Rorug06G0343600

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016770
Physical Location & Seq
Forward (+)
49528394 .. 49529150
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0343600.1

Sequence Viewer

Length: 324 bp
ATGGATACGATAACAAGCATGGTGACCGGAAAGCCAGTGGTGATCTTCAGCAAGAGCACATGTTGCATGAGCCACTCCATCATGTCACTGATAGCAGGGTACGGAGCGAATCCAACAGTGTATGAGCTTGATCAAATCCCAAATGGGCAAGTAATAGAGAGAGTACTAGTTGAGCAGCTGAAATGCGAACCAAGTGTGCCAGCTGTTTTCATAGGCCAACAGTTCGTTGGTGGAGCTAATCAGGTCATGACCCTCCAACTCAGAAACCAGCTTGCGCCTAGGCTGCTAGCGGCCAATGCCATTTGGGTCTGGAACCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

107

Amino Acids

11.71

Weight (kDa)

6.53

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 76 1.2e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016770)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36140
malus_domestica MD15G1098000.v1.1
prunus_persica Prupe.1G452800_v2.0.a1 Prupe.1G452800_v2.0.a1
pyrus_communis pycom15g08980
rosa_chinensis RchiOBHm_Chr6g0305731
rosa_laevigata RLG00000010864
rosa_multiflora Rmu_sc0001809.1_g000038
rosa_rugosa Rorug06G0343600
rosa_samantha Rh6AG455100 Rh6BG446300 Rh6CG469000 Rh6DG455600
rosa_wichuraiana Rw6G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AcoI YGGCCR 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 2 cut(s) 101, 165
AflIII ACRYGT 1 cut(s) 59
AhlI ACTAGT 1 cut(s) 166
AluBI AGCT 5 cut(s) 127, 178, 203, 236, 271
AluI AGCT 5 cut(s) 127, 178, 203, 236, 271
Alw21I GWGCWC 1 cut(s) 59
AoxI GGCC 2 cut(s) 214, 291
ApeKI GCWGC 2 cut(s) 175, 283
AspA2I CCTAGG 1 cut(s) 278
AspLEI GCGC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 34, 52
AsuNHI GCTAGC 1 cut(s) 286
AvrII CCTAGG 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 187, 270
BccI CCATC 1 cut(s) 86
BclI TGATCA 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 166
BfaI CTAG 3 cut(s) 167, 279, 287
BisI GCNGC 3 cut(s) 176, 284, 291
BlnI CCTAGG 1 cut(s) 278
BlsI GCNGC 3 cut(s) 177, 285, 292
BmcAI AGTACT 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 314
BmtI GCTAGC 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 187, 270
BshFI GGCC 2 cut(s) 216, 293
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 27
BsnI GGCC 2 cut(s) 216, 293
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 42, 130
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 216, 293
BspCNI CTCAG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 314
BspOI GCTAGC 1 cut(s) 290
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 278
BssMI GATC 2 cut(s) 42, 130
BssT1I CCWWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 118, 222, 321
BstAPI GCANNNNNTGC 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 201, 273, 288
BstDEI CTNAG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 22
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 2 cut(s) 45, 133
BstMBI GATC 2 cut(s) 42, 130
BstMWI GCNNNNNNNGC 3 cut(s) 63, 283, 296
BstNSI RCATGY 1 cut(s) 63
BstPI GGTNACC 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 187, 270
BsuRI GGCC 2 cut(s) 216, 293
BtsIMutI CAGTG 3 cut(s) 42, 86, 123
Cac8I GCNNGC 3 cut(s) 201, 273, 288
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 100, 164
CviAII CATG 5 cut(s) 19, 60, 67, 82, 247
CviQI GTAC 2 cut(s) 100, 164
DdeI CTNAG 1 cut(s) 260
DpnI GATC 2 cut(s) 44, 132
DpnII GATC 2 cut(s) 42, 130
EaeI YGGCCR 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 31
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 5 cut(s) 22, 63, 70, 85, 250
FaiI YATR 7 cut(s) 20, 61, 68, 83, 123, 212, 248
FatI CATG 5 cut(s) 18, 59, 66, 81, 246
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 176, 284, 291
Fsp4HI GCNGC 3 cut(s) 176, 284, 291
FspBI CTAG 3 cut(s) 167, 279, 287
GlaI GCGC 1 cut(s) 276
GluI GCNGC 3 cut(s) 176, 284, 291
HaeIII GGCC 2 cut(s) 216, 293
HapII CCGG 1 cut(s) 27
HhaI GCGC 1 cut(s) 277
Hin1II CATG 5 cut(s) 22, 63, 70, 85, 250
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 34, 52
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 2 cut(s) 247, 310
HpyCH4III ACNGT 3 cut(s) 118, 222, 321
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 283, 296
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 5 cut(s) 22, 63, 70, 85, 250
HspAI GCGC 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 42, 130
LmnI GCTCC 2 cut(s) 104, 233
LpnPI CCDG 7 cut(s) 40, 48, 81, 213, 227, 281, 295
Lsp1109I GCAGC 2 cut(s) 187, 270
MaeI CTAG 3 cut(s) 167, 279, 287
MaeIII GTNAC 2 cut(s) 22, 84
MalI GATC 2 cut(s) 44, 132
MboI GATC 2 cut(s) 42, 130
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 137, 280
MnlI CCTC 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 178, 203
MspI CCGG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 63, 283, 296
NdeII GATC 2 cut(s) 42, 130
NheI GCTAGC 1 cut(s) 286
NlaIII CATG 5 cut(s) 22, 63, 70, 85, 250
NlaIV GGNNCC 1 cut(s) 314
NmuCI GTSAC 2 cut(s) 22, 84
NspI RCATGY 1 cut(s) 63
PagI TCATGA 1 cut(s) 246
PciI ACATGT 1 cut(s) 59
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 3 cut(s) 177, 285, 292
PscI ACATGT 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 314
PvuII CAGCTG 2 cut(s) 178, 203
RsaI GTAC 2 cut(s) 101, 165
RsaNI GTAC 2 cut(s) 100, 164
SatI GCNGC 3 cut(s) 176, 284, 291
Sau3AI GATC 2 cut(s) 42, 130
ScaI AGTACT 1 cut(s) 165
SduI GDGCHC 1 cut(s) 59
SetI ASST 6 cut(s) 129, 180, 205, 238, 246, 273
SpeI ACTAGT 1 cut(s) 166
SsiI CCGC 1 cut(s) 290
SspMI CTAG 3 cut(s) 167, 279, 287
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 3 cut(s) 118, 222, 321
TatI WGTACW 1 cut(s) 163
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 3 cut(s) 42, 93, 123
TseFI GTSAC 2 cut(s) 22, 84
TseI GCWGC 2 cut(s) 175, 283
Tsp45I GTSAC 2 cut(s) 22, 84
TspDTI ATGAA 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 3 cut(s) 42, 93, 123
XceI RCATGY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 278
XspI CTAG 3 cut(s) 167, 279, 287
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.