Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014514

Physical Location & Seq

Genomic Coordinates Reverse (-)

63883615 .. 63884643

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG453700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGAAAGGCAGGAGCAGTGTTTGAGGAAATTCCTGACAAGACTATTGTGTCTTGGACAGCAATGGTTTCAGGGTACACTCGAATCGGGTGTTATGGGGATGCTTTGGAGATTTTTCGACGAATGCAAATGCTGGGTATTGAGCCTGATGAGATCAGTGTTGTTGCTGTTTTGCCAGCATGCTCACAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCACAGGTACTCGGATAAAAAGCGGCTGCTACAGTCGGTCTCTGTGTGCAATGCCCTGATTGAAATGTATGTCAAATGCGGTTGCATTGATCAAGCTTGGCAGTTGTTTGATCAGATGTTGGAGAGGGATGTGATTTCTTGGAGTACCGTGATTGCCGGACTGGCGAATAATGGTAAAGCTCGCGAAGCAGTTGAGCTCTTTCAAGAGATGCAGAGAGCGAAAATTGAACCCAATGGGATTACATTTCTTGGTCTTTTATCAGCCTGCAGCCATGCTGGTTTATGGAAGGAGGGACTCGAGTATTTTGACTCTATGAGAGATGAGTATAAAATAGAGCCAGGAATTGAGCATTATGGTTGTTTAGTTGATCTTCTGGGACGTGCCGGGCACCTTGATCAGGCTCTCGACAAAATAAAGCAGATGCCAATGAAGCCAGACTCAAAGATTTGGGGCTCCTTGTTAAGCTCTTGCAGGACGTATTGCAATCTTGAGATTGCTCTAGTTGCAATGGAGCAACTTCAAGAGCTTGAACCAGATGATGCAGGAAACTATGTACTACTTTCCAATATATATGCAGACCTGGGGAGGTGGGAGGATGTGTCGAGGATGAGGAAACTCATAAGAAGCAAAAGCATGAAGAAAACCCCAGGTTGCAGTTTGATCGAGGTTAACAATGCAGTTTTAGAATTCGTATCAGGGGATGATACAAAACCATTTGCAAAGGACATATTTTCCATGCTAGAGCTGCTGGTTTCACACCAAAGCATACCAGATGATAACATTGAAGCTGTGTCAGAGGATTGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

342

Amino Acids

38.35

Weight (kDa)

4.93

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	15 - 61	8.2e-07	PPR repeat family
PPR	PF01535	17 - 47	4.9e-07	PPR repeat
PPR_2	PF13041	85 - 116	9.2e-07	PPR repeat family
PPR	PF01535	88 - 116	9.6e-06	PPR repeat
PPR_1	PF12854	113 - 144	3.5e-06	PPR repeat
PPR_3	PF13812	113 - 162	2.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	115 - 163	3.8e-12	PPR repeat family
PPR	PF01535	118 - 147	2.8e-07	PPR repeat
E_motif	PF20431	233 - 295	3.8e-24	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20540 AT2G20540
fragaria_vesca	FvH4_2g36320
malus_domestica	MD15G1099800.v1.1
prunus_persica	Prupe.1G454600_v2.0.a1
pyrus_communis	pycom15g09180
rosa_chinensis	RchiOBHm_Chr6g0305561
rosa_laevigata	RLG00000010877
rosa_multiflora	Rmu_co8430547.1_g000001 Rmu_sc0000841.1_g000002 Rmu_sc0001153.1_g000005
rosa_roxburghii	Rroxscaffold_7G00162590
rosa_rugosa	Rorug06G0341700
rosa_samantha	Rh6AG453700 Rh6BG447900 Rh6DG454000
rosa_wichuraiana	Rw6G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AccB1I	GGYRCC	1 cut(s)	606
AccII	CGCG	1 cut(s)	402
AciI	CCGC	2 cut(s)	241, 297
AcsI	RAATTY	2 cut(s)	30, 905
AfaI	GTAC	4 cut(s)	77, 227, 364, 774
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	6 cut(s)	281, 422, 446, 740, 749, 1004
AjiI	CACGTC	1 cut(s)	599
AjnI	CCWGG	3 cut(s)	556, 798, 865
AluBI	AGCT	9 cut(s)	190, 197, 314, 398, 415, 684, 745, 964, 1007
AluI	AGCT	9 cut(s)	190, 197, 314, 398, 415, 684, 745, 964, 1007
Alw21I	GWGCWC	2 cut(s)	199, 417
Alw26I	GTCTC	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	515
ApeKI	GCWGC	4 cut(s)	244, 486, 964, 1023
ApoI	RAATTY	2 cut(s)	30, 905
AsuC2I	CCSGG	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	609
BanI	GGYRCC	1 cut(s)	606
BanII	GRGCYC	3 cut(s)	199, 417, 674
Bbv12I	GWGCWC	2 cut(s)	199, 417
BbvI	GCAGC	4 cut(s)	231, 498, 951, 1010
BcgI	CGANNNNNNTGC	2 cut(s)	862, 896
BciT130I	CCWGG	3 cut(s)	558, 800, 867
BclI	TGATCA	3 cut(s)	307, 328, 613
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	2 cut(s)	719, 959
BfmI	CTRYAG	2 cut(s)	248, 484
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	5 cut(s)	242, 245, 487, 965, 1024
BlsI	GCNGC	5 cut(s)	243, 246, 488, 966, 1025
Bme1390I	CCNGG	4 cut(s)	558, 604, 800, 867
BmeT110I	CYCGRG	1 cut(s)	515
BmgBI	CACGTC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	608, 673
BmrFI	CCNGG	4 cut(s)	558, 604, 800, 867
BmsI	GCATC	4 cut(s)	91, 417, 630, 748
BpuEI	CTTGAG	2 cut(s)	221, 728
BpuMI	CCSGG	1 cut(s)	604
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	799, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	803, 833
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	3 cut(s)	69, 274, 732
BseBI	CCWGG	3 cut(s)	558, 800, 867
BseDI	CCNNGG	2 cut(s)	799, 865
BseGI	GGATG	5 cut(s)	106, 352, 820, 831, 925
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	3 cut(s)	69, 274, 732
BseNI	ACTGG	1 cut(s)	384
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	4 cut(s)	231, 498, 951, 1010
BseYI	CCCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	402
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	2 cut(s)	199, 417
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	2 cut(s)	375, 603
BslFI	GGGAC	2 cut(s)	525, 609
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	525, 609
BsmI	GAATGC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	4 cut(s)	199, 417, 609, 674
Bsp143I	GATC	6 cut(s)	153, 307, 328, 586, 613, 879
Bsp68I	TCGCGA	1 cut(s)	402
BspACI	CCGC	2 cut(s)	241, 297
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	608, 673
BspMAI	CTGCAG	1 cut(s)	488
BspT107I	GGYRCC	1 cut(s)	606
BspTNI	GGTCTC	1 cut(s)	262
BsrDI	GCAATG	3 cut(s)	69, 274, 732
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	799, 865
BssMI	GATC	6 cut(s)	153, 307, 328, 586, 613, 879
Bst2UI	CCWGG	3 cut(s)	558, 800, 867
Bst4CI	ACNGT	2 cut(s)	252, 367
BstC8I	GCNNGC	4 cut(s)	177, 181, 400, 484
BstENI	CCTNNNNNAGG	1 cut(s)	614
BstF5I	GGATG	5 cut(s)	106, 352, 820, 831, 925
BstFNI	CGCG	1 cut(s)	402
BstKTI	GATC	6 cut(s)	156, 310, 331, 589, 616, 882
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	6 cut(s)	153, 307, 328, 586, 613, 879
BstMWI	GCNNNNNNNGC	5 cut(s)	380, 404, 649, 722, 964
BstNI	CCWGG	3 cut(s)	558, 800, 867
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	4 cut(s)	556, 602, 798, 865
BstSFI	CTRYAG	2 cut(s)	248, 484
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	4 cut(s)	231, 498, 951, 1010
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	5 cut(s)	106, 352, 820, 831, 925
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 163
BtuMI	TCGCGA	1 cut(s)	402
Cac8I	GCNNGC	4 cut(s)	177, 181, 400, 484
Csp6I	GTAC	4 cut(s)	76, 226, 363, 773
CviAII	CATG	4 cut(s)	180, 491, 853, 955
CviQI	GTAC	4 cut(s)	76, 226, 363, 773
DpnI	GATC	6 cut(s)	155, 309, 330, 588, 615, 881
DpnII	GATC	6 cut(s)	153, 307, 328, 586, 613, 879
DrdI	GACNNNNNNGTC	1 cut(s)	49
DseDI	GACNNNNNNGTC	1 cut(s)	49
Ecl136II	GAGCTC	2 cut(s)	197, 415
Eco24I	GRGCYC	3 cut(s)	199, 417, 674
Eco31I	GGTCTC	1 cut(s)	262
Eco53kI	GAGCTC	2 cut(s)	197, 415
Eco88I	CYCGRG	1 cut(s)	515
EcoICRI	GAGCTC	2 cut(s)	197, 415
EcoNI	CCTNNNNNAGG	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	905
EcoRII	CCWGG	3 cut(s)	556, 798, 865
EcoT38I	GRGCYC	3 cut(s)	199, 417, 674
FaeI	CATG	4 cut(s)	183, 494, 856, 958
FaqI	GGGAC	2 cut(s)	525, 609
FatI	CATG	4 cut(s)	179, 490, 852, 954
FbaI	TGATCA	3 cut(s)	307, 328, 613
Fnu4HI	GCNGC	5 cut(s)	242, 245, 487, 965, 1024
FokI	GGATG	5 cut(s)	113, 359, 827, 838, 932
FriOI	GRGCYC	3 cut(s)	199, 417, 674
Fsp4HI	GCNGC	5 cut(s)	242, 245, 487, 965, 1024
FspBI	CTAG	2 cut(s)	719, 959
GluI	GCNGC	5 cut(s)	242, 245, 487, 965, 1024
GsaI	CCCAGC	1 cut(s)	137
HapII	CCGG	2 cut(s)	375, 603
Hin1II	CATG	4 cut(s)	183, 494, 856, 958
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	5 cut(s)	84, 217, 513, 527, 656
HpaI	GTTAAC	1 cut(s)	889
HpaII	CCGG	2 cut(s)	375, 603
Hpy166II	GTNNAC	2 cut(s)	78, 889
Hpy188I	TCNGA	3 cut(s)	232, 333, 1015
Hpy188III	TCNNGA	7 cut(s)	35, 200, 401, 422, 623, 707, 740
Hpy8I	GTNNAC	2 cut(s)	78, 889
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	2 cut(s)	252, 367
HpyCH4IV	ACGT	2 cut(s)	598, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	380, 404, 649, 722, 964
HpySE526I	ACGT	2 cut(s)	598, 695
Hsp92II	CATG	4 cut(s)	183, 494, 856, 958
Ksp22I	TGATCA	3 cut(s)	307, 328, 613
KspAI	GTTAAC	1 cut(s)	889
Kzo9I	GATC	6 cut(s)	153, 307, 328, 586, 613, 879
LmnI	GCTCC	4 cut(s)	14, 194, 677, 730
Lsp1109I	GCAGC	4 cut(s)	231, 498, 951, 1010
LweI	GCATC	4 cut(s)	91, 417, 630, 748
MaeI	CTAG	2 cut(s)	719, 959
MaeII	ACGT	2 cut(s)	598, 695
MalI	GATC	6 cut(s)	155, 309, 330, 588, 615, 881
MboI	GATC	6 cut(s)	153, 307, 328, 586, 613, 879
MboII	GAAGA	2 cut(s)	581, 868
MhlI	GDGCHC	4 cut(s)	199, 417, 609, 674
MluCI	AATT	4 cut(s)	30, 441, 561, 905
MlyI	GAGTC	3 cut(s)	507, 521, 650
MmeI	TCCRAC	1 cut(s)	318
MseI	TTAA	2 cut(s)	680, 888
MspI	CCGG	2 cut(s)	375, 603
MspR9I	CCNGG	4 cut(s)	558, 604, 800, 867
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	3 cut(s)	558, 800, 867
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	5 cut(s)	380, 404, 649, 722, 964
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	6 cut(s)	153, 307, 328, 586, 613, 879
NlaIII	CATG	4 cut(s)	183, 494, 856, 958
NlaIV	GGNNCC	2 cut(s)	608, 673
NruI	TCGCGA	1 cut(s)	402
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	515
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	84, 217
PkrI	GCNGC	5 cut(s)	243, 246, 488, 966, 1025
PleI	GAGTC	3 cut(s)	507, 521, 650
PpsI	GAGTC	3 cut(s)	507, 521, 650
Psp124BI	GAGCTC	2 cut(s)	199, 417
Psp6I	CCWGG	3 cut(s)	556, 798, 865
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	3 cut(s)	556, 798, 865
PspN4I	GGNNCC	2 cut(s)	608, 673
PspXI	VCTCGAGB	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	488
RruI	TCGCGA	1 cut(s)	402
RsaI	GTAC	4 cut(s)	77, 227, 364, 774
RsaNI	GTAC	4 cut(s)	76, 226, 363, 773
SacI	GAGCTC	2 cut(s)	199, 417
SaqAI	TTAA	2 cut(s)	680, 888
SatI	GCNGC	5 cut(s)	242, 245, 487, 965, 1024
Sau3AI	GATC	6 cut(s)	153, 307, 328, 586, 613, 879
SchI	GAGTC	3 cut(s)	507, 521, 650
ScrFI	CCNGG	4 cut(s)	558, 604, 800, 867
SduI	GDGCHC	4 cut(s)	199, 417, 609, 674
SfaNI	GCATC	4 cut(s)	91, 417, 630, 748
SfcI	CTRYAG	2 cut(s)	248, 484
Sfr274I	CTCGAG	1 cut(s)	515
SlaI	CTCGAG	1 cut(s)	515
SmlI	CTYRAG	3 cut(s)	200, 515, 707
SmoI	CTYRAG	3 cut(s)	200, 515, 707
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	4 cut(s)	30, 441, 561, 905
SsiI	CCGC	2 cut(s)	241, 297
SspMI	CTAG	2 cut(s)	719, 959
SstI	GAGCTC	2 cut(s)	199, 417
StyD4I	CCNGG	4 cut(s)	556, 602, 798, 865
TaaI	ACNGT	2 cut(s)	252, 367
TaiI	ACGT	2 cut(s)	601, 698
TaqI	TCGA	6 cut(s)	82, 118, 516, 624, 821, 882
TaqII	GACCGA	1 cut(s)	244
TasI	AATT	4 cut(s)	30, 441, 561, 905
TatI	WGTACW	1 cut(s)	772
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	84, 217
Tru1I	TTAA	2 cut(s)	680, 888
Tru9I	TTAA	2 cut(s)	680, 888
TscAI	CASTG	2 cut(s)	24, 163
TseI	GCWGC	4 cut(s)	244, 486, 964, 1023
TspDTI	ATGAA	2 cut(s)	662, 869
TspRI	CASTG	2 cut(s)	24, 163
XagI	CCTNNNNNAGG	1 cut(s)	614
XapI	RAATTY	2 cut(s)	30, 905
XceI	RCATGY	1 cut(s)	183
XhoI	CTCGAG	1 cut(s)	515
XspI	CTAG	2 cut(s)	719, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.