGTTGTTAGCAGCTGCCGCATCTTGTTACCTTCTAAAGTATCTTACCGGTGGATTGACTACTCCAATTCATTCACTTGCAAGTGGAGTTGGCTTCTCCCAAGGTGTGATATGGGAGATCATCTTGACATTCTCCTTGCTATTCACGGTCTACGCTACGATGGTGGACCCTAAGAAAGGATCTCTTGATGGGCTGGGCCCAACTCTCACTGGGTTTGTAGTGGGCGCCAACATCCTAGCCGGCGGCGCCTTCTCAGGGGCTTCAATGAACCCGGCAAGATCTTTTGGGCCTGCTCTGGTGAGCTGGGACTGGACCGATCATTGGGTCTACTGGGTTGGGCCTCTCATCGGTGGTGGGCTCGCTGGCTTCATCTATGAGAGTTTCTTCATCGAGAGGCCACGTAGTTACCAACCCATCCCCGTAGCGGATGATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

249

Amino Acids

26.14

Weight (kDa)

5.79

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	12 - 228	3.2e-69	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25810
fragaria_vesca	FvH4_2g35700
malus_domestica	MD08G1115300.v1.1 MD15G1094400.v1.1
prunus_persica	Prupe.1G449500_v2.0.a1
pyrus_communis	pycom15g08720
rosa_chinensis	RchiOBHm_Chr6g0306101
rosa_laevigata	RLG00000010825
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG459100 Rh6BG441800 Rh6CG473600 Rh6DG459800
rosa_wichuraiana	Rw6G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	533, 554
AccI	GTMKAC	2 cut(s)	459, 636
AciI	CCGC	7 cut(s)	194, 207, 240, 267, 327, 552, 734
AclWI	GGATC	4 cut(s)	118, 282, 311, 496
AcoI	YGGCCR	1 cut(s)	211
AcyI	GRCGYC	2 cut(s)	534, 555
AfiI	CCNNNNNNNGG	6 cut(s)	190, 485, 564, 630, 656, 733
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	1 cut(s)	573
AluBI	AGCT	4 cut(s)	133, 170, 323, 612
AluI	AGCT	4 cut(s)	133, 170, 323, 612
AlwI	GGATC	4 cut(s)	118, 282, 311, 496
AoxI	GGCC	6 cut(s)	211, 253, 505, 596, 647, 704
ApaI	GGGCCC	1 cut(s)	509
ApeKI	GCWGC	3 cut(s)	35, 320, 323
AsiGI	ACCGGT	1 cut(s)	356
AspLEI	GCGC	3 cut(s)	61, 536, 557
AspS9I	GGNCC	6 cut(s)	475, 505, 506, 596, 621, 647
AsuC2I	CCSGG	1 cut(s)	581
AsuHPI	GGTGA	4 cut(s)	70, 208, 268, 619
AvaII	GGWCC	2 cut(s)	475, 621
BaeGI	GKGCMC	1 cut(s)	509
BaeI	ACNNNNGTAYC	2 cut(s)	135, 168
BanI	GGYRCC	2 cut(s)	533, 554
BanII	GRGCYC	2 cut(s)	509, 669
BbvI	GCAGC	3 cut(s)	22, 310, 332
BccI	CCATC	3 cut(s)	463, 491, 731
BcnI	CCSGG	1 cut(s)	581
BfaI	CTAG	3 cut(s)	134, 185, 545
BfoI	RGCGCY	3 cut(s)	62, 537, 558
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	5 cut(s)	36, 321, 324, 327, 553
BlsI	GCNGC	5 cut(s)	37, 322, 325, 328, 554
Bme1390I	CCNGG	1 cut(s)	581
Bme18I	GGWCC	2 cut(s)	475, 621
BmgT120I	GGNCC	6 cut(s)	475, 505, 506, 596, 621, 647
BmiI	GGNNCC	4 cut(s)	477, 507, 535, 556
BmrFI	CCNGG	1 cut(s)	581
BmrI	ACTGGG	2 cut(s)	528, 649
BmsI	GCATC	2 cut(s)	338, 730
BmuI	ACTGGG	2 cut(s)	528, 649
BpmI	CTGGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	581
Bsa29I	ATCGAT	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	710
BsaHI	GRCGYC	2 cut(s)	534, 555
BsaJI	CCNNGG	2 cut(s)	117, 409
BsaWI	WCCGGW	2 cut(s)	221, 356
Bsc4I	CCNNNNNNNGG	6 cut(s)	190, 485, 564, 630, 656, 733
Bse118I	RCCGGY	4 cut(s)	209, 263, 356, 548
Bse1I	ACTGG	4 cut(s)	27, 523, 623, 644
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	117, 409
BseGI	GGATG	3 cut(s)	540, 723, 742
BseLI	CCNNNNNNNGG	6 cut(s)	190, 485, 564, 630, 656, 733
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	4 cut(s)	27, 523, 623, 644
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	3 cut(s)	22, 310, 332
BseYI	CCCAGC	2 cut(s)	502, 612
BshFI	GGCC	6 cut(s)	213, 255, 507, 598, 649, 706
BshNI	GGYRCC	2 cut(s)	533, 554
BshTI	ACCGGT	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	306
BsiSI	CCGG	6 cut(s)	210, 222, 264, 357, 549, 581
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	6 cut(s)	190, 485, 564, 630, 656, 733
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	6 cut(s)	213, 255, 507, 598, 649, 706
Bsp120I	GGGCCC	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	509, 669
Bsp143I	GATC	8 cut(s)	110, 287, 303, 307, 426, 488, 587, 625
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	7 cut(s)	194, 207, 240, 267, 327, 552, 734
BspANI	GGCC	6 cut(s)	213, 255, 507, 598, 649, 706
BspCNI	CTCAG	1 cut(s)	575
BspDI	ATCGAT	1 cut(s)	306
BspLI	GGNNCC	4 cut(s)	477, 507, 535, 556
BspPI	GGATC	4 cut(s)	118, 282, 311, 496
BspT107I	GGYRCC	2 cut(s)	533, 554
BsrFI	RCCGGY	4 cut(s)	209, 263, 356, 548
BsrI	ACTGG	4 cut(s)	27, 523, 623, 644
BssAI	RCCGGY	4 cut(s)	209, 263, 356, 548
BssECI	CCNNGG	2 cut(s)	117, 409
BssMI	GATC	8 cut(s)	110, 287, 303, 307, 426, 488, 587, 625
BssNI	GRCGYC	2 cut(s)	534, 555
BssT1I	CCWWGG	2 cut(s)	117, 409
Bst4CI	ACNGT	2 cut(s)	151, 457
Bst6I	CTCTTC	2 cut(s)	95, 287
BstACI	GRCGYC	2 cut(s)	534, 555
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	7 cut(s)	180, 211, 265, 550, 600, 669, 673
BstDEI	CTNAG	2 cut(s)	480, 562
BstDSI	CCRYGG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	540, 723, 742
BstH2I	RGCGCY	3 cut(s)	62, 537, 558
BstHHI	GCGC	3 cut(s)	61, 536, 557
BstKTI	GATC	8 cut(s)	113, 290, 306, 310, 429, 491, 590, 628
BstMBI	GATC	8 cut(s)	110, 287, 303, 307, 426, 488, 587, 625
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 326, 554, 740
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	579
BstSLI	GKGCMC	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	22, 310, 332
BstX2I	RGATCY	2 cut(s)	488, 587
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	2 cut(s)	488, 587
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	6 cut(s)	213, 255, 507, 598, 649, 706
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	540, 723, 742
BtsIMutI	CAGTG	2 cut(s)	34, 516
Cac8I	GCNNGC	7 cut(s)	180, 211, 265, 550, 600, 669, 673
CfoI	GCGC	3 cut(s)	61, 536, 557
Cfr10I	RCCGGY	4 cut(s)	209, 263, 356, 548
Cfr13I	GGNCC	6 cut(s)	475, 505, 506, 596, 621, 647
ClaI	ATCGAT	1 cut(s)	306
CspAI	ACCGGT	1 cut(s)	356
CviAII	CATG	2 cut(s)	118, 179
DdeI	CTNAG	2 cut(s)	480, 562
DinI	GGCGCC	2 cut(s)	535, 556
DpnI	GATC	8 cut(s)	112, 289, 305, 309, 428, 490, 589, 627
DpnII	GATC	8 cut(s)	110, 287, 303, 307, 426, 488, 587, 625
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	95, 287
EarI	CTCTTC	2 cut(s)	95, 287
EciI	GGCGGA	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	117, 409
Eco24I	GRGCYC	2 cut(s)	509, 669
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	475, 621
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoRV	GATATC	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	117, 409
EcoT38I	GRGCYC	2 cut(s)	509, 669
EgeI	GGCGCC	2 cut(s)	535, 556
EheI	GGCGCC	2 cut(s)	535, 556
ErhI	CCWWGG	2 cut(s)	117, 409
FaeI	CATG	2 cut(s)	121, 182
FaiI	YATR	5 cut(s)	119, 167, 180, 421, 684
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	2 cut(s)	117, 178
FauI	CCCGC	1 cut(s)	247
FblI	GTMKAC	2 cut(s)	459, 636
Fnu4HI	GCNGC	5 cut(s)	36, 321, 324, 327, 553
FokI	GGATG	2 cut(s)	527, 710
FriOI	GRGCYC	2 cut(s)	509, 669
Fsp4HI	GCNGC	5 cut(s)	36, 321, 324, 327, 553
FspBI	CTAG	3 cut(s)	134, 185, 545
GlaI	GCGC	3 cut(s)	60, 535, 556
GluI	GCNGC	5 cut(s)	36, 321, 324, 327, 553
GsaI	CCCAGC	2 cut(s)	506, 616
GsuI	CTGGAG	1 cut(s)	73
HaeII	RGCGCY	3 cut(s)	62, 537, 558
HaeIII	GGCC	6 cut(s)	213, 255, 507, 598, 649, 706
HapII	CCGG	6 cut(s)	210, 222, 264, 357, 549, 581
HhaI	GCGC	3 cut(s)	61, 536, 557
Hin1I	GRCGYC	2 cut(s)	534, 555
Hin1II	CATG	2 cut(s)	121, 182
Hin6I	GCGC	3 cut(s)	59, 534, 555
HinP1I	GCGC	3 cut(s)	59, 534, 555
HpaII	CCGG	6 cut(s)	210, 222, 264, 357, 549, 581
HphI	GGTGA	4 cut(s)	70, 208, 268, 619
Hpy166II	GTNNAC	3 cut(s)	460, 475, 637
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	4 cut(s)	52, 433, 494, 700
Hpy8I	GTNNAC	3 cut(s)	460, 475, 637
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	350, 568
HpyCH4III	ACNGT	2 cut(s)	151, 457
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	2 cut(s)	38, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 326, 554, 740
HpyF3I	CTNAG	2 cut(s)	480, 562
HpySE526I	ACGT	1 cut(s)	709
Hsp92I	GRCGYC	2 cut(s)	534, 555
Hsp92II	CATG	2 cut(s)	121, 182
HspAI	GCGC	3 cut(s)	59, 534, 555
KasI	GGCGCC	2 cut(s)	533, 554
KroI	GCCGGC	3 cut(s)	209, 263, 548
KroNI	GCCGGC	3 cut(s)	211, 265, 550
Kzo9I	GATC	8 cut(s)	110, 287, 303, 307, 426, 488, 587, 625
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	3 cut(s)	22, 310, 332
LweI	GCATC	2 cut(s)	338, 730
MaeI	CTAG	3 cut(s)	134, 185, 545
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	5 cut(s)	76, 244, 269, 335, 713
MalI	GATC	8 cut(s)	112, 289, 305, 309, 428, 490, 589, 627
MboI	GATC	8 cut(s)	110, 287, 303, 307, 426, 488, 587, 625
MboII	GAAGA	3 cut(s)	82, 274, 685
MflI	RGATCY	2 cut(s)	488, 587
MhlI	GDGCHC	2 cut(s)	509, 669
MluCI	AATT	1 cut(s)	375
Mly113I	GGCGCC	2 cut(s)	534, 555
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	25, 40, 48, 266, 269, 290, 660, 696
MreI	CGCCGGCG	1 cut(s)	263
MroNI	GCCGGC	3 cut(s)	209, 263, 548
MseI	TTAA	2 cut(s)	234, 745
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	6 cut(s)	210, 222, 264, 357, 549, 581
MspR9I	CCNGG	1 cut(s)	581
MwoI	GCNNNNNNNGC	4 cut(s)	11, 326, 554, 740
NaeI	GCCGGC	3 cut(s)	211, 265, 550
NarI	GGCGCC	2 cut(s)	534, 555
NciI	CCSGG	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	8 cut(s)	110, 287, 303, 307, 426, 488, 587, 625
NgoMIV	GCCGGC	3 cut(s)	209, 263, 548
NlaIII	CATG	2 cut(s)	121, 182
NlaIV	GGNNCC	4 cut(s)	477, 507, 535, 556
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	3 cut(s)	76, 244, 269
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PdiI	GCCGGC	3 cut(s)	211, 265, 550
PinAI	ACCGGT	1 cut(s)	356
PkrI	GCNGC	5 cut(s)	37, 322, 325, 328, 554
PluTI	GGCGCC	2 cut(s)	537, 558
Ppu21I	YACGTR	1 cut(s)	710
PspFI	CCCAGC	2 cut(s)	502, 612
PspN4I	GGNNCC	4 cut(s)	477, 507, 535, 556
PspOMI	GGGCCC	1 cut(s)	505
PspPI	GGNCC	6 cut(s)	475, 505, 506, 596, 621, 647
PsuI	RGATCY	2 cut(s)	488, 587
PvuII	CAGCTG	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	234, 745
SatI	GCNGC	5 cut(s)	36, 321, 324, 327, 553
Sau3AI	GATC	8 cut(s)	110, 287, 303, 307, 426, 488, 587, 625
Sau96I	GGNCC	6 cut(s)	475, 505, 506, 596, 621, 647
ScrFI	CCNGG	1 cut(s)	581
SduI	GDGCHC	2 cut(s)	509, 669
SetI	ASST	9 cut(s)	51, 86, 135, 172, 325, 342, 415, 614, 712
SfaNI	GCATC	2 cut(s)	338, 730
SfoI	GGCGCC	2 cut(s)	535, 556
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	2 cut(s)	475, 621
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	7 cut(s)	194, 207, 240, 267, 327, 552, 734
SspDI	GGCGCC	2 cut(s)	533, 554
SspMI	CTAG	3 cut(s)	134, 185, 545
StyD4I	CCNGG	1 cut(s)	579
StyI	CCWWGG	2 cut(s)	117, 409
TaaI	ACNGT	2 cut(s)	151, 457
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	3 cut(s)	69, 306, 699
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	1 cut(s)	375
TauI	GCSGC	2 cut(s)	329, 555
Tru1I	TTAA	2 cut(s)	234, 745
Tru9I	TTAA	2 cut(s)	234, 745
TscAI	CASTG	2 cut(s)	34, 523
TseFI	GTSAC	3 cut(s)	76, 244, 269
TseI	GCWGC	3 cut(s)	35, 320, 323
Tsp45I	GTSAC	3 cut(s)	76, 244, 269
TspDTI	ATGAA	6 cut(s)	82, 154, 368, 590, 667, 685
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	2 cut(s)	34, 523
VpaK11BI	GGWCC	2 cut(s)	475, 621
XagI	CCTNNNNNAGG	1 cut(s)	483
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmiI	GTMKAC	2 cut(s)	459, 636
XspI	CTAG	3 cut(s)	134, 185, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.