FvH4_2g36320

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
26609929 .. 26611410
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36320.t1

Sequence Viewer

Length: 1482 bp
ATGGTGGATGTGTGCGACTACAGTGGCAATGTGAACTATGCTAGCTTGCTATTCAAGCAAGTTCTTGAGCCAAATGTGTTCCTTTTCAATGCGATGATCCGAGCTTATACGCATAACTATGTCTATGATTCAGCAATAGCTTTGTATAAGCAAATGCTGAGACACCCAGAATCTGAAACCCTAATTTTCCCAGACAAATTCACATTCCCATTTGTGATAAAATGTTGTGCAGGGCTAGGTTGTGAAGATTTGGGGAGGCAGGTTCATGGTCAAGTGTGGAAATTTGGGCCTGGGTCGCATTTGCTGATTGAGAATGCATTGATGGCTTTTTATACCAAGTGTGATAATTTGAGGGATGCACATAAGGTGTTTGATGAAATGACTGAGAGAGATGTGATTTCTTGGAATAGTCTTCTTAGTGGTTATGTTAGGTTGGGGCAGATGACGAAAGCGAGAGCAGTGTTTGAGGAGATGAGTGATAAGAGTATTGTGTCTTGGACGGCGATGGTTTCGGGGTACACTCGGATCGGGTGTTACGGGGATGCTTTGGAGATTTTTCGACGAATGCAGATGCTGGGTATCGAACCTGATGAGATCAGTGTTGTGTCGGTTTTGCCGGCGTGCTCGCAGCTTGGAGCTCTTGAGGTTGGGAAGTGGATTCACAGGTACTCGGATAAGAAGCGACTGCTACAGTCGGTCTCGGTGTGCAATGCTTTGATTGAAATGTATGTGAAATGTGGCTGCATCGATCAAGCTTGGCAGTTGTTTGATCAGATGTCGGGGAGGGATGTGATATCTTGGAGTACCATGATTGCAGGGCTGGCGAATAATGGTAAAGCTCACGAAGCAGTTGAGCTGTTTCAGGAGATGCAGAGAGTGAAGACTGAACCTAATGGGATTACATTTCTTGGTGTTTTATCAGCCTGCAGCCATGCTGGTTTATGGAAGGAGGGACTCAAGTATTTTGACTCTATGAGGGAGGGGTGTACGATTGAGCCAGGAATTGAGCATTATGGTTGTTTAGTTGATCTTCTGGGACGTGCTGGACACCTTGATCAGGCTCTCGACAAGATAAAGCAGATGCCAATGAAGCCAGACTCAAAGATTTGGGGCTCCTTGTTAAGCTCTTGCAGGACTTTTTGCAATCTTGAGATTGCTCTCATCGCAATGGAGCAACTTCAAGATCTTGAACCGGATGATGCAGGGAACTATGTGTTACTTTCCAATATATATGCAGACCTGGGGAAGTGGGAGGATGTGTCCAGGATGAGGAAACTGATACGAAGCAAAAGCATGAAGAAAACCCCAGGTTGCAGTTTGATTGAGGTTAACAATGTAGTTTTAGAATTCGTATCAGGGGATGACACAAAACCATTTGCAAAAGACATCTTTTCTATGCTACAGCTGCTGGTTGCACACCAAAGCATGCCAGGTGAGAGCATTGAAGCTGTGCCAGAGGACTGCAGTCAAATACTGTGCTAA

Protein Analysis

494

Amino Acids

55.4

Weight (kDa)

5.41

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 130 - 163 3.4e-07 PPR repeat family
PPR PF01535 133 - 162 2.6e-07 PPR repeat
PPR_2 PF13041 162 - 208 7.1e-07 PPR repeat family
PPR PF01535 164 - 194 7.8e-07 PPR repeat
PPR_2 PF13041 232 - 262 6e-06 PPR repeat family
PPR_2 PF13041 262 - 310 8.9e-11 PPR repeat family
PPR_1 PF12854 263 - 291 2e-06 PPR repeat
PPR PF01535 265 - 292 2.1e-07 PPR repeat
E_motif PF20431 381 - 442 1.4e-22 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014514)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AclWI GGATC 2 cut(s) 91, 533
AcsI RAATTY 3 cut(s) 197, 281, 1346
AfaI GTAC 4 cut(s) 518, 668, 805, 988
AfiI CCNNNNNNNGG 2 cut(s) 1057, 1269
AgsI TTSAA 6 cut(s) 55, 88, 722, 1181, 1190, 1445
AjiI CACGTC 1 cut(s) 1040
AjnI CCWGG 6 cut(s) 289, 997, 1239, 1262, 1306, 1429
Alw21I GWGCWC 2 cut(s) 626, 640
Alw26I GTCTC 2 cut(s) 154, 703
AlwI GGATC 2 cut(s) 91, 533
AlwNI CAGNNNCTG 3 cut(s) 173, 574, 1408
AoxI GGCC 1 cut(s) 287
ApeKI GCWGC 4 cut(s) 628, 741, 927, 1405
ApoI RAATTY 3 cut(s) 197, 281, 1346
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 1445
AsuNHI GCTAGC 1 cut(s) 41
BanII GRGCYC 2 cut(s) 640, 1115
BbsI GAAGAC 2 cut(s) 404, 887
Bbv12I GWGCWC 2 cut(s) 626, 640
BbvI GCAGC 4 cut(s) 640, 728, 939, 1392
BccI CCATC 2 cut(s) 316, 499
BceAI ACGGC 1 cut(s) 516
BciT130I CCWGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
BclI TGATCA 2 cut(s) 769, 1054
BcoDI GTCTC 2 cut(s) 154, 703
BfaI CTAG 2 cut(s) 42, 236
BfmI CTRYAG 5 cut(s) 19, 689, 925, 1400, 1462
BfuAI ACCTGC 1 cut(s) 250
BglII AGATCT 1 cut(s) 1183
BisI GCNGC 4 cut(s) 629, 742, 928, 1406
BlsI GCNGC 4 cut(s) 630, 743, 929, 1407
Bme1390I CCNGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
BmgBI CACGTC 1 cut(s) 1040
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 1114
BmrFI CCNGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
BmsI GCATC 7 cut(s) 346, 532, 561, 753, 858, 1071, 1189
BmtI GCTAGC 1 cut(s) 45
BoxI GACNNNNGTC 1 cut(s) 1464
BpiI GAAGAC 2 cut(s) 404, 887
BpuEI CTTGAG 4 cut(s) 86, 662, 941, 1169
Bsa29I ATCGAT 1 cut(s) 747
BsaI GGTCTC 1 cut(s) 703
BsaJI CCNNGG 3 cut(s) 290, 1240, 1306
BsaWI WCCGGW 1 cut(s) 1192
BsaXI ACNNNNNCTCC 2 cut(s) 1244, 1274
Bsc4I CCNNNNNNNGG 2 cut(s) 1057, 1269
Bse118I RCCGGY 1 cut(s) 616
Bse3DI GCAATG 3 cut(s) 34, 715, 1173
BseBI CCWGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 3 cut(s) 290, 1240, 1306
BseGI GGATG 8 cut(s) 13, 361, 547, 793, 1201, 1261, 1272, 1366
BseLI CCNNNNNNNGG 2 cut(s) 1057, 1269
BseMI GCAATG 3 cut(s) 34, 715, 1173
BseMII CTCAG 2 cut(s) 149, 375
BseRI GAGGAG 1 cut(s) 482
BseXI GCAGC 4 cut(s) 640, 728, 939, 1392
BseYI CCCAGC 1 cut(s) 574
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 289
BshVI ATCGAT 1 cut(s) 747
BsiHKAI GWGCWC 2 cut(s) 626, 640
BsiSI CCGG 2 cut(s) 617, 1193
BslFI GGGAC 2 cut(s) 966, 1050
BslI CCNNNNNNNGG 2 cut(s) 1057, 1269
BsmAI GTCTC 2 cut(s) 154, 703
BsmFI GGGAC 2 cut(s) 966, 1050
BsmI GAATGC 2 cut(s) 319, 570
BsnI GGCC 1 cut(s) 289
Bso31I GGTCTC 1 cut(s) 703
Bsp1286I GDGCHC 3 cut(s) 626, 640, 1115
Bsp143I GATC 8 cut(s) 96, 525, 594, 748, 769, 1027, 1054, 1183
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 150, 376
BspDI ATCGAT 1 cut(s) 747
BspLI GGNNCC 1 cut(s) 1114
BspMAI CTGCAG 2 cut(s) 929, 1466
BspMI ACCTGC 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 45
BspPI GGATC 2 cut(s) 91, 533
BspTNI GGTCTC 1 cut(s) 703
BsrDI GCAATG 3 cut(s) 34, 715, 1173
BsrFI RCCGGY 1 cut(s) 616
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 3 cut(s) 290, 1240, 1306
BssMI GATC 8 cut(s) 96, 525, 594, 748, 769, 1027, 1054, 1183
Bst2UI CCWGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
Bst4CI ACNGT 3 cut(s) 23, 693, 1476
BstC8I GCNNGC 8 cut(s) 43, 47, 618, 622, 626, 822, 925, 1427
BstDEI CTNAG 3 cut(s) 158, 384, 416
BstENI CCTNNNNNAGG 1 cut(s) 1055
BstF5I GGATG 8 cut(s) 13, 361, 547, 793, 1201, 1261, 1272, 1366
BstKTI GATC 8 cut(s) 99, 528, 597, 751, 772, 1030, 1057, 1186
BstMAI GTCTC 2 cut(s) 154, 703
BstMBI GATC 8 cut(s) 96, 525, 594, 748, 769, 1027, 1054, 1183
BstMWI GCNNNNNNNGC 8 cut(s) 55, 295, 323, 821, 845, 1090, 1163, 1405
BstNI CCWGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
BstNSI RCATGY 1 cut(s) 1429
BstPAI GACNNNNGTC 1 cut(s) 1464
BstSCI CCNGG 6 cut(s) 289, 997, 1239, 1262, 1306, 1429
BstSFI CTRYAG 5 cut(s) 19, 689, 925, 1400, 1462
BstV1I GCAGC 4 cut(s) 640, 728, 939, 1392
BstV2I GAAGAC 2 cut(s) 404, 887
BstX2I RGATCY 1 cut(s) 1183
BstYI RGATCY 1 cut(s) 1183
Bsu15I ATCGAT 1 cut(s) 747
BsuRI GGCC 1 cut(s) 289
BsuTUI ATCGAT 1 cut(s) 747
BtgZI GCGATG 3 cut(s) 107, 518, 1147
BtrI CACGTC 1 cut(s) 1040
BtsCI GGATG 8 cut(s) 13, 361, 547, 793, 1201, 1261, 1272, 1366
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 3 cut(s) 28, 465, 604
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 8 cut(s) 43, 47, 618, 622, 626, 822, 925, 1427
CaiI CAGNNNCTG 3 cut(s) 173, 574, 1408
Cfr10I RCCGGY 1 cut(s) 616
Cfr13I GGNCC 1 cut(s) 287
ClaI ATCGAT 1 cut(s) 747
Csp6I GTAC 4 cut(s) 517, 667, 804, 987
CviAII CATG 5 cut(s) 266, 808, 932, 1294, 1426
CviQI GTAC 4 cut(s) 517, 667, 804, 987
DdeI CTNAG 3 cut(s) 158, 384, 416
DpnI GATC 8 cut(s) 98, 527, 596, 750, 771, 1029, 1056, 1185
DpnII GATC 8 cut(s) 96, 525, 594, 748, 769, 1027, 1054, 1183
Ecl136II GAGCTC 1 cut(s) 638
Eco24I GRGCYC 2 cut(s) 640, 1115
Eco31I GGTCTC 1 cut(s) 703
Eco32I GATATC 1 cut(s) 795
Eco53kI GAGCTC 1 cut(s) 638
EcoICRI GAGCTC 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 1055
EcoRI GAATTC 1 cut(s) 1346
EcoRII CCWGG 6 cut(s) 289, 997, 1239, 1262, 1306, 1429
EcoRV GATATC 1 cut(s) 795
EcoT22I ATGCAT 1 cut(s) 319
EcoT38I GRGCYC 2 cut(s) 640, 1115
FaeI CATG 5 cut(s) 269, 811, 935, 1297, 1429
FaqI GGGAC 2 cut(s) 966, 1050
FatI CATG 5 cut(s) 265, 807, 931, 1293, 1425
FbaI TGATCA 2 cut(s) 769, 1054
Fnu4HI GCNGC 4 cut(s) 629, 742, 928, 1406
FokI GGATG 8 cut(s) 20, 368, 554, 800, 1208, 1268, 1279, 1373
FriOI GRGCYC 2 cut(s) 640, 1115
Fsp4HI GCNGC 4 cut(s) 629, 742, 928, 1406
FspBI CTAG 2 cut(s) 42, 236
GluI GCNGC 4 cut(s) 629, 742, 928, 1406
GsaI CCCAGC 1 cut(s) 578
HaeIII GGCC 1 cut(s) 289
HapII CCGG 2 cut(s) 617, 1193
Hin1II CATG 5 cut(s) 269, 811, 935, 1297, 1429
HincII GTYRAC 1 cut(s) 1330
HindII GTYRAC 1 cut(s) 1330
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 6 cut(s) 128, 170, 658, 954, 968, 1097
HpaI GTTAAC 1 cut(s) 1330
HpaII CCGG 2 cut(s) 617, 1193
HphI GGTGA 1 cut(s) 1445
Hpy166II GTNNAC 4 cut(s) 34, 519, 987, 1330
Hpy188I TCNGA 5 cut(s) 101, 175, 525, 673, 774
Hpy188III TCNNGA 8 cut(s) 65, 641, 842, 863, 1064, 1148, 1181, 1187
Hpy8I GTNNAC 4 cut(s) 34, 519, 987, 1330
Hpy99I CGWCG 1 cut(s) 564
HpyAV CCTTC 1 cut(s) 940
HpyCH4III ACNGT 3 cut(s) 23, 693, 1476
HpyCH4IV ACGT 1 cut(s) 1039
HpyF10VI GCNNNNNNNGC 8 cut(s) 55, 295, 323, 821, 845, 1090, 1163, 1405
HpyF3I CTNAG 3 cut(s) 158, 384, 416
HpySE526I ACGT 1 cut(s) 1039
Hsp92II CATG 5 cut(s) 269, 811, 935, 1297, 1429
KroI GCCGGC 1 cut(s) 616
KroNI GCCGGC 1 cut(s) 618
Ksp22I TGATCA 2 cut(s) 769, 1054
KspAI GTTAAC 1 cut(s) 1330
Kzo9I GATC 8 cut(s) 96, 525, 594, 748, 769, 1027, 1054, 1183
LmnI GCTCC 3 cut(s) 635, 1118, 1171
Lsp1109I GCAGC 4 cut(s) 640, 728, 939, 1392
LweI GCATC 7 cut(s) 346, 532, 561, 753, 858, 1071, 1189
MaeI CTAG 2 cut(s) 42, 236
MaeII ACGT 1 cut(s) 1039
MaeIII GTNAC 2 cut(s) 533, 1215
MalI GATC 8 cut(s) 98, 527, 596, 750, 771, 1029, 1056, 1185
MboI GATC 8 cut(s) 96, 525, 594, 748, 769, 1027, 1054, 1183
MboII GAAGA 5 cut(s) 257, 404, 892, 1022, 1309
MflI RGATCY 1 cut(s) 1183
MhlI GDGCHC 3 cut(s) 626, 640, 1115
MluCI AATT 6 cut(s) 183, 197, 281, 346, 1002, 1346
MlyI GAGTC 3 cut(s) 948, 962, 1091
Mph1103I ATGCAT 1 cut(s) 319
MroNI GCCGGC 1 cut(s) 616
MseI TTAA 2 cut(s) 1121, 1329
MslI CAYNNNNRTG 2 cut(s) 117, 1166
MspA1I CMGCKG 1 cut(s) 1405
MspI CCGG 2 cut(s) 617, 1193
MspR9I CCNGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
Mva1269I GAATGC 2 cut(s) 319, 570
MvaI CCWGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
MwoI GCNNNNNNNGC 8 cut(s) 55, 295, 323, 821, 845, 1090, 1163, 1405
NaeI GCCGGC 1 cut(s) 618
NdeII GATC 8 cut(s) 96, 525, 594, 748, 769, 1027, 1054, 1183
NgoMIV GCCGGC 1 cut(s) 616
NheI GCTAGC 1 cut(s) 41
NlaIII CATG 5 cut(s) 269, 811, 935, 1297, 1429
NlaIV GGNNCC 1 cut(s) 1114
NsiI ATGCAT 1 cut(s) 319
NspI RCATGY 1 cut(s) 1429
PaeI GCATGC 1 cut(s) 1429
PctI GAATGC 2 cut(s) 319, 570
PdiI GCCGGC 1 cut(s) 618
PfeI GAWTC 3 cut(s) 128, 170, 658
PfoI TCCNGGA 1 cut(s) 1262
PkrI GCNGC 4 cut(s) 630, 743, 929, 1407
PleI GAGTC 3 cut(s) 948, 962, 1091
PpsI GAGTC 3 cut(s) 948, 962, 1091
PshAI GACNNNNGTC 1 cut(s) 1464
Psp124BI GAGCTC 1 cut(s) 640
Psp6I CCWGG 6 cut(s) 289, 997, 1239, 1262, 1306, 1429
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 6 cut(s) 289, 997, 1239, 1262, 1306, 1429
PspN4I GGNNCC 1 cut(s) 1114
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 2 cut(s) 929, 1466
PstNI CAGNNNCTG 3 cut(s) 173, 574, 1408
PsuI RGATCY 1 cut(s) 1183
PvuII CAGCTG 1 cut(s) 1405
RsaI GTAC 4 cut(s) 518, 668, 805, 988
RsaNI GTAC 4 cut(s) 517, 667, 804, 987
RseI CAYNNNNRTG 2 cut(s) 117, 1166
SacI GAGCTC 1 cut(s) 640
SaqAI TTAA 2 cut(s) 1121, 1329
SatI GCNGC 4 cut(s) 629, 742, 928, 1406
Sau3AI GATC 8 cut(s) 96, 525, 594, 748, 769, 1027, 1054, 1183
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 3 cut(s) 948, 962, 1091
ScrFI CCNGG 6 cut(s) 291, 999, 1241, 1264, 1308, 1431
SduI GDGCHC 3 cut(s) 626, 640, 1115
SfaNI GCATC 7 cut(s) 346, 532, 561, 753, 858, 1071, 1189
SfcI CTRYAG 5 cut(s) 19, 689, 925, 1400, 1462
SmiMI CAYNNNNRTG 2 cut(s) 117, 1166
SmlI CTYRAG 4 cut(s) 65, 641, 956, 1148
SmoI CTYRAG 4 cut(s) 65, 641, 956, 1148
SphI GCATGC 1 cut(s) 1429
Sse9I AATT 6 cut(s) 183, 197, 281, 346, 1002, 1346
SspMI CTAG 2 cut(s) 42, 236
SstI GAGCTC 1 cut(s) 640
StyD4I CCNGG 6 cut(s) 289, 997, 1239, 1262, 1306, 1429
TaaI ACNGT 3 cut(s) 23, 693, 1476
TaiI ACGT 1 cut(s) 1042
TaqI TCGA 4 cut(s) 559, 582, 747, 1065
TaqII GACCGA 1 cut(s) 685
TasI AATT 6 cut(s) 183, 197, 281, 346, 1002, 1346
TfiI GAWTC 3 cut(s) 128, 170, 658
Tru1I TTAA 2 cut(s) 1121, 1329
Tru9I TTAA 2 cut(s) 1121, 1329
TscAI CASTG 3 cut(s) 28, 465, 604
TseI GCWGC 4 cut(s) 628, 741, 927, 1405
TspDTI ATGAA 4 cut(s) 254, 390, 1103, 1310
TspRI CASTG 3 cut(s) 28, 465, 604
XagI CCTNNNNNAGG 1 cut(s) 1055
XapI RAATTY 3 cut(s) 197, 281, 1346
XceI RCATGY 1 cut(s) 1429
XspI CTAG 2 cut(s) 42, 236
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.