Rh6DG455600

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0016770
Physical Location & Seq
Reverse (-)
62681934 .. 62683960
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG455600.1

Sequence Viewer

Length: 660 bp
ATGTTTAGGTTGTGGAAATGTTACCAGAATTGCTTGGCGTCTCACCCAGTTAAGACACAGGTCATTAGCTCTGGTTTGATTTGGGGGCTTGGTGATATAGCTGCCCAGACCATCACTCACTCCACAGCCAACAAGCACAATCAAATTCAAACTCATCAGGGAGGAGATGAAGAGTTGAAGATCAATTGGAGAAGAGTGACTAAAACCAGCTTGTTTGGATTTGGATTTGTTGGGCCAGTTGGTCACCTCTGGTATGAAGGTTTGGATCGATATATAAAATCACGACTTCTACTGAAACAGAACTCATTTCGGTTTGTTGCTACTAAAGTTGCGATTGATGGGTTTCTTTTTGGGCCATTGGATTTACTTGTATTTTTCACTTACATGGGTTTTGCTGCTGGAAAGAGTGTTCCTCAAATCAAGGAAGATGTAAAAAGGGATTTTCTCCCGGCCTTTGTTCTTGAAGGAGGCATATGGCCAATTGTGCAAGTAGTGAATTTCCGATTTGTACCTGTTAGGTATCAACTCCTCTATGTCAACTTCTTCTGCTTGTTGGATAGCTCTTTTCTGTCATGGCTCGAGCAACAGGAGGATGCTCCATGGAAACAATGGTTGAAATCTTGCTTAAGTTTTAGTGAACAAAAAGGCAAAGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

219

Amino Acids

25.13

Weight (kDa)

9.28

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 131 - 191 1.6e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016770)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36140
malus_domestica MD15G1098000.v1.1
prunus_persica Prupe.1G452800_v2.0.a1 Prupe.1G452800_v2.0.a1
pyrus_communis pycom15g08980
rosa_chinensis RchiOBHm_Chr6g0305731
rosa_laevigata RLG00000010864
rosa_multiflora Rmu_sc0001809.1_g000038
rosa_rugosa Rorug06G0343600
rosa_samantha Rh6AG455100 Rh6BG446300 Rh6CG469000 Rh6DG455600
rosa_wichuraiana Rw6G039700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 273
AcoI YGGCCR 1 cut(s) 476
AcsI RAATTY 2 cut(s) 144, 496
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 510
AflII CTTAAG 1 cut(s) 625
AgsI TTSAA 4 cut(s) 149, 178, 464, 616
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 4 cut(s) 69, 101, 210, 561
AluI AGCT 4 cut(s) 69, 101, 210, 561
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 4 cut(s) 233, 353, 450, 476
ApeKI GCWGC 2 cut(s) 101, 395
ApoI RAATTY 2 cut(s) 144, 496
AspS9I GGNCC 2 cut(s) 233, 353
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 35, 104, 236
AvaI CYCGRG 1 cut(s) 578
BalI TGGCCA 1 cut(s) 478
BbvI GCAGC 2 cut(s) 88, 382
BccI CCATC 2 cut(s) 119, 332
BcnI CCSGG 1 cut(s) 449
BcoDI GTCTC 1 cut(s) 45
BfrI CTTAAG 1 cut(s) 625
BisI GCNGC 2 cut(s) 102, 396
BlsI GCNGC 2 cut(s) 103, 397
Bme1390I CCNGG 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 233, 353
BmrFI CCNGG 1 cut(s) 449
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 583
BmuI ACTGGG 1 cut(s) 41
BoxI GACNNNNGTC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 397, 429
BpuMI CCSGG 1 cut(s) 449
Bsa29I ATCGAT 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 599
Bse1I ACTGG 2 cut(s) 47, 236
BseCI ATCGAT 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 599
BseGI GGATG 1 cut(s) 598
BseNI ACTGG 2 cut(s) 47, 236
BseRI GAGGAG 2 cut(s) 177, 518
BseXI GCAGC 2 cut(s) 88, 382
BshFI GGCC 4 cut(s) 235, 355, 452, 478
BshVI ATCGAT 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 4 cut(s) 235, 355, 452, 478
BsoBI CYCGRG 1 cut(s) 578
Bsp143I GATC 2 cut(s) 180, 265
Bsp19I CCATGG 1 cut(s) 599
BspANI GGCC 4 cut(s) 235, 355, 452, 478
BspDI ATCGAT 1 cut(s) 268
BspPI GGATC 1 cut(s) 273
BspTI CTTAAG 1 cut(s) 625
BsrI ACTGG 2 cut(s) 47, 236
BssECI CCNNGG 1 cut(s) 599
BssMI GATC 2 cut(s) 180, 265
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 599
Bst6I CTCTTC 2 cut(s) 165, 187
BstACI GRCGYC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 625
BstDSI CCRYGG 1 cut(s) 599
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 1 cut(s) 598
BstKTI GATC 2 cut(s) 183, 268
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 180, 265
BstMWI GCNNNNNNNGC 1 cut(s) 484
BstPAI GACNNNNGTC 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 88, 382
Bsu15I ATCGAT 1 cut(s) 268
BsuRI GGCC 4 cut(s) 235, 355, 452, 478
BsuTUI ATCGAT 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 599
BtsCI GGATG 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 233, 353
ClaI ATCGAT 1 cut(s) 268
CseI GACGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 509
CviAII CATG 3 cut(s) 385, 573, 600
CviQI GTAC 1 cut(s) 509
DpnI GATC 2 cut(s) 182, 267
DpnII GATC 2 cut(s) 180, 265
EaeI YGGCCR 1 cut(s) 476
Eam1104I CTCTTC 2 cut(s) 165, 187
EarI CTCTTC 2 cut(s) 165, 187
Eco130I CCWWGG 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 578
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 599
ErhI CCWWGG 1 cut(s) 599
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 3 cut(s) 388, 576, 603
FatI CATG 3 cut(s) 384, 572, 599
FauNDI CATATG 1 cut(s) 473
Fnu4HI GCNGC 2 cut(s) 102, 396
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 2 cut(s) 102, 396
GluI GCNGC 2 cut(s) 102, 396
HaeIII GGCC 4 cut(s) 235, 355, 452, 478
HapII CCGG 1 cut(s) 449
HgaI GACGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 3 cut(s) 388, 576, 603
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HpaII CCGG 1 cut(s) 449
HphI GGTGA 3 cut(s) 35, 104, 236
Hpy166II GTNNAC 2 cut(s) 538, 638
Hpy188I TCNGA 1 cut(s) 503
Hpy188III TCNNGA 2 cut(s) 282, 461
Hpy8I GTNNAC 2 cut(s) 538, 638
HpyAV CCTTC 2 cut(s) 251, 458
HpyCH4V TGCA 1 cut(s) 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 484
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 3 cut(s) 388, 576, 603
Kzo9I GATC 2 cut(s) 180, 265
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 2 cut(s) 88, 382
LweI GCATC 1 cut(s) 583
MaeIII GTNAC 3 cut(s) 20, 196, 242
MalI GATC 2 cut(s) 182, 267
MboI GATC 2 cut(s) 180, 265
MboII GAAGA 5 cut(s) 182, 190, 204, 437, 535
MfeI CAATTG 2 cut(s) 184, 480
MlsI TGGCCA 1 cut(s) 478
MluCI AATT 5 cut(s) 28, 144, 184, 480, 496
MluNI TGGCCA 1 cut(s) 478
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 6 cut(s) 155, 257, 423, 461, 539, 583
Mox20I TGGCCA 1 cut(s) 478
MscI TGGCCA 1 cut(s) 478
MseI TTAA 2 cut(s) 51, 626
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 478
MspCI CTTAAG 1 cut(s) 625
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 449
MunI CAATTG 2 cut(s) 184, 480
MwoI GCNNNNNNNGC 1 cut(s) 484
NciI CCSGG 1 cut(s) 449
NcoI CCATGG 1 cut(s) 599
NdeI CATATG 1 cut(s) 473
NdeII GATC 2 cut(s) 180, 265
NlaIII CATG 3 cut(s) 388, 576, 603
NmuCI GTSAC 2 cut(s) 196, 242
PaeR7I CTCGAG 1 cut(s) 578
PkrI GCNGC 2 cut(s) 103, 397
PshAI GACNNNNGTC 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 242
PspPI GGNCC 2 cut(s) 233, 353
PspXI VCTCGAGB 1 cut(s) 578
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 2 cut(s) 51, 626
SatI GCNGC 2 cut(s) 102, 396
Sau3AI GATC 2 cut(s) 180, 265
Sau96I GGNCC 2 cut(s) 233, 353
ScrFI CCNGG 1 cut(s) 449
SfaNI GCATC 1 cut(s) 583
Sfr274I CTCGAG 1 cut(s) 578
SlaI CTCGAG 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 2 cut(s) 578, 625
SmoI CTYRAG 2 cut(s) 578, 625
Sse9I AATT 5 cut(s) 28, 144, 184, 480, 496
StyD4I CCNGG 1 cut(s) 447
StyI CCWWGG 1 cut(s) 599
TaqI TCGA 2 cut(s) 268, 579
TasI AATT 5 cut(s) 28, 144, 184, 480, 496
Tru1I TTAA 2 cut(s) 51, 626
Tru9I TTAA 2 cut(s) 51, 626
TseFI GTSAC 2 cut(s) 196, 242
TseI GCWGC 2 cut(s) 101, 395
Tsp45I GTSAC 2 cut(s) 196, 242
TspDTI ATGAA 2 cut(s) 183, 270
Vha464I CTTAAG 1 cut(s) 625
XapI RAATTY 2 cut(s) 144, 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.