Rw6G039700

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0016770
Physical Location & Seq
Reverse (-)
63650089 .. 63652095
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039700.1

Sequence Viewer

Length: 630 bp
ATGTTTAGGTTGTGGAAATGGTACCAGAATTGCTTGGCGTCTCACCCAGTTAAGACACAGGTCATTAGCTCTGGTTTGATTTGGGGGGTTGGTGATATAGCTGCCCAGACCATCACTCACTCCACAGCCAACAAGCACAATCAGATTCAAACTCATCAGGGAGAAGATGAAGAGTTGAAGATCAATTGGAGAAGAGTGACTAAAACCAGCTTGTTTGGATTTGGATTCGTTGGGCCAGTTGGTCACCTCTGGTATGAAGGTTTGGATCGATATATAAAATCACGACTTCTACTGAAACAGAACTCATTTCGGTTTGTTGCTACTAAAGTTGCGATTGATGGGTTTCTTTTTGGGCCATTGGATTTACTTGTATTTTTCACTTACATGGGTTTTGCTGCTGGAAAGAGTGTTCCTCAAGTCAAGGAAGATGTAAAAAGGGATTTTCTCCCTGCCTTTGTTCTTGAAGGGGCATATGGCCAATTGTGCAAGTATCAACTCCTCTATGTCAACTTCTTCTGCTTGTTGGATAGCTCTTTTCTGTCATGGCTCGAGCAACAGGAGGATGCTCCATGGAAACAATGGTTGAAATCTTGCTTAAGTTTTAGTGAACAAAAAGGCAAAGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

209

Amino Acids

24.02

Weight (kDa)

8.99

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016770)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36140
malus_domestica MD15G1098000.v1.1
prunus_persica Prupe.1G452800_v2.0.a1 Prupe.1G452800_v2.0.a1
pyrus_communis pycom15g08980
rosa_chinensis RchiOBHm_Chr6g0305731
rosa_laevigata RLG00000010864
rosa_multiflora Rmu_sc0001809.1_g000038
rosa_rugosa Rorug06G0343600
rosa_samantha Rh6AG455100 Rh6BG446300 Rh6CG469000 Rh6DG455600
rosa_wichuraiana Rw6G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 23
AflII CTTAAG 1 cut(s) 595
AgsI TTSAA 4 cut(s) 149, 178, 464, 586
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 4 cut(s) 69, 101, 210, 531
AluI AGCT 4 cut(s) 69, 101, 210, 531
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 3 cut(s) 233, 353, 475
ApeKI GCWGC 2 cut(s) 101, 395
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 233, 353
AsuHPI GGTGA 3 cut(s) 35, 104, 236
AvaI CYCGRG 1 cut(s) 548
BalI TGGCCA 1 cut(s) 477
BanI GGYRCC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 88, 382
BccI CCATC 2 cut(s) 119, 332
BcoDI GTCTC 1 cut(s) 45
BfrI CTTAAG 1 cut(s) 595
BisI GCNGC 2 cut(s) 102, 396
BlsI GCNGC 2 cut(s) 103, 397
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 233, 353
BmiI GGNNCC 1 cut(s) 23
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 1 cut(s) 41
BoxI GACNNNNGTC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 397, 429
BpuEI CTTGAG 1 cut(s) 399
Bsa29I ATCGAT 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 569
Bse1I ACTGG 2 cut(s) 47, 236
BseCI ATCGAT 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 569
BseGI GGATG 1 cut(s) 568
BseNI ACTGG 2 cut(s) 47, 236
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 2 cut(s) 88, 382
BshFI GGCC 3 cut(s) 235, 355, 477
BshNI GGYRCC 1 cut(s) 21
BshVI ATCGAT 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 548
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 3 cut(s) 235, 355, 477
BsoBI CYCGRG 1 cut(s) 548
Bsp143I GATC 2 cut(s) 180, 265
Bsp19I CCATGG 1 cut(s) 569
BspANI GGCC 3 cut(s) 235, 355, 477
BspDI ATCGAT 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 21
BspTI CTTAAG 1 cut(s) 595
BsrI ACTGG 2 cut(s) 47, 236
BssECI CCNNGG 1 cut(s) 569
BssMI GATC 2 cut(s) 180, 265
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 569
Bst6I CTCTTC 2 cut(s) 165, 187
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 595
BstDSI CCRYGG 1 cut(s) 569
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 2 cut(s) 183, 268
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 180, 265
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstPAI GACNNNNGTC 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 88, 382
Bsu15I ATCGAT 1 cut(s) 268
BsuRI GGCC 3 cut(s) 235, 355, 477
BsuTUI ATCGAT 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 569
BtsCI GGATG 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 233, 353
ClaI ATCGAT 1 cut(s) 268
CseI GACGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 22
CviAII CATG 3 cut(s) 385, 543, 570
CviJI RGCY 9 cut(s) 69, 101, 128, 210, 235, 355, 477, 531, 547
CviKI_1 RGCY 9 cut(s) 69, 101, 128, 210, 235, 355, 477, 531, 547
CviQI GTAC 1 cut(s) 22
DpnI GATC 2 cut(s) 182, 267
DpnII GATC 2 cut(s) 180, 265
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 2 cut(s) 165, 187
EarI CTCTTC 2 cut(s) 165, 187
Eco130I CCWWGG 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 548
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 569
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 3 cut(s) 388, 546, 573
FatI CATG 3 cut(s) 384, 542, 569
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 2 cut(s) 102, 396
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 2 cut(s) 102, 396
GluI GCNGC 2 cut(s) 102, 396
HaeIII GGCC 3 cut(s) 235, 355, 477
HgaI GACGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 388, 546, 573
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 2 cut(s) 145, 225
HphI GGTGA 3 cut(s) 35, 104, 236
Hpy166II GTNNAC 2 cut(s) 508, 608
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 282, 461
Hpy8I GTNNAC 2 cut(s) 508, 608
HpyAV CCTTC 2 cut(s) 251, 458
HpyCH4V TGCA 1 cut(s) 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 388, 546, 573
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 180, 265
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 2 cut(s) 88, 382
LweI GCATC 1 cut(s) 553
MaeIII GTNAC 2 cut(s) 196, 242
MalI GATC 2 cut(s) 182, 267
MboI GATC 2 cut(s) 180, 265
MboII GAAGA 6 cut(s) 176, 182, 190, 204, 437, 505
MfeI CAATTG 2 cut(s) 184, 479
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 3 cut(s) 28, 184, 479
MluNI TGGCCA 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 4 cut(s) 257, 423, 509, 553
Mox20I TGGCCA 1 cut(s) 477
MscI TGGCCA 1 cut(s) 477
MseI TTAA 2 cut(s) 51, 596
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 477
MspCI CTTAAG 1 cut(s) 595
MunI CAATTG 2 cut(s) 184, 479
MwoI GCNNNNNNNGC 1 cut(s) 483
NcoI CCATGG 1 cut(s) 569
NdeI CATATG 1 cut(s) 472
NdeII GATC 2 cut(s) 180, 265
NlaIII CATG 3 cut(s) 388, 546, 573
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 2 cut(s) 196, 242
PaeR7I CTCGAG 1 cut(s) 548
PfeI GAWTC 2 cut(s) 145, 225
PkrI GCNGC 2 cut(s) 103, 397
PshAI GACNNNNGTC 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 2 cut(s) 233, 353
PspXI VCTCGAGB 1 cut(s) 548
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 2 cut(s) 51, 596
SatI GCNGC 2 cut(s) 102, 396
Sau3AI GATC 2 cut(s) 180, 265
Sau96I GGNCC 2 cut(s) 233, 353
SetI ASST 9 cut(s) 11, 63, 71, 103, 212, 249, 262, 533, 625
SfaNI GCATC 1 cut(s) 553
Sfr274I CTCGAG 1 cut(s) 548
SlaI CTCGAG 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 3 cut(s) 414, 548, 595
SmoI CTYRAG 3 cut(s) 414, 548, 595
Sse9I AATT 3 cut(s) 28, 184, 479
StyI CCWWGG 1 cut(s) 569
TaqI TCGA 2 cut(s) 268, 549
TasI AATT 3 cut(s) 28, 184, 479
TfiI GAWTC 2 cut(s) 145, 225
Tru1I TTAA 2 cut(s) 51, 596
Tru9I TTAA 2 cut(s) 51, 596
TseFI GTSAC 2 cut(s) 196, 242
TseI GCWGC 2 cut(s) 101, 395
Tsp45I GTSAC 2 cut(s) 196, 242
TspDTI ATGAA 2 cut(s) 183, 270
Vha464I CTTAAG 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 576
XhoI CTCGAG 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.