Prupe.1G452800_v2.0.a1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016770
Physical Location & Seq
Forward (+)
38076720 .. 38079433
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G452800.3

Sequence Viewer

Length: 693 bp
ATGAATTCCCGGAAATTACAAAAAATTAGAGAGAAAATGTTGTGGAAATGGTACCAGAATTCCTTAGCTGTTCATCCAATTAAGACGCAGGTCATCAGCTCTGGTTTGATTTGGGGGTTTGGTGATATAGCTGCCCAGACCATCACTCACTCCACGGCCAAGGCCCAACGTCAAATTCAAGCTCAGGGTGAAGATGAAGATGAAGAATTAAAGATCAATTGGAGAAGAGTGTGTACAACCAGCTTGTTTGGATTTGGGTTTGTTGGGCCTGTTGGTCACCTCTGGTATGAGGGTTTGGACCGATATATAAGGTCAAGACTTCTTCTGCAACCAAAGTCATTTCGTTTTGTTGCTTCTAAAGTTGCAATTGATGGGTTCCTTTTTGGGCCATTGGATTTACTAGTGTTTTTCACCTACATGGGGTTTTCTGCTGGAAAGAGCGTTCCTCAAATCAAGGAAGATGTGAAAAGGGATTTTCTTCCAGCCTTTGTTCTGGAAGGAGGGATATGGCCGATTGTGCAAGTAGTGAATTTCCGGTTTATACCTGTGAGGTATCAGCTCCTCTATGTCAACTTCTTCTGCTTGTTAGATAGCAGTTTTTTGTCATGGCTCGAGCAACAAGAAGATGCTCCATGGAAGCAATGGTTGAAATCTTTAGTACATTTTAACAAACAAAAAGATGAAGGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

231

Amino Acids

26.7

Weight (kDa)

9.3

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016770)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36140
malus_domestica MD15G1098000.v1.1
prunus_persica Prupe.1G452800_v2.0.a1 Prupe.1G452800_v2.0.a1
pyrus_communis pycom15g08980
rosa_chinensis RchiOBHm_Chr6g0305731
rosa_laevigata RLG00000010864
rosa_multiflora Rmu_sc0001809.1_g000038
rosa_rugosa Rorug06G0343600
rosa_samantha Rh6AG455100 Rh6BG446300 Rh6CG469000 Rh6DG455600
rosa_wichuraiana Rw6G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
Acc65I GGTACC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 51
AcoI YGGCCR 2 cut(s) 156, 509
AcsI RAATTY 4 cut(s) 4, 58, 174, 529
AfaI GTAC 3 cut(s) 53, 235, 660
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 2 cut(s) 179, 649
AhlI ACTAGT 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AloI GAACNNNNNNTCC 2 cut(s) 426, 458
AluBI AGCT 6 cut(s) 68, 99, 131, 182, 243, 559
AluI AGCT 6 cut(s) 68, 99, 131, 182, 243, 559
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 5 cut(s) 156, 162, 266, 386, 509
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 4 cut(s) 4, 58, 174, 529
Asp718I GGTACC 1 cut(s) 51
AspS9I GGNCC 4 cut(s) 163, 266, 298, 386
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 4 cut(s) 134, 200, 269, 403
AvaI CYCGRG 1 cut(s) 611
AvaII GGWCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 217, 249
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 149, 365
BceAI ACGGC 1 cut(s) 171
BcnI CCSGG 1 cut(s) 10
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 611
BmgT120I GGNCC 4 cut(s) 163, 266, 298, 386
BmiI GGNNCC 2 cut(s) 53, 377
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 616
BoxI GACNNNNGTC 1 cut(s) 89
BplI GAGNNNNNCTC 2 cut(s) 430, 462
Bpu10I CCTNAGC 2 cut(s) 64, 183
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 3 cut(s) 153, 159, 632
BsaWI WCCGGW 1 cut(s) 534
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 647
BseDI CCNNGG 3 cut(s) 153, 159, 632
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 1 cut(s) 647
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 5 cut(s) 158, 164, 268, 388, 511
BshNI GGYRCC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 2 cut(s) 10, 535
BslI CCNNNNNNNGG 1 cut(s) 420
BsnI GGCC 5 cut(s) 158, 164, 268, 388, 511
BsoBI CYCGRG 1 cut(s) 611
Bsp1407I TGTACA 1 cut(s) 233
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 632
BspANI GGCC 5 cut(s) 158, 164, 268, 388, 511
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 53, 377
BspMI ACCTGC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 647
BsrGI TGTACA 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 153, 159, 632
BssMI GATC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 159, 632
Bst6I CTCTTC 1 cut(s) 220
BstAUI TGTACA 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 64, 183
BstDSI CCRYGG 2 cut(s) 153, 632
BstEII GGTNACC 1 cut(s) 275
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstPAI GACNNNNGTC 1 cut(s) 89
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 118
BsuRI GGCC 5 cut(s) 158, 164, 268, 388, 511
BtgI CCRYGG 2 cut(s) 153, 632
BtsCI GGATG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 79
Cfr13I GGNCC 4 cut(s) 163, 266, 298, 386
CseI GACGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 52, 234, 659
CviAII CATG 3 cut(s) 418, 606, 633
CviQI GTAC 3 cut(s) 52, 234, 659
DdeI CTNAG 2 cut(s) 64, 183
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 2 cut(s) 156, 509
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 159, 632
Eco47I GGWCC 1 cut(s) 298
Eco88I CYCGRG 1 cut(s) 611
Eco91I GGTNACC 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 275
EcoRI GAATTC 2 cut(s) 4, 58
EcoT14I CCWWGG 2 cut(s) 159, 632
ErhI CCWWGG 2 cut(s) 159, 632
FaeI CATG 3 cut(s) 421, 609, 636
FatI CATG 3 cut(s) 417, 605, 632
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 401
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 5 cut(s) 158, 164, 268, 388, 511
HapII CCGG 2 cut(s) 10, 535
HgaI GACGC 1 cut(s) 94
Hin1II CATG 3 cut(s) 421, 609, 636
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HpaII CCGG 2 cut(s) 10, 535
HphI GGTGA 4 cut(s) 134, 200, 269, 403
Hpy166II GTNNAC 2 cut(s) 234, 571
Hpy188III TCNNGA 2 cut(s) 315, 494
Hpy8I GTNNAC 2 cut(s) 234, 571
HpyAV CCTTC 2 cut(s) 491, 677
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 328, 365, 520
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 2 cut(s) 64, 183
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 3 cut(s) 421, 609, 636
KpnI GGTACC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 2 cut(s) 564, 634
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 616
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 9 cut(s) 203, 209, 215, 237, 314, 470, 470, 568, 635
MfeI CAATTG 2 cut(s) 217, 366
MnlI CCTC 6 cut(s) 283, 290, 456, 494, 543, 572
MseI TTAA 3 cut(s) 81, 209, 666
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 2 cut(s) 10, 535
MspR9I CCNGG 1 cut(s) 10
MunI CAATTG 2 cut(s) 217, 366
MwoI GCNNNNNNNGC 1 cut(s) 517
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 632
NdeII GATC 1 cut(s) 213
NlaIII CATG 3 cut(s) 421, 609, 636
NlaIV GGNNCC 2 cut(s) 53, 377
NmuCI GTSAC 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 611
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 1 cut(s) 133
PshAI GACNNNNGTC 1 cut(s) 89
PspEI GGTNACC 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 53, 377
PspPI GGNCC 4 cut(s) 163, 266, 298, 386
PspXI VCTCGAGB 1 cut(s) 611
RsaI GTAC 3 cut(s) 53, 235, 660
RsaNI GTAC 3 cut(s) 52, 234, 659
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 3 cut(s) 81, 209, 666
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 4 cut(s) 163, 266, 298, 386
ScrFI CCNGG 1 cut(s) 10
SfaNI GCATC 1 cut(s) 616
Sfr274I CTCGAG 1 cut(s) 611
SinI GGWCC 1 cut(s) 298
SlaI CTCGAG 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 611
SmoI CTYRAG 1 cut(s) 611
SpeI ACTAGT 1 cut(s) 400
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 2 cut(s) 159, 632
TaiI ACGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 612
TaqII GACCGA 1 cut(s) 315
TatI WGTACW 2 cut(s) 233, 658
Tru1I TTAA 3 cut(s) 81, 209, 666
Tru9I TTAA 3 cut(s) 81, 209, 666
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 4 cut(s) 17, 62, 210, 216
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 4 cut(s) 4, 58, 174, 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 639
XhoI CTCGAG 1 cut(s) 611
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.