Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001809.1

Orthogroup ID

OG0016770

Physical Location & Seq

Genomic Coordinates Reverse (-)

170346 .. 172347

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001809.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgtttaggttgtggaaatggtaccagaattgcttggcgtctcacccagttaagacacaggtcattagctctggtttgatttggggggttggtgatatagctgcccagaccatcactcactccacagccaacaagcacaatcagattcaaactcatcagggagaagatgaagagttgaagatcaattggagaagagtgactaaaaccagcttgtttggatttggattcgttgggccagttggtcacctctggtatgaaggtttggatcgatatataaaatcacgacttctactgaaacagaactcatttcggtttgttgctactaaagttgcgattgatgggtttctttttgggccattggatttacttgtatttttcacttacatgggttttgctgctggaaagagtgttcctcaaatcaaggaagatgtaaaaagggattttctccctgcctttgttcttgaagggggtatatggccaattgtgcaagtagtgaatttccgatttgtacctgttaggtatcaactcctctatgtcaacttcttctgcttgttggatagctcttttctgtcatggctcgagcaacaggaggatgctccatggaaacaatggttgaaatcttgcttaagttttagtgaacaaaaaggcaaaggtgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

219

Amino Acids

25.28

Weight (kDa)

9.24

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016770)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36140
malus_domestica	MD15G1098000.v1.1
prunus_persica	Prupe.1G452800_v2.0.a1 Prupe.1G452800_v2.0.a1
pyrus_communis	pycom15g08980
rosa_chinensis	RchiOBHm_Chr6g0305731
rosa_laevigata	RLG00000010864
rosa_multiflora	Rmu_sc0001809.1_g000038
rosa_rugosa	Rorug06G0343600
rosa_samantha	Rh6AG455100 Rh6BG446300 Rh6CG469000 Rh6DG455600
rosa_wichuraiana	Rw6G039700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	476
AcsI	RAATTY	1 cut(s)	496
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	23, 510
AflII	CTTAAG	1 cut(s)	625
AgsI	TTSAA	4 cut(s)	149, 178, 464, 616
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
AluBI	AGCT	4 cut(s)	69, 101, 210, 561
AluI	AGCT	4 cut(s)	69, 101, 210, 561
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	233, 353, 476
ApeKI	GCWGC	2 cut(s)	101, 395
ApoI	RAATTY	1 cut(s)	496
Asp718I	GGTACC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	233, 353
AsuHPI	GGTGA	3 cut(s)	35, 104, 236
AvaI	CYCGRG	1 cut(s)	578
BalI	TGGCCA	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	88, 382
BccI	CCATC	2 cut(s)	119, 332
BcoDI	GTCTC	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	625
BisI	GCNGC	2 cut(s)	102, 396
BlsI	GCNGC	2 cut(s)	103, 397
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	233, 353
BmiI	GGNNCC	1 cut(s)	23
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	583
BmuI	ACTGGG	1 cut(s)	41
BoxI	GACNNNNGTC	1 cut(s)	59
BplI	GAGNNNNNCTC	2 cut(s)	397, 429
Bsa29I	ATCGAT	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	599
Bse1I	ACTGG	2 cut(s)	47, 236
BseCI	ATCGAT	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	1 cut(s)	598
BseNI	ACTGG	2 cut(s)	47, 236
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	88, 382
BshFI	GGCC	3 cut(s)	235, 355, 478
BshNI	GGYRCC	1 cut(s)	21
BshVI	ATCGAT	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	578
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsnI	GGCC	3 cut(s)	235, 355, 478
BsoBI	CYCGRG	1 cut(s)	578
Bsp143I	GATC	2 cut(s)	180, 265
Bsp19I	CCATGG	1 cut(s)	599
BspANI	GGCC	3 cut(s)	235, 355, 478
BspDI	ATCGAT	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	625
BsrI	ACTGG	2 cut(s)	47, 236
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	2 cut(s)	180, 265
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	599
Bst6I	CTCTTC	2 cut(s)	165, 187
BstACI	GRCGYC	1 cut(s)	38
BstAFI	CTTAAG	1 cut(s)	625
BstDSI	CCRYGG	1 cut(s)	599
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	598
BstKTI	GATC	2 cut(s)	183, 268
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	180, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstPAI	GACNNNNGTC	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	88, 382
Bsu15I	ATCGAT	1 cut(s)	268
BsuRI	GGCC	3 cut(s)	235, 355, 478
BsuTUI	ATCGAT	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	233, 353
ClaI	ATCGAT	1 cut(s)	268
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	22, 509
CviAII	CATG	3 cut(s)	385, 573, 600
CviJI	RGCY	9 cut(s)	69, 101, 128, 210, 235, 355, 478, 561, 577
CviKI_1	RGCY	9 cut(s)	69, 101, 128, 210, 235, 355, 478, 561, 577
CviQI	GTAC	2 cut(s)	22, 509
DpnI	GATC	2 cut(s)	182, 267
DpnII	GATC	2 cut(s)	180, 265
EaeI	YGGCCR	1 cut(s)	476
Eam1104I	CTCTTC	2 cut(s)	165, 187
EarI	CTCTTC	2 cut(s)	165, 187
Eco130I	CCWWGG	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	578
Eco91I	GGTNACC	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	388, 576, 603
FatI	CATG	3 cut(s)	384, 572, 599
Fnu4HI	GCNGC	2 cut(s)	102, 396
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	2 cut(s)	102, 396
GluI	GCNGC	2 cut(s)	102, 396
HaeIII	GGCC	3 cut(s)	235, 355, 478
HgaI	GACGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	388, 576, 603
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	2 cut(s)	145, 225
HphI	GGTGA	3 cut(s)	35, 104, 236
Hpy166II	GTNNAC	2 cut(s)	538, 638
Hpy188I	TCNGA	2 cut(s)	144, 503
Hpy188III	TCNNGA	2 cut(s)	282, 461
Hpy8I	GTNNAC	2 cut(s)	538, 638
HpyAV	CCTTC	2 cut(s)	251, 458
HpyCH4V	TGCA	1 cut(s)	487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	388, 576, 603
KpnI	GGTACC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	180, 265
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	2 cut(s)	88, 382
LweI	GCATC	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	196, 242
MalI	GATC	2 cut(s)	182, 267
MboI	GATC	2 cut(s)	180, 265
MboII	GAAGA	6 cut(s)	176, 182, 190, 204, 437, 535
MfeI	CAATTG	2 cut(s)	184, 480
MlsI	TGGCCA	1 cut(s)	478
MluCI	AATT	4 cut(s)	28, 184, 480, 496
MluNI	TGGCCA	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	4 cut(s)	257, 423, 539, 583
Mox20I	TGGCCA	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	478
MseI	TTAA	2 cut(s)	51, 626
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	478
MspCI	CTTAAG	1 cut(s)	625
MunI	CAATTG	2 cut(s)	184, 480
MwoI	GCNNNNNNNGC	1 cut(s)	484
NcoI	CCATGG	1 cut(s)	599
NdeII	GATC	2 cut(s)	180, 265
NlaIII	CATG	3 cut(s)	388, 576, 603
NlaIV	GGNNCC	1 cut(s)	23
NmuCI	GTSAC	2 cut(s)	196, 242
PaeR7I	CTCGAG	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	145, 225
PkrI	GCNGC	2 cut(s)	103, 397
PshAI	GACNNNNGTC	1 cut(s)	59
PspEI	GGTNACC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	23
PspPI	GGNCC	2 cut(s)	233, 353
PspXI	VCTCGAGB	1 cut(s)	578
RsaI	GTAC	2 cut(s)	23, 510
RsaNI	GTAC	2 cut(s)	22, 509
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	51, 626
SatI	GCNGC	2 cut(s)	102, 396
Sau3AI	GATC	2 cut(s)	180, 265
Sau96I	GGNCC	2 cut(s)	233, 353
SfaNI	GCATC	1 cut(s)	583
Sfr274I	CTCGAG	1 cut(s)	578
SlaI	CTCGAG	1 cut(s)	578
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	578, 625
SmoI	CTYRAG	2 cut(s)	578, 625
Sse9I	AATT	4 cut(s)	28, 184, 480, 496
StyI	CCWWGG	1 cut(s)	599
TaqI	TCGA	2 cut(s)	268, 579
TasI	AATT	4 cut(s)	28, 184, 480, 496
TfiI	GAWTC	2 cut(s)	145, 225
Tru1I	TTAA	2 cut(s)	51, 626
Tru9I	TTAA	2 cut(s)	51, 626
TseFI	GTSAC	2 cut(s)	196, 242
TseI	GCWGC	2 cut(s)	101, 395
Tsp45I	GTSAC	2 cut(s)	196, 242
TspDTI	ATGAA	2 cut(s)	183, 270
Vha464I	CTTAAG	1 cut(s)	625
XapI	RAATTY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	606
XhoI	CTCGAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.