Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016674

Physical Location & Seq

Genomic Coordinates Reverse (-)

65952193 .. 65953432

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG441800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGAAAAATAGCGTTCGGAAGCACCAGTGAGGCTGCAAAGCCGGAAGTCTGGAGGGCGCTTATCGTCGAGTTTATCACCACCTTCCTGTTCATCTTCGCTGGTGTTGGATCAGCCATGGCTACTGATAAGCTAGGAGCAGATACAACTGTGGCATTGTTTTTCGTAGCTATCACGCATGCCCTAGTCGTGGCCGTGATGATATCCGCCGGCCACATTTCCGGTGGTCATCTTAACCCCGCTGTCACTCTCGGCCTCCTCGCCGGTGGTCACATTACCCTCTTCCGATCTGTGCTTTATTGGATTGATCAGTTGTTAGCAGCTGCCGCATCTTGTTACCTTCTAAAGTACCTTACCGGAGGATTGACTACTCCAATTCATTCACTTGCAAGTGGAGTCGGCTTCTTCCAAGGTGTGATATGGGAGATCATCTTGACATTCTCCTTGCTTTTCACAGTCTACGCTACAATTGTGGATCCCAAGAAAGGATCTCTTGATGGGCTGGGCCCAACTCTCACTGGGTTTGTAGTGGGTGCCAACATCCTAGCTGGCGGGGCCTTCTCAGGGGCTTCAATGAACCCAGCAAGGTCTTTTGGGCCTGCTCTGGTGAGCTGGGACTGGACCGATCACTGGGTCTATTGGGTTGGGCCTCTCATCGGTGGTGGCCTCGCTGGCTTCATCTATGAAAATTTCTTCATTGAGAGACCACGTAATTACCAACCCATCCCTGCATATCAGGAAGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

249

Amino Acids

26.44

Weight (kDa)

5.8

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	12 - 228	3.4e-69	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25810
fragaria_vesca	FvH4_2g35700
malus_domestica	MD08G1115300.v1.1 MD15G1094400.v1.1
prunus_persica	Prupe.1G449500_v2.0.a1
pyrus_communis	pycom15g08720
rosa_chinensis	RchiOBHm_Chr6g0306101
rosa_laevigata	RLG00000010825
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG459100 Rh6BG441800 Rh6CG473600 Rh6DG459800
rosa_wichuraiana	Rw6G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	4 cut(s)	207, 240, 327, 552
AclWI	GGATC	4 cut(s)	118, 470, 483, 496
AcoI	YGGCCR	2 cut(s)	192, 211
AcsI	RAATTY	1 cut(s)	688
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	5 cut(s)	190, 485, 564, 630, 656
AgsI	TTSAA	1 cut(s)	573
AluBI	AGCT	5 cut(s)	133, 170, 323, 548, 612
AluI	AGCT	5 cut(s)	133, 170, 323, 548, 612
Alw26I	GTCTC	1 cut(s)	697
AlwI	GGATC	4 cut(s)	118, 470, 483, 496
AoxI	GGCC	8 cut(s)	192, 211, 253, 505, 555, 596, 647, 664
ApaI	GGGCCC	1 cut(s)	509
ApeKI	GCWGC	3 cut(s)	35, 320, 323
ApoI	RAATTY	1 cut(s)	688
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	6 cut(s)	505, 506, 555, 596, 621, 647
AsuHPI	GGTGA	2 cut(s)	70, 619
AvaII	GGWCC	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	509
BaeI	ACNNNNGTAYC	2 cut(s)	135, 168
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	22, 310, 332
BccI	CCATC	2 cut(s)	491, 731
BceAI	ACGGC	1 cut(s)	179
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	3 cut(s)	134, 185, 545
BfoI	RGCGCY	1 cut(s)	62
BglI	GCCNNNNNGGC	1 cut(s)	672
BisI	GCNGC	4 cut(s)	36, 321, 324, 327
BlsI	GCNGC	4 cut(s)	37, 322, 325, 328
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	6 cut(s)	505, 506, 555, 596, 621, 647
BmiI	GGNNCC	4 cut(s)	477, 507, 535, 556
BmrI	ACTGGG	2 cut(s)	528, 640
BmsI	GCATC	1 cut(s)	338
BmuI	ACTGGG	2 cut(s)	528, 640
BpmI	CTGGAG	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	697
BsaJI	CCNNGG	2 cut(s)	117, 409
BsaWI	WCCGGW	2 cut(s)	221, 356
Bsc4I	CCNNNNNNNGG	5 cut(s)	190, 485, 564, 630, 656
Bse118I	RCCGGY	2 cut(s)	209, 263
Bse1I	ACTGG	4 cut(s)	27, 523, 623, 635
BseDI	CCNNGG	2 cut(s)	117, 409
BseGI	GGATG	2 cut(s)	540, 723
BseLI	CCNNNNNNNGG	5 cut(s)	190, 485, 564, 630, 656
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	4 cut(s)	27, 523, 623, 635
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	3 cut(s)	22, 310, 332
BseYI	CCCAGC	3 cut(s)	502, 580, 612
BshFI	GGCC	8 cut(s)	194, 213, 255, 507, 557, 598, 649, 666
BshNI	GGYRCC	1 cut(s)	533
BsiSI	CCGG	5 cut(s)	44, 210, 222, 264, 357
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	5 cut(s)	190, 485, 564, 630, 656
BsmAI	GTCTC	1 cut(s)	697
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	8 cut(s)	194, 213, 255, 507, 557, 598, 649, 666
Bso31I	GGTCTC	1 cut(s)	697
Bsp120I	GGGCCC	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	7 cut(s)	110, 287, 307, 426, 475, 488, 625
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	4 cut(s)	207, 240, 327, 552
BspANI	GGCC	8 cut(s)	194, 213, 255, 507, 557, 598, 649, 666
BspCNI	CTCAG	1 cut(s)	575
BspLI	GGNNCC	4 cut(s)	477, 507, 535, 556
BspPI	GGATC	4 cut(s)	118, 470, 483, 496
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	697
BsrFI	RCCGGY	2 cut(s)	209, 263
BsrI	ACTGG	4 cut(s)	27, 523, 623, 635
BssAI	RCCGGY	2 cut(s)	209, 263
BssECI	CCNNGG	2 cut(s)	117, 409
BssMI	GATC	7 cut(s)	110, 287, 307, 426, 475, 488, 625
BssT1I	CCWWGG	2 cut(s)	117, 409
Bst4CI	ACNGT	2 cut(s)	151, 457
Bst6I	CTCTTC	2 cut(s)	287, 735
BstBAI	YACGTR	1 cut(s)	710
BstC8I	GCNNGC	5 cut(s)	180, 211, 550, 600, 673
BstDEI	CTNAG	1 cut(s)	562
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	540, 723
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	7 cut(s)	113, 290, 310, 429, 478, 491, 628
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	7 cut(s)	110, 287, 307, 426, 475, 488, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 554, 672
BstNSI	RCATGY	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	22, 310, 332
BstX2I	RGATCY	2 cut(s)	475, 488
BstYI	RGATCY	2 cut(s)	475, 488
BsuRI	GGCC	8 cut(s)	194, 213, 255, 507, 557, 598, 649, 666
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	540, 723
BtsIMutI	CAGTG	3 cut(s)	34, 516, 628
Cac8I	GCNNGC	5 cut(s)	180, 211, 550, 600, 673
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	2 cut(s)	209, 263
Cfr13I	GGNCC	6 cut(s)	505, 506, 555, 596, 621, 647
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	118, 179
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	562
DpnI	GATC	7 cut(s)	112, 289, 309, 428, 477, 490, 627
DpnII	GATC	7 cut(s)	110, 287, 307, 426, 475, 488, 625
EaeI	YGGCCR	2 cut(s)	192, 211
Eam1104I	CTCTTC	2 cut(s)	287, 735
EarI	CTCTTC	2 cut(s)	287, 735
EciI	GGCGGA	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	117, 409
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	1 cut(s)	697
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	555
EcoRV	GATATC	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	117, 409
EcoT38I	GRGCYC	1 cut(s)	509
ErhI	CCWWGG	2 cut(s)	117, 409
FaeI	CATG	2 cut(s)	121, 182
FaiI	YATR	5 cut(s)	119, 180, 421, 684, 733
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	2 cut(s)	117, 178
FauI	CCCGC	2 cut(s)	247, 545
FbaI	TGATCA	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	36, 321, 324, 327
FokI	GGATG	2 cut(s)	527, 710
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	4 cut(s)	36, 321, 324, 327
FspBI	CTAG	3 cut(s)	134, 185, 545
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	4 cut(s)	36, 321, 324, 327
GsaI	CCCAGC	3 cut(s)	506, 584, 616
GsuI	CTGGAG	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	8 cut(s)	194, 213, 255, 507, 557, 598, 649, 666
HapII	CCGG	5 cut(s)	44, 210, 222, 264, 357
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	121, 182
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	1 cut(s)	396
HpaII	CCGG	5 cut(s)	44, 210, 222, 264, 357
HphI	GGTGA	2 cut(s)	70, 619
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	20, 287
Hpy188III	TCNNGA	4 cut(s)	52, 433, 494, 737
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	94, 350, 568
HpyCH4III	ACNGT	2 cut(s)	151, 457
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	3 cut(s)	38, 389, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 554, 672
HpyF3I	CTNAG	1 cut(s)	562
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	2 cut(s)	121, 182
HspAI	GCGC	1 cut(s)	59
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	7 cut(s)	110, 287, 307, 426, 475, 488, 625
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	3 cut(s)	22, 310, 332
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	3 cut(s)	134, 185, 545
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	3 cut(s)	244, 269, 335
MalI	GATC	7 cut(s)	112, 289, 309, 428, 477, 490, 627
MboI	GATC	7 cut(s)	110, 287, 307, 426, 475, 488, 625
MboII	GAAGA	4 cut(s)	88, 274, 397, 685
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	2 cut(s)	475, 488
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	4 cut(s)	375, 468, 688, 712
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	25, 48, 266, 269, 290, 353, 660, 677, 736
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	2 cut(s)	234, 748
MspA1I	CMGCKG	2 cut(s)	242, 323
MspI	CCGG	5 cut(s)	44, 210, 222, 264, 357
MunI	CAATTG	1 cut(s)	468
MwoI	GCNNNNNNNGC	3 cut(s)	326, 554, 672
NaeI	GCCGGC	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	7 cut(s)	110, 287, 307, 426, 475, 488, 625
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	121, 182
NlaIV	GGNNCC	4 cut(s)	477, 507, 535, 556
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	244, 269
NspI	RCATGY	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	37, 322, 325, 328
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	710
PspFI	CCCAGC	3 cut(s)	502, 580, 612
PspN4I	GGNNCC	4 cut(s)	477, 507, 535, 556
PspOMI	GGGCCC	1 cut(s)	505
PspPI	GGNCC	6 cut(s)	505, 506, 555, 596, 621, 647
PsuI	RGATCY	2 cut(s)	475, 488
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	234, 748
SatI	GCNGC	4 cut(s)	36, 321, 324, 327
Sau3AI	GATC	7 cut(s)	110, 287, 307, 426, 475, 488, 625
Sau96I	GGNCC	6 cut(s)	505, 506, 555, 596, 621, 647
SchI	GAGTC	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	1 cut(s)	338
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	621
SphI	GCATGC	1 cut(s)	182
Sse9I	AATT	4 cut(s)	375, 468, 688, 712
SsiI	CCGC	4 cut(s)	207, 240, 327, 552
SspMI	CTAG	3 cut(s)	134, 185, 545
StyI	CCWWGG	2 cut(s)	117, 409
TaaI	ACNGT	2 cut(s)	151, 457
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	1 cut(s)	69
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	4 cut(s)	375, 468, 688, 712
TauI	GCSGC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	234, 748
Tru9I	TTAA	2 cut(s)	234, 748
TscAI	CASTG	3 cut(s)	34, 523, 635
TseFI	GTSAC	2 cut(s)	244, 269
TseI	GCWGC	3 cut(s)	35, 320, 323
Tsp45I	GTSAC	2 cut(s)	244, 269
TspDTI	ATGAA	6 cut(s)	82, 368, 590, 667, 685, 699
TspRI	CASTG	3 cut(s)	34, 523, 635
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	1 cut(s)	688
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	459
XspI	CTAG	3 cut(s)	134, 185, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.