Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016674

Physical Location & Seq

Genomic Coordinates Reverse (-)

10438653 .. 10441010

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1115300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGAAAATAGCCTTGGGAACCACCGGTGAGGCTGCTCTTCCAGAAGTCTGGAGAGCCCTTGTGGTTGAGTTTATCACTACCTTCCTCTTCGTCTTTGCTGGTCTAGAAGGAGATACACTAGTGGCGTTGTTTGCCGTAGCTGTGACACATGCACTAGTCGTGGCCGTGATGATATCTGGCGGTCACATATCTGGCGGTCACCTTAACCCTGCCGTCACGCTTGGCCTCCTGTGTGGCGGTCACATTACCCTGTTTCGATCCGTACTCTATTGGATAGATCAATTGTTAGCAGCTGCCGCAGCTTGTTACCTTTTAGAGTATCTCAGTGGCGGATTGACTACTCCAATCCATTCACTTGCAAGTGGGGTGGGCTACTTACAAGGTGTGATATGGGAGATTGTCCTCACATTCTCCTTGCTATTCACAGTCTATGCTACAATAGTCGACAAGAGTGGATCTCTTTATGGATTGGGCCCTACACTAACTGGGTTTGTTGTCGGGGCCAATATCCTAGCTGGCGGAGCCTTCTCAGGAGCTTCAATGAATCCAGCTAGGTCCTTTGGTCCTGCTTTGGTAAGCTGGAACTGGACTGACCACTGGGTTTACTGGGTTGGTCCTCTCATTGGTGGTGGACTTGCTGGGTTCATTTATGAAAATTTCTTCATTATCGAACAAACTCATCTCCCAATTCCCACAGTGGAAGATGCTTTGTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

241

Amino Acids

25.23

Weight (kDa)

4.97

Isoelectric Point (pI)

26.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 218	1.5e-59	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25810
fragaria_vesca	FvH4_2g35700
malus_domestica	MD08G1115300.v1.1 MD15G1094400.v1.1
prunus_persica	Prupe.1G449500_v2.0.a1
pyrus_communis	pycom15g08720
rosa_chinensis	RchiOBHm_Chr6g0306101
rosa_laevigata	RLG00000010825
rosa_rugosa	Rorug06G0346800
rosa_samantha	Rh6AG459100 Rh6BG441800 Rh6CG473600 Rh6DG459800
rosa_wichuraiana	Rw6G040020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	6 cut(s)	183, 198, 240, 300, 333, 522
AclWI	GGATC	2 cut(s)	255, 466
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	658
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgeI	ACCGGT	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	543
AhlI	ACTAGT	2 cut(s)	121, 157
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	7 cut(s)	143, 296, 305, 518, 539, 554, 582
AluI	AGCT	7 cut(s)	143, 296, 305, 518, 539, 554, 582
AlwI	GGATC	2 cut(s)	255, 466
AoxI	GGCC	4 cut(s)	165, 226, 475, 504
ApaI	GGGCCC	1 cut(s)	479
ApeKI	GCWGC	4 cut(s)	35, 293, 296, 302
ApoI	RAATTY	1 cut(s)	658
AsiGI	ACCGGT	1 cut(s)	26
AspS9I	GGNCC	6 cut(s)	475, 476, 504, 558, 566, 617
AsuHPI	GGTGA	2 cut(s)	41, 194
AvaII	GGWCC	3 cut(s)	558, 566, 617
BaeGI	GKGCMC	1 cut(s)	479
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BanII	GRGCYC	2 cut(s)	61, 479
BbvI	GCAGC	4 cut(s)	22, 283, 305, 314
BceAI	ACGGC	3 cut(s)	122, 152, 200
BcuI	ACTAGT	2 cut(s)	121, 157
BfaI	CTAG	5 cut(s)	107, 122, 158, 515, 555
BisI	GCNGC	5 cut(s)	36, 294, 297, 300, 303
BlsI	GCNGC	5 cut(s)	37, 295, 298, 301, 304
Bme18I	GGWCC	3 cut(s)	558, 566, 617
BmgT120I	GGNCC	6 cut(s)	475, 476, 504, 558, 566, 617
BmiI	GGNNCC	4 cut(s)	22, 477, 505, 526
BmrI	ACTGGG	3 cut(s)	498, 610, 619
BmsI	GCATC	1 cut(s)	697
BmuI	ACTGGG	3 cut(s)	498, 610, 619
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpmI	CTGGAG	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	4 cut(s)	493, 593, 605, 614
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMII	CTCAG	2 cut(s)	340, 546
BseNI	ACTGG	4 cut(s)	493, 593, 605, 614
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	4 cut(s)	22, 283, 305, 314
BseYI	CCCAGC	1 cut(s)	641
BshFI	GGCC	4 cut(s)	167, 228, 477, 506
BshTI	ACCGGT	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	626
BsnI	GGCC	4 cut(s)	167, 228, 477, 506
Bsp120I	GGGCCC	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	61, 479
Bsp143I	GATC	3 cut(s)	260, 280, 458
BspACI	CCGC	6 cut(s)	183, 198, 240, 300, 333, 522
BspANI	GGCC	4 cut(s)	167, 228, 477, 506
BspCNI	CTCAG	2 cut(s)	339, 545
BspLI	GGNNCC	4 cut(s)	22, 477, 505, 526
BspPI	GGATC	2 cut(s)	255, 466
BspQI	GCTCTTC	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	4 cut(s)	493, 593, 605, 614
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	260, 280, 458
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	430, 700
Bst6I	CTCTTC	2 cut(s)	45, 95
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	2 cut(s)	326, 532
BstEII	GGTNACC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	263, 283, 461
BstMBI	GATC	3 cut(s)	260, 280, 458
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 134, 299, 302, 524
BstNSI	RCATGY	1 cut(s)	155
BstPI	GGTNACC	1 cut(s)	200
BstSLI	GKGCMC	1 cut(s)	479
BstV1I	GCAGC	4 cut(s)	22, 283, 305, 314
BstX2I	RGATCY	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	4 cut(s)	167, 228, 477, 506
BtsIMutI	CAGTG	3 cut(s)	334, 598, 705
Cac8I	GCNNGC	1 cut(s)	520
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	6 cut(s)	475, 476, 504, 558, 566, 617
Csp6I	GTAC	1 cut(s)	266
CspAI	ACCGGT	1 cut(s)	26
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	1 cut(s)	152
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	326, 532
DpnI	GATC	3 cut(s)	262, 282, 460
DpnII	GATC	3 cut(s)	260, 280, 458
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	45, 95
EarI	CTCTTC	2 cut(s)	45, 95
EciI	GGCGGA	2 cut(s)	348, 537
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	2 cut(s)	61, 479
Eco32I	GATATC	1 cut(s)	177
Eco47I	GGWCC	3 cut(s)	558, 566, 617
Eco91I	GGTNACC	1 cut(s)	200
EcoO109I	RGGNCCY	2 cut(s)	476, 558
EcoO65I	GGTNACC	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	61, 479
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	155
FaiI	YATR	6 cut(s)	153, 191, 394, 435, 468, 654
FatI	CATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	5 cut(s)	36, 294, 297, 300, 303
FriOI	GRGCYC	2 cut(s)	61, 479
Fsp4HI	GCNGC	5 cut(s)	36, 294, 297, 300, 303
FspBI	CTAG	5 cut(s)	107, 122, 158, 515, 555
GluI	GCNGC	5 cut(s)	36, 294, 297, 300, 303
GsaI	CCCAGC	1 cut(s)	645
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	4 cut(s)	167, 228, 477, 506
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	41, 194
Hpy166II	GTNNAC	3 cut(s)	448, 607, 635
Hpy188III	TCNNGA	4 cut(s)	44, 52, 107, 534
Hpy8I	GTNNAC	3 cut(s)	448, 607, 635
HpyAV	CCTTC	3 cut(s)	94, 104, 538
HpyCH4III	ACNGT	2 cut(s)	430, 700
HpyCH4V	TGCA	2 cut(s)	155, 362
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 134, 299, 302, 524
HpyF3I	CTNAG	2 cut(s)	326, 532
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	260, 280, 458
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	2 cut(s)	524, 536
Lsp1109I	GCAGC	4 cut(s)	22, 283, 305, 314
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	5 cut(s)	107, 122, 158, 515, 555
MaeIII	GTNAC	6 cut(s)	145, 185, 200, 217, 242, 308
MalI	GATC	3 cut(s)	262, 282, 460
MboI	GATC	3 cut(s)	260, 280, 458
MboII	GAAGA	4 cut(s)	32, 82, 655, 716
MfeI	CAATTG	1 cut(s)	284
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	61, 479
MluCI	AATT	3 cut(s)	284, 658, 690
MnlI	CCTC	5 cut(s)	25, 98, 239, 416, 630
MseI	TTAA	2 cut(s)	207, 721
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	284
MwoI	GCNNNNNNNGC	5 cut(s)	11, 134, 299, 302, 524
NdeII	GATC	3 cut(s)	260, 280, 458
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	4 cut(s)	22, 477, 505, 526
NmuCI	GTSAC	5 cut(s)	145, 185, 200, 217, 242
NspI	RCATGY	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	45
PfeI	GAWTC	1 cut(s)	547
PinAI	ACCGGT	1 cut(s)	26
PkrI	GCNGC	5 cut(s)	37, 295, 298, 301, 304
PpuMI	RGGWCCY	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	558
PspEI	GGTNACC	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	641
PspN4I	GGNNCC	4 cut(s)	22, 477, 505, 526
PspOMI	GGGCCC	1 cut(s)	475
PspPI	GGNCC	6 cut(s)	475, 476, 504, 558, 566, 617
PspPPI	RGGWCCY	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SalI	GTCGAC	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	207, 721
SatI	GCNGC	5 cut(s)	36, 294, 297, 300, 303
Sau3AI	GATC	3 cut(s)	260, 280, 458
Sau96I	GGNCC	6 cut(s)	475, 476, 504, 558, 566, 617
SduI	GDGCHC	2 cut(s)	61, 479
SfaNI	GCATC	1 cut(s)	697
SgrAI	CRCCGGYG	1 cut(s)	26
SinI	GGWCC	3 cut(s)	558, 566, 617
SpeI	ACTAGT	2 cut(s)	121, 157
Sse9I	AATT	3 cut(s)	284, 658, 690
SsiI	CCGC	6 cut(s)	183, 198, 240, 300, 333, 522
SspMI	CTAG	5 cut(s)	107, 122, 158, 515, 555
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	430, 700
TaqI	TCGA	3 cut(s)	259, 447, 672
TasI	AATT	3 cut(s)	284, 658, 690
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	2 cut(s)	207, 721
Tru9I	TTAA	2 cut(s)	207, 721
TscAI	CASTG	3 cut(s)	334, 605, 705
TseFI	GTSAC	5 cut(s)	145, 185, 200, 217, 242
TseI	GCWGC	4 cut(s)	35, 293, 296, 302
Tsp45I	GTSAC	5 cut(s)	145, 185, 200, 217, 242
TspDTI	ATGAA	4 cut(s)	560, 637, 655, 669
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	3 cut(s)	334, 605, 705
VpaK11BI	GGWCC	3 cut(s)	558, 566, 617
XapI	RAATTY	1 cut(s)	658
XbaI	TCTAGA	1 cut(s)	106
XceI	RCATGY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	5 cut(s)	107, 122, 158, 515, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.