Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016674

Physical Location & Seq

Genomic Coordinates Reverse (-)

37925758 .. 37927117

Gene Structure 1360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G449500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGAAAATAGCCTTGGGAACCACCAGTGAGGCTGCCCTGCCAGAATTATGGAGAGCCCTCGTGGTTGAATTCATCACCACCTTCCTCTTTGTCTTTGCTGGTGTTGGATCAGCCATGGCTACTGATAAGCTAGAAGCAGATGCACTAGTCGCGTTGTTTGCCACAGCTGTGACACATGCACTAGTTGTGGCCGTCATGATATCCGCCGGCCACATTTCCGGCGGTCACCTTAACCCGGCTGTCACCCTCGGCCTCCTCGTTGGCGGTCACATTACCGTCTTCCGATCCCTACTCTATTGGATCGATCAATTGTTAGCAGCCGCCGCAGCTTGTTACCTGCTAGAATATCTTACTGGTGGATTGACTACACCAATTCATTCGCTTGCAAGTGGGGTGGGATACTTACAAGGTGTGATATGGGAGATTATCCTCACATTCTCCTTGCTCTTCACAGTCTATGCTACAATTGTGGACCCCAAGAAAGGAGCTCTTAACGGTTTGGGCCCCACACTCACTGGGTTTGTAGTGGGAGCCAACATCCTAGCCGGTGGGGCCTTCTCAGGGGCTTCAATGAACCCAGCAAGGTCCTTTGGTCCGGCTTTGGTGAGCTGGAACTGGACTGACCACTGGGTTTACTGGGTTGGGCCCCTCATTGGTGGTGGGCTTGCTGGGTGCATCTATGAAAACTTCTTCATTTTCAGACCAACAACTCATCTCCCCATTCCCACTGAGGAAGAGGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

250

Amino Acids

26.23

Weight (kDa)

5.35

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25810
fragaria_vesca	FvH4_2g35700
malus_domestica	MD08G1115300.v1.1 MD15G1094400.v1.1
prunus_persica	Prupe.1G449500_v2.0.a1
pyrus_communis	pycom15g08720
rosa_chinensis	RchiOBHm_Chr6g0306101
rosa_laevigata	RLG00000010825
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG459100 Rh6BG441800 Rh6CG473600 Rh6DG459800
rosa_wichuraiana	Rw6G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AccII	CGCG	1 cut(s)	155
AciI	CCGC	5 cut(s)	207, 225, 267, 324, 327
AclWI	GGATC	3 cut(s)	118, 282, 311
AcoI	YGGCCR	2 cut(s)	192, 211
AcsI	RAATTY	1 cut(s)	71
AfiI	CCNNNNNNNGG	4 cut(s)	238, 485, 564, 656
AgsI	TTSAA	2 cut(s)	71, 573
AhlI	ACTAGT	2 cut(s)	148, 184
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	5 cut(s)	133, 170, 332, 491, 612
AluI	AGCT	5 cut(s)	133, 170, 332, 491, 612
Alw21I	GWGCWC	1 cut(s)	493
AlwI	GGATC	3 cut(s)	118, 282, 311
AoxI	GGCC	6 cut(s)	192, 211, 253, 505, 555, 647
ApaI	GGGCCC	2 cut(s)	509, 651
ApeKI	GCWGC	3 cut(s)	35, 320, 329
ApoI	RAATTY	1 cut(s)	71
AspS9I	GGNCC	8 cut(s)	475, 505, 506, 555, 588, 596, 647, 648
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	4 cut(s)	70, 221, 238, 619
AvaII	GGWCC	3 cut(s)	475, 588, 596
BaeGI	GKGCMC	2 cut(s)	509, 651
BanII	GRGCYC	4 cut(s)	61, 493, 509, 651
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	3 cut(s)	22, 332, 341
BceAI	ACGGC	1 cut(s)	179
BciVI	GTATCC	1 cut(s)	395
BcnI	CCSGG	1 cut(s)	239
BcuI	ACTAGT	2 cut(s)	148, 184
BfaI	CTAG	5 cut(s)	134, 149, 185, 344, 545
BfuAI	ACCTGC	1 cut(s)	348
BfuI	GTATCC	1 cut(s)	395
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	5 cut(s)	36, 321, 324, 327, 330
BlsI	GCNGC	5 cut(s)	37, 322, 325, 328, 331
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	3 cut(s)	475, 588, 596
BmgT120I	GGNCC	8 cut(s)	475, 505, 506, 555, 588, 596, 647, 648
BmiI	GGNNCC	8 cut(s)	22, 477, 507, 508, 535, 556, 649, 650
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	3 cut(s)	528, 640, 649
BmsI	GCATC	2 cut(s)	133, 687
BmuI	ACTGGG	3 cut(s)	528, 640, 649
BpiI	GAAGAC	1 cut(s)	274
BpuMI	CCSGG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	15, 117, 250
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 485, 564, 656
Bse118I	RCCGGY	2 cut(s)	209, 548
Bse1I	ACTGG	6 cut(s)	27, 361, 523, 623, 635, 644
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	15, 117, 250
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	4 cut(s)	238, 485, 564, 656
BseMII	CTCAG	2 cut(s)	576, 723
BseNI	ACTGG	6 cut(s)	27, 361, 523, 623, 635, 644
BseRI	GAGGAG	1 cut(s)	248
BseSI	GKGCMC	2 cut(s)	509, 651
BseXI	GCAGC	3 cut(s)	22, 332, 341
BseYI	CCCAGC	2 cut(s)	580, 671
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	6 cut(s)	194, 213, 255, 507, 557, 649
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	5 cut(s)	210, 222, 239, 549, 599
BslI	CCNNNNNNNGG	4 cut(s)	238, 485, 564, 656
BsnI	GGCC	6 cut(s)	194, 213, 255, 507, 557, 649
Bsp120I	GGGCCC	2 cut(s)	505, 647
Bsp1286I	GDGCHC	4 cut(s)	61, 493, 509, 651
Bsp143I	GATC	4 cut(s)	110, 287, 303, 307
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	5 cut(s)	207, 225, 267, 324, 327
BspANI	GGCC	6 cut(s)	194, 213, 255, 507, 557, 649
BspCNI	CTCAG	2 cut(s)	575, 724
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	8 cut(s)	22, 477, 507, 508, 535, 556, 649, 650
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	118, 282, 311
BspQI	GCTCTTC	1 cut(s)	455
BsrFI	RCCGGY	2 cut(s)	209, 548
BsrI	ACTGG	6 cut(s)	27, 361, 523, 623, 635, 644
BssAI	RCCGGY	2 cut(s)	209, 548
BssECI	CCNNGG	3 cut(s)	15, 117, 250
BssMI	GATC	4 cut(s)	110, 287, 303, 307
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	2 cut(s)	15, 117
Bst2BI	CACGAG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	280, 457, 500
Bst6I	CTCTTC	2 cut(s)	455, 732
BstC8I	GCNNGC	3 cut(s)	211, 387, 669
BstDEI	CTNAG	2 cut(s)	562, 732
BstDSI	CCRYGG	1 cut(s)	117
BstEII	GGTNACC	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	540
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	4 cut(s)	113, 290, 306, 310
BstMBI	GATC	4 cut(s)	110, 287, 303, 307
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 152, 161, 326, 329, 554
BstNSI	RCATGY	1 cut(s)	182
BstPI	GGTNACC	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	237
BstSLI	GKGCMC	2 cut(s)	509, 651
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	3 cut(s)	22, 332, 341
BstV2I	GAAGAC	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	6 cut(s)	194, 213, 255, 507, 557, 649
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	540
BtsIMutI	CAGTG	4 cut(s)	34, 516, 628, 729
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	211, 387, 669
CciI	TCATGA	1 cut(s)	198
Cfr10I	RCCGGY	2 cut(s)	209, 548
Cfr13I	GGNCC	8 cut(s)	475, 505, 506, 555, 588, 596, 647, 648
ClaI	ATCGAT	1 cut(s)	306
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	3 cut(s)	118, 179, 199
DdeI	CTNAG	2 cut(s)	562, 732
DpnI	GATC	4 cut(s)	112, 289, 305, 309
DpnII	GATC	4 cut(s)	110, 287, 303, 307
EaeI	YGGCCR	2 cut(s)	192, 211
Eam1104I	CTCTTC	2 cut(s)	455, 732
EarI	CTCTTC	2 cut(s)	455, 732
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	491
Eco130I	CCWWGG	2 cut(s)	15, 117
Eco24I	GRGCYC	4 cut(s)	61, 493, 509, 651
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	3 cut(s)	475, 588, 596
Eco53kI	GAGCTC	1 cut(s)	491
Eco91I	GGTNACC	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	491
EcoO109I	RGGNCCY	4 cut(s)	506, 555, 588, 648
EcoO65I	GGTNACC	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	15, 117
EcoT38I	GRGCYC	4 cut(s)	61, 493, 509, 651
ErhI	CCWWGG	2 cut(s)	15, 117
FaeI	CATG	3 cut(s)	121, 182, 202
FaiI	YATR	7 cut(s)	52, 119, 180, 200, 421, 462, 684
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	3 cut(s)	117, 178, 198
Fnu4HI	GCNGC	5 cut(s)	36, 321, 324, 327, 330
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	4 cut(s)	61, 493, 509, 651
Fsp4HI	GCNGC	5 cut(s)	36, 321, 324, 327, 330
FspBI	CTAG	5 cut(s)	134, 149, 185, 344, 545
GluI	GCNGC	5 cut(s)	36, 321, 324, 327, 330
GsaI	CCCAGC	2 cut(s)	584, 675
HaeIII	GGCC	6 cut(s)	194, 213, 255, 507, 557, 649
HapII	CCGG	5 cut(s)	210, 222, 239, 549, 599
Hin1II	CATG	3 cut(s)	121, 182, 202
HpaII	CCGG	5 cut(s)	210, 222, 239, 549, 599
HphI	GGTGA	4 cut(s)	70, 221, 238, 619
Hpy166II	GTNNAC	2 cut(s)	475, 637
Hpy188I	TCNGA	2 cut(s)	287, 704
Hpy188III	TCNNGA	1 cut(s)	199
Hpy8I	GTNNAC	2 cut(s)	475, 637
HpyAV	CCTTC	2 cut(s)	94, 568
HpyCH4III	ACNGT	3 cut(s)	280, 457, 500
HpyCH4V	TGCA	4 cut(s)	146, 182, 389, 678
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 152, 161, 326, 329, 554
HpyF3I	CTNAG	2 cut(s)	562, 732
Hsp92II	CATG	3 cut(s)	121, 182, 202
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	110, 287, 303, 307
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	2 cut(s)	488, 533
Lsp1109I	GCAGC	3 cut(s)	22, 332, 341
LweI	GCATC	2 cut(s)	133, 687
MaeI	CTAG	5 cut(s)	134, 149, 185, 344, 545
MaeIII	GTNAC	5 cut(s)	172, 227, 244, 269, 335
MalI	GATC	4 cut(s)	112, 289, 305, 309
MboI	GATC	4 cut(s)	110, 287, 303, 307
MboII	GAAGA	4 cut(s)	274, 442, 685, 749
MfeI	CAATTG	2 cut(s)	311, 468
MhlI	GDGCHC	4 cut(s)	61, 493, 509, 651
MluCI	AATT	5 cut(s)	47, 71, 311, 375, 468
MmeI	TCCRAC	1 cut(s)	88
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	2 cut(s)	234, 495
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	5 cut(s)	210, 222, 239, 549, 599
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	2 cut(s)	311, 468
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	6 cut(s)	11, 152, 161, 326, 329, 554
NaeI	GCCGGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	239
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	110, 287, 303, 307
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	121, 182, 202
NlaIV	GGNNCC	8 cut(s)	22, 477, 507, 508, 535, 556, 649, 650
NmeAIII	GCCGAG	1 cut(s)	231
NmuCI	GTSAC	4 cut(s)	172, 227, 244, 269
NspI	RCATGY	1 cut(s)	182
OliI	CACNNNNGTG	1 cut(s)	170
PagI	TCATGA	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	211
PkrI	GCNGC	5 cut(s)	37, 322, 325, 328, 331
PpuMI	RGGWCCY	1 cut(s)	588
Psp124BI	GAGCTC	1 cut(s)	493
Psp5II	RGGWCCY	1 cut(s)	588
PspEI	GGTNACC	1 cut(s)	227
PspFI	CCCAGC	2 cut(s)	580, 671
PspN4I	GGNNCC	8 cut(s)	22, 477, 507, 508, 535, 556, 649, 650
PspOMI	GGGCCC	2 cut(s)	505, 647
PspPI	GGNCC	8 cut(s)	475, 505, 506, 555, 588, 596, 647, 648
PspPPI	RGGWCCY	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	493
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	234, 495
SatI	GCNGC	5 cut(s)	36, 321, 324, 327, 330
Sau3AI	GATC	4 cut(s)	110, 287, 303, 307
Sau96I	GGNCC	8 cut(s)	475, 505, 506, 555, 588, 596, 647, 648
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	4 cut(s)	61, 493, 509, 651
SfaNI	GCATC	2 cut(s)	133, 687
SinI	GGWCC	3 cut(s)	475, 588, 596
SmiMI	CAYNNNNRTG	1 cut(s)	170
SpeI	ACTAGT	2 cut(s)	148, 184
Sse9I	AATT	5 cut(s)	47, 71, 311, 375, 468
SsiI	CCGC	5 cut(s)	207, 225, 267, 324, 327
SspMI	CTAG	5 cut(s)	134, 149, 185, 344, 545
SstI	GAGCTC	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	15, 117
TaaI	ACNGT	3 cut(s)	280, 457, 500
TaqI	TCGA	1 cut(s)	306
TasI	AATT	5 cut(s)	47, 71, 311, 375, 468
TauI	GCSGC	2 cut(s)	326, 329
Tru1I	TTAA	2 cut(s)	234, 495
Tru9I	TTAA	2 cut(s)	234, 495
TscAI	CASTG	4 cut(s)	34, 523, 635, 736
TseFI	GTSAC	4 cut(s)	172, 227, 244, 269
TseI	GCWGC	3 cut(s)	35, 320, 329
Tsp45I	GTSAC	4 cut(s)	172, 227, 244, 269
TspDTI	ATGAA	5 cut(s)	64, 368, 590, 685, 699
TspRI	CASTG	4 cut(s)	34, 523, 635, 736
VpaK11BI	GGWCC	3 cut(s)	475, 588, 596
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	5 cut(s)	134, 149, 185, 344, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.