FvH4_2g36140

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016770
Physical Location & Seq
Forward (+)
26511117 .. 26513541
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36140.t2

Sequence Viewer

Length: 666 bp
ATGTTTAAGTTGTGGAAATGGTACCAGAATTGCTTGGTGTCTCACCCAGTTAAGACACAGGTCATTAGCTCTGGTTTGATTTGGGGTGTTGGTGATATAGCTGCCCAGACCATCACTCACTCCACAGCCAACAAGGACAATCAAATTCAAACTCAAACTCATCAGGGAGAAGATGAAGAGTTAAAGATCAATTGGAGAAGAGTGATTAAAACCAGCTTGTTTGGATTCGGGTTTGTCGGGCCAGTTGGTCACCTTTGGTATCAAGGTTTGGATCGATATATAAAATCACGACTTCTACTGAAGCAGAACTCATTTCGATTTGTTGCTTCTAAAGTTGCGATTGATGGGTTTCTTTTTGGCCCACTGGATTTACTTGTATTTTTCACTTACATGGGTTTTGCTGCTGGAAAGAGTGTTCCTCAAATAAAGGAAGATGTAAAAAGGGACTTTCTCCCAGCCTTTGTTCTTGAAGGAGGCATATGGCCAATTGTGCAAGTAGTAAATTTCCGATTTGTACCTGTTAGGTATCAACTCCTCTATGTCAACGTCTTCTGCTTGTTGGATAGCTCTTTTCTGTCATGGCTCGAGCAACAGGAGGATGCTTCATGGAAACAATGGTTGAAATCTTGCTTAAGGTTTAGTGAACAAGAAGGCAAAGGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

222

Amino Acids

25.45

Weight (kDa)

9.1

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 91 - 151 7.9e-20 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016770)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36140
malus_domestica MD15G1098000.v1.1
prunus_persica Prupe.1G452800_v2.0.a1 Prupe.1G452800_v2.0.a1
pyrus_communis pycom15g08980
rosa_chinensis RchiOBHm_Chr6g0305731
rosa_laevigata RLG00000010864
rosa_multiflora Rmu_sc0001809.1_g000038
rosa_rugosa Rorug06G0343600
rosa_samantha Rh6AG455100 Rh6BG446300 Rh6CG469000 Rh6DG455600
rosa_wichuraiana Rw6G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 2 cut(s) 144, 502
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 2 cut(s) 23, 516
AflII CTTAAG 1 cut(s) 631
AgsI TTSAA 3 cut(s) 149, 470, 622
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 4 cut(s) 69, 101, 216, 567
AluI AGCT 4 cut(s) 69, 101, 216, 567
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 3 cut(s) 239, 358, 482
ApeKI GCWGC 2 cut(s) 101, 401
ApoI RAATTY 2 cut(s) 144, 502
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 239, 359
AsuHPI GGTGA 3 cut(s) 35, 104, 242
AvaI CYCGRG 1 cut(s) 584
BalI TGGCCA 1 cut(s) 484
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 541
BbvI GCAGC 2 cut(s) 88, 388
BccI CCATC 2 cut(s) 119, 338
BcoDI GTCTC 1 cut(s) 45
BfrI CTTAAG 1 cut(s) 631
BisI GCNGC 2 cut(s) 102, 402
BlsI GCNGC 2 cut(s) 103, 403
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 2 cut(s) 239, 359
BmiI GGNNCC 1 cut(s) 23
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 589
BmuI ACTGGG 1 cut(s) 41
BoxI GACNNNNGTC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 541
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bsa29I ATCGAT 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 47, 242, 369
BseCI ATCGAT 1 cut(s) 274
BseGI GGATG 1 cut(s) 604
BseNI ACTGG 3 cut(s) 47, 242, 369
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 2 cut(s) 88, 388
BseYI CCCAGC 1 cut(s) 454
BshFI GGCC 3 cut(s) 241, 360, 484
BshNI GGYRCC 1 cut(s) 21
BshVI ATCGAT 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 458
BsnI GGCC 3 cut(s) 241, 360, 484
BsoBI CYCGRG 1 cut(s) 584
Bsp143I GATC 2 cut(s) 186, 271
BspANI GGCC 3 cut(s) 241, 360, 484
BspDI ATCGAT 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 21
BspTI CTTAAG 1 cut(s) 631
BsrI ACTGG 3 cut(s) 47, 242, 369
BssMI GATC 2 cut(s) 186, 271
Bst6I CTCTTC 2 cut(s) 171, 193
BstAFI CTTAAG 1 cut(s) 631
BstEII GGTNACC 1 cut(s) 248
BstF5I GGATG 1 cut(s) 604
BstKTI GATC 2 cut(s) 189, 274
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 186, 271
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstPAI GACNNNNGTC 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 88, 388
BstV2I GAAGAC 1 cut(s) 541
Bsu15I ATCGAT 1 cut(s) 274
BsuRI GGCC 3 cut(s) 241, 360, 484
BsuTUI ATCGAT 1 cut(s) 274
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 239, 359
ClaI ATCGAT 1 cut(s) 274
Csp6I GTAC 2 cut(s) 22, 515
CviAII CATG 3 cut(s) 391, 579, 606
CviQI GTAC 2 cut(s) 22, 515
DpnI GATC 2 cut(s) 188, 273
DpnII GATC 2 cut(s) 186, 271
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 2 cut(s) 171, 193
EarI CTCTTC 2 cut(s) 171, 193
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 584
Eco91I GGTNACC 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 248
FaeI CATG 3 cut(s) 394, 582, 609
FaiI YATR 9 cut(s) 98, 279, 281, 392, 479, 481, 540, 580, 607
FaqI GGGAC 1 cut(s) 458
FatI CATG 3 cut(s) 390, 578, 605
FauNDI CATATG 1 cut(s) 479
Fnu4HI GCNGC 2 cut(s) 102, 402
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 2 cut(s) 102, 402
GluI GCNGC 2 cut(s) 102, 402
GsaI CCCAGC 1 cut(s) 458
HaeIII GGCC 3 cut(s) 241, 360, 484
Hin1II CATG 3 cut(s) 394, 582, 609
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 1 cut(s) 225
HphI GGTGA 3 cut(s) 35, 104, 242
Hpy166II GTNNAC 2 cut(s) 544, 644
Hpy188I TCNGA 1 cut(s) 509
Hpy188III TCNNGA 2 cut(s) 288, 467
Hpy8I GTNNAC 2 cut(s) 544, 644
HpyAV CCTTC 2 cut(s) 464, 644
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 1 cut(s) 493
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 3 cut(s) 394, 582, 609
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 186, 271
Lsp1109I GCAGC 2 cut(s) 88, 388
LweI GCATC 1 cut(s) 589
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 248
MalI GATC 2 cut(s) 188, 273
MboI GATC 2 cut(s) 186, 271
MboII GAAGA 5 cut(s) 182, 188, 210, 443, 541
MfeI CAATTG 2 cut(s) 190, 486
MlsI TGGCCA 1 cut(s) 484
MluCI AATT 5 cut(s) 28, 144, 190, 486, 502
MluNI TGGCCA 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 4 cut(s) 429, 467, 545, 589
Mox20I TGGCCA 1 cut(s) 484
MscI TGGCCA 1 cut(s) 484
MseI TTAA 5 cut(s) 6, 51, 182, 207, 632
MslI CAYNNNNRTG 1 cut(s) 389
Msp20I TGGCCA 1 cut(s) 484
MspCI CTTAAG 1 cut(s) 631
MunI CAATTG 2 cut(s) 190, 486
MwoI GCNNNNNNNGC 1 cut(s) 490
NdeI CATATG 1 cut(s) 479
NdeII GATC 2 cut(s) 186, 271
NlaIII CATG 3 cut(s) 394, 582, 609
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 248
PaeR7I CTCGAG 1 cut(s) 584
PfeI GAWTC 1 cut(s) 225
PkrI GCNGC 2 cut(s) 103, 403
PshAI GACNNNNGTC 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 2 cut(s) 239, 359
PspXI VCTCGAGB 1 cut(s) 584
RsaI GTAC 2 cut(s) 23, 516
RsaNI GTAC 2 cut(s) 22, 515
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 5 cut(s) 6, 51, 182, 207, 632
SatI GCNGC 2 cut(s) 102, 402
Sau3AI GATC 2 cut(s) 186, 271
Sau96I GGNCC 2 cut(s) 239, 359
SfaNI GCATC 1 cut(s) 589
Sfr274I CTCGAG 1 cut(s) 584
SlaI CTCGAG 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 2 cut(s) 584, 631
SmoI CTYRAG 2 cut(s) 584, 631
Sse9I AATT 5 cut(s) 28, 144, 190, 486, 502
TaiI ACGT 1 cut(s) 549
TaqI TCGA 3 cut(s) 274, 316, 585
TasI AATT 5 cut(s) 28, 144, 190, 486, 502
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 5 cut(s) 6, 51, 182, 207, 632
Tru9I TTAA 5 cut(s) 6, 51, 182, 207, 632
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 2 cut(s) 101, 401
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 2 cut(s) 189, 594
TspRI CASTG 1 cut(s) 369
Vha464I CTTAAG 1 cut(s) 631
XapI RAATTY 2 cut(s) 144, 502
XhoI CTCGAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.