MD15G1098000.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016770
Physical Location & Seq
Forward (+)
6811202 .. 6813600
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1098000.v1.1.491

Sequence Viewer

Length: 657 bp
ATGTTTAGGCTGTGGAAATGGTACCAGAATTCTTTATCTGTTCATCCGATTAAGACGCAGGTCATCAGCTCCGGTTTGATTTGGGGGTTTGGTGACATAACTGCCCAGACCATCACCCACTCCACGGCCCAGGAAAGCGAGCGGATTCAAGCTCAGGGTGAAGATGAAAAGTTAAAGATCAACTGGAGAAGAGTGGGTACAACCAGCTTGTTCGGATTTGGGTTTGTCGGGCCTGTTGGCCACCTCTGGTATGAAGGTTTAGATCGATATATAAGGTCAAGACTTCTGCTGCAACCAAACTCATTTCGGTTTGTTGCTTCTAAAGTGGCGATTGATGGATTCCTTTTTGGGCCATTGGATTTACTTGTGTTTTTCACATACATGGGTTTTTCTGCCGGAAAGAGTTTTCCTCAAATCAAGCAAGATGTGAAAAGGGATTTTCTACCGGCCTTTGTTCTAGAAGGAGGCGTATGGCCGATTGTGCAAGTAGTAAACTTTCGGTTTATACCTGTGAGGTATCAGCTCCTCTATGTCAACTTCTTTTGCTTGTTGGATAGCTCTTTTTTGTCATGGCTCGAGCAACAACAGGATGCTCCATGGAAGCAATGGTTGAAATCATTAGTACATGTTAGCAAGCAAAACGGTGATGAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

219

Amino Acids

25.29

Weight (kDa)

9.38

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 130 - 190 3.1e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016770)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36140
malus_domestica MD15G1098000.v1.1
prunus_persica Prupe.1G452800_v2.0.a1 Prupe.1G452800_v2.0.a1
pyrus_communis pycom15g08980
rosa_chinensis RchiOBHm_Chr6g0305731
rosa_laevigata RLG00000010864
rosa_multiflora Rmu_sc0001809.1_g000038
rosa_rugosa Rorug06G0343600
rosa_samantha Rh6AG455100 Rh6BG446300 Rh6CG469000 Rh6DG455600
rosa_wichuraiana Rw6G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AccBSI CCGCTC 1 cut(s) 142
AciI CCGC 1 cut(s) 142
AcoI YGGCCR 2 cut(s) 238, 473
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 3 cut(s) 23, 199, 624
AfiI CCNNNNNNNGG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 625
AgsI TTSAA 2 cut(s) 149, 613
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 5 cut(s) 69, 152, 207, 523, 558
AluI AGCT 5 cut(s) 69, 152, 207, 523, 558
Ama87I CYCGRG 1 cut(s) 575
AoxI GGCC 6 cut(s) 126, 230, 238, 350, 447, 473
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 21
AspS9I GGNCC 3 cut(s) 127, 230, 350
AsuHPI GGTGA 4 cut(s) 104, 106, 170, 656
AvaI CYCGRG 1 cut(s) 575
BalI TGGCCA 1 cut(s) 240
BanI GGYRCC 1 cut(s) 21
BarI GAAGNNNNNNTAC 2 cut(s) 181, 213
BbvI GCAGC 1 cut(s) 276
BccI CCATC 2 cut(s) 119, 329
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 458
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 3 cut(s) 127, 230, 350
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 580
BoxI GACNNNNGTC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpmI CTGGAG 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 123, 129, 596
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 611
BseBI CCWGG 1 cut(s) 131
BseCI ATCGAT 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 123, 129, 596
BseGI GGATG 2 cut(s) 43, 595
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 611
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 276
BshFI GGCC 6 cut(s) 128, 232, 240, 352, 449, 475
BshNI GGYRCC 1 cut(s) 21
BshVI ATCGAT 1 cut(s) 265
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 3 cut(s) 72, 396, 446
BslI CCNNNNNNNGG 1 cut(s) 124
BsnI GGCC 6 cut(s) 128, 232, 240, 352, 449, 475
BsoBI CYCGRG 1 cut(s) 575
Bsp143I GATC 2 cut(s) 177, 262
Bsp19I CCATGG 1 cut(s) 596
BspACI CCGC 1 cut(s) 142
BspANI GGCC 6 cut(s) 128, 232, 240, 352, 449, 475
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 21
BsrBI CCGCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 611
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 3 cut(s) 123, 129, 596
BssMI GATC 2 cut(s) 177, 262
BssT1I CCWWGG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 644
Bst6I CTCTTC 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 140, 635
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 2 cut(s) 123, 596
BstF5I GGATG 2 cut(s) 43, 595
BstKTI GATC 2 cut(s) 180, 265
BstMBI GATC 2 cut(s) 177, 262
BstMWI GCNNNNNNNGC 1 cut(s) 481
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 629
BstPAI GACNNNNGTC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 265
BsuRI GGCC 6 cut(s) 128, 232, 240, 352, 449, 475
BsuTUI ATCGAT 1 cut(s) 265
BtgI CCRYGG 2 cut(s) 123, 596
BtsCI GGATG 2 cut(s) 43, 595
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 140, 635
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 3 cut(s) 127, 230, 350
ClaI ATCGAT 1 cut(s) 265
CseI GACGC 1 cut(s) 64
Csp6I GTAC 3 cut(s) 22, 198, 623
CviAII CATG 4 cut(s) 382, 570, 597, 626
CviQI GTAC 3 cut(s) 22, 198, 623
DdeI CTNAG 1 cut(s) 153
DpnI GATC 2 cut(s) 179, 264
DpnII GATC 2 cut(s) 177, 262
EaeI YGGCCR 2 cut(s) 238, 473
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 596
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 4 cut(s) 385, 573, 600, 629
FatI CATG 4 cut(s) 381, 569, 596, 625
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 2 cut(s) 30, 602
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 458
GluI GCNGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 6 cut(s) 128, 232, 240, 352, 449, 475
HapII CCGG 3 cut(s) 72, 396, 446
HgaI GACGC 1 cut(s) 64
Hin1II CATG 4 cut(s) 385, 573, 600, 629
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 2 cut(s) 145, 339
HpaII CCGG 3 cut(s) 72, 396, 446
HphI GGTGA 4 cut(s) 104, 106, 170, 656
Hpy166II GTNNAC 2 cut(s) 493, 535
Hpy188I TCNGA 2 cut(s) 48, 215
Hpy188III TCNNGA 2 cut(s) 279, 458
Hpy8I GTNNAC 2 cut(s) 493, 535
HpyAV CCTTC 2 cut(s) 248, 455
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4V TGCA 2 cut(s) 292, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 481
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 4 cut(s) 385, 573, 600, 629
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 2 cut(s) 177, 262
LmnI GCTCC 3 cut(s) 74, 528, 598
Lsp1109I GCAGC 1 cut(s) 276
LweI GCATC 1 cut(s) 580
MaeI CTAG 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 92
MalI GATC 2 cut(s) 179, 264
MbiI CCGCTC 1 cut(s) 142
MboI GATC 2 cut(s) 177, 262
MboII GAAGA 2 cut(s) 173, 201
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 1 cut(s) 28
MluNI TGGCCA 1 cut(s) 240
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 5 cut(s) 254, 420, 458, 507, 536
Mox20I TGGCCA 1 cut(s) 240
MscI TGGCCA 1 cut(s) 240
MseI TTAA 2 cut(s) 51, 173
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 1 cut(s) 240
MspI CCGG 3 cut(s) 72, 396, 446
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 481
NcoI CCATGG 1 cut(s) 596
NdeII GATC 2 cut(s) 177, 262
NlaIII CATG 4 cut(s) 385, 573, 600, 629
NlaIV GGNNCC 1 cut(s) 23
NmuCI GTSAC 1 cut(s) 92
NspI RCATGY 1 cut(s) 629
PaeR7I CTCGAG 1 cut(s) 575
PciI ACATGT 1 cut(s) 625
PfeI GAWTC 2 cut(s) 145, 339
PkrI GCNGC 1 cut(s) 291
PscI ACATGT 1 cut(s) 625
PshAI GACNNNNGTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 3 cut(s) 127, 230, 350
PspXI VCTCGAGB 1 cut(s) 575
RsaI GTAC 3 cut(s) 23, 199, 624
RsaNI GTAC 3 cut(s) 22, 198, 623
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 2 cut(s) 51, 173
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 2 cut(s) 177, 262
Sau96I GGNCC 3 cut(s) 127, 230, 350
ScrFI CCNGG 1 cut(s) 131
SfaNI GCATC 1 cut(s) 580
Sfr274I CTCGAG 1 cut(s) 575
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 1 cut(s) 28
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 596
TaaI ACNGT 1 cut(s) 644
TaqI TCGA 2 cut(s) 265, 576
TasI AATT 1 cut(s) 28
TatI WGTACW 1 cut(s) 622
TfiI GAWTC 2 cut(s) 145, 339
Tru1I TTAA 2 cut(s) 51, 173
Tru9I TTAA 2 cut(s) 51, 173
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 32, 180, 267
XapI RAATTY 1 cut(s) 28
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 603
XhoI CTCGAG 1 cut(s) 575
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.