Prupe.1G454600_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
38195530 .. 38197498
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G454600.1

Sequence Viewer

Length: 1635 bp
ATGGCAACGAGAATCAGCGCCGTAAGTGTCAGAGAATTGGAAGATTTCTTCGTACCCACGTTGCTAAATTGTAAAAACACTTCCGGGTTGAAGAAAATTCACGCTCAAATTGTGAAGTTCTCGTTATCACAAAGCAATTTCTTGGTCACAAAAATGGTGGATGTTTGTGACAACAGTGGGAATTTAGGCTACGCCAGTTTGCTATTCAAACAAGTTCTTGAGCCAAACGTGTTTTTGTTCAATGCGATGATCAGAGCTTACACGCATCATCAAATGTATGATTTAGCAGTCACTTTGTATAAGCAAATGCCGAGATACTCACAAGCTGAGAACCCCATTTTTCCTGACAAATTCACGTTCCCGTTTATAATAAAATCTTGTGCAGGGCTATTTTGTGAAGGTTTGGGGACGCAAATTCATGCCCAAGTACGTAAATTTGGCCCAAAGTCCCATTTGCTGATAGAAAATGCACTGCTAGATTTATATACCAAGTGTGAGAACTTAACAGATGCACACAAAGTGTTTGATGGTATGACTGAAATGGATGTGGTTTCTTGGAATAGTCTCCTTTCTGGGTATGCTAGATTGGGGCAGATGAGAAAGGCCAGAGGAGTGTTTGAGGAAATCCCTAACAAGACTATTGTGTCTTGGACAACAATGATTTCAGGGTACACCAGAATCGGGTGCTACGCTGACGCTTTGGACATTTTTCGGCAAATGCAAGTGTTGGGTATTGAAGCTGATGAGATCAGTATTGTTTCTGTTCTGCCGGCATGCGCGCAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCACATGTACTCAGATAAGAAAAGGCTATTGCAGTCTACTTGTGTTTGCAACGCCCTGATTGAAATGTATGTGAAATGTGGTTGCGTTGATCAAGCTTGGCAGTTGTTTGATAAGATGTTGGAGAGGGATGTGATTTCTTGGAGTACCATGATTGCAGGGCTGGCGAATCACGGTAAAGCTCGCGAAGCAATCAAACTCTTTCAAGGCATGCAGCGAGCAAAGGTTAAACCTAATGGCATTACATTTCTTGGTCTTTTATCAGCCTGCACCCATGCTGGCTTATGGAATGAGGGAGTTAAGTACTTTGATTCTATGAGAGAAAACTATAACATAGAGCCGGAAATTGAGCATTATGGTTGTTTAGTTGATCTTCTTGGACGTGCTGGGCACCTTGACCAGGCTTTTGACAGAGTAAAGAAGATGCCCATGAAGCCAGAGTCAAAGATTTGGGGTTCTCTCTTAAGCTCTTGCAGGACTCATTGCAATCTTGAGATTGCCATTACTGCCATGGAGCACCTTTCAGTGCTTGAACCAGATGATGCAGGGAACTATGTTTTACTTTCCAACATATATGCAGACCTGGGGAAGTGGGAAGATGTGTCAAGGATGAGGAAACTCATAAGAAGTAAGAGCATGAAGAGAACCCCAGGTTGCAGTTTGATTGAGGTTAACAATGTGGTTATGGAGTTTGTATCAGGCAACGATTCGAAACCATTTGCAAAAGACATATTTTCCATGCTAGAGCTTCTCGTTTTACAACACAACATACCAGATGATAAGATAGAAGCCATTCCTGAGGATTGCAGTCATTTTGTGTGTTAA

Protein Analysis

545

Amino Acids

61.33

Weight (kDa)

6.73

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014514)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AasI GACNNNNNNGTC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 1200
AccI GTMKAC 1 cut(s) 848
AccII CGCG 2 cut(s) 779, 996
AcsI RAATTY 5 cut(s) 96, 181, 350, 414, 434
AdeI CACNNNGTG 1 cut(s) 520
AfaI GTAC 6 cut(s) 54, 429, 671, 821, 958, 1115
AfiI CCNNNNNNNGG 2 cut(s) 681, 1210
AflII CTTAAG 1 cut(s) 1273
AflIII ACRYGT 2 cut(s) 228, 816
AgsI TTSAA 7 cut(s) 91, 208, 241, 737, 875, 1016, 1343
AjiI CACGTC 1 cut(s) 1193
AjnI CCWGG 3 cut(s) 1209, 1392, 1459
AluBI AGCT 9 cut(s) 257, 326, 740, 784, 791, 908, 992, 1278, 1558
AluI AGCT 9 cut(s) 257, 326, 740, 784, 791, 908, 992, 1278, 1558
Alw21I GWGCWC 2 cut(s) 793, 1329
Alw26I GTCTC 1 cut(s) 569
AoxI GGCC 2 cut(s) 439, 603
ApeKI GCWGC 2 cut(s) 781, 1024
ApoI RAATTY 5 cut(s) 96, 181, 350, 414, 434
ArsI GACNNNNNNTTYG 2 cut(s) 1199, 1231
Asp700I GAANNNNTTC 1 cut(s) 1602
AspLEI GCGC 3 cut(s) 20, 779, 781
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 1520
AxyI CCTNAGG 1 cut(s) 1608
BaeGI GKGCMC 1 cut(s) 1203
BanI GGYRCC 1 cut(s) 1200
BanII GRGCYC 1 cut(s) 793
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
Bbv12I GWGCWC 2 cut(s) 793, 1329
BbvI GCAGC 2 cut(s) 793, 1036
BccI CCATC 1 cut(s) 521
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 3 cut(s) 1211, 1394, 1461
BclI TGATCA 2 cut(s) 249, 901
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 3 cut(s) 476, 582, 1553
BfoI RGCGCY 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 1273
BisI GCNGC 2 cut(s) 782, 1025
BlsI GCNGC 2 cut(s) 783, 1026
BmcAI AGTACT 1 cut(s) 1115
Bme1390I CCNGG 4 cut(s) 85, 1211, 1394, 1461
BmgBI CACGTC 1 cut(s) 1193
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 1202
BmrFI CCNGG 4 cut(s) 85, 1211, 1394, 1461
BmsI GCATC 4 cut(s) 274, 499, 1224, 1342
Bpu14I TTCGAA 1 cut(s) 1520
BpuEI CTTGAG 3 cut(s) 239, 815, 1322
BpuMI CCSGG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 1320, 1393, 1459
Bsc4I CCNNNNNNNGG 2 cut(s) 681, 1210
Bse118I RCCGGY 1 cut(s) 769
Bse1I ACTGG 1 cut(s) 195
Bse21I CCTNAGG 1 cut(s) 1608
Bse3DI GCAATG 1 cut(s) 1291
BseBI CCWGG 3 cut(s) 1211, 1394, 1461
BseDI CCNNGG 3 cut(s) 1320, 1393, 1459
BseGI GGATG 4 cut(s) 166, 550, 946, 1425
BseLI CCNNNNNNNGG 2 cut(s) 681, 1210
BseMI GCAATG 1 cut(s) 1291
BseMII CTCAG 3 cut(s) 318, 837, 1599
BseNI ACTGG 1 cut(s) 195
BsePI GCGCGC 1 cut(s) 777
BseRI GAGGAG 1 cut(s) 624
BseSI GKGCMC 1 cut(s) 1203
BseXI GCAGC 2 cut(s) 793, 1036
BseYI CCCAGC 1 cut(s) 1196
BsgI GTGCAG 2 cut(s) 402, 1063
Bsh1236I CGCG 2 cut(s) 779, 996
BshFI GGCC 2 cut(s) 441, 605
BshNI GGYRCC 1 cut(s) 1200
BsiHKAI GWGCWC 2 cut(s) 793, 1329
BsiSI CCGG 3 cut(s) 84, 770, 1151
BslFI GGGAC 2 cut(s) 421, 433
BslI CCNNNNNNNGG 2 cut(s) 681, 1210
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 2 cut(s) 421, 433
BsnI GGCC 2 cut(s) 441, 605
Bsp119I TTCGAA 1 cut(s) 1520
Bsp1286I GDGCHC 3 cut(s) 793, 1203, 1329
Bsp143I GATC 4 cut(s) 249, 747, 901, 1180
Bsp19I CCATGG 1 cut(s) 1320
Bsp68I TCGCGA 1 cut(s) 996
BspANI GGCC 2 cut(s) 441, 605
BspCNI CTCAG 3 cut(s) 319, 836, 1600
BspFNI CGCG 2 cut(s) 779, 996
BspLI GGNNCC 1 cut(s) 1202
BspT104I TTCGAA 1 cut(s) 1520
BspT107I GGYRCC 1 cut(s) 1200
BspTI CTTAAG 1 cut(s) 1273
BsrDI GCAATG 1 cut(s) 1291
BsrFI RCCGGY 1 cut(s) 769
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 769
BssECI CCNNGG 3 cut(s) 1320, 1393, 1459
BssHII GCGCGC 1 cut(s) 777
BssMI GATC 4 cut(s) 249, 747, 901, 1180
BssT1I CCWWGG 1 cut(s) 1320
Bst2UI CCWGG 3 cut(s) 1211, 1394, 1461
Bst4CI ACNGT 2 cut(s) 176, 986
Bst6I CTCTTC 1 cut(s) 1445
BstAFI CTTAAG 1 cut(s) 1273
BstBAI YACGTR 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 1520
BstC8I GCNNGC 9 cut(s) 771, 775, 779, 975, 994, 1022, 1029, 1078, 1090
BstDEI CTNAG 3 cut(s) 327, 823, 1608
BstDSI CCRYGG 1 cut(s) 1320
BstENI CCTNNNNNAGG 1 cut(s) 1208
BstF5I GGATG 4 cut(s) 166, 550, 946, 1425
BstFNI CGCG 2 cut(s) 779, 996
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 3 cut(s) 20, 779, 781
BstKTI GATC 4 cut(s) 252, 750, 904, 1183
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 4 cut(s) 249, 747, 901, 1180
BstMWI GCNNNNNNNGC 4 cut(s) 974, 998, 1243, 1316
BstNI CCWGG 3 cut(s) 1211, 1394, 1461
BstNSI RCATGY 3 cut(s) 777, 820, 1024
BstSCI CCNGG 4 cut(s) 83, 1209, 1392, 1459
BstSLI GKGCMC 1 cut(s) 1203
BstSNI TACGTA 1 cut(s) 431
BstUI CGCG 2 cut(s) 779, 996
BstV1I GCAGC 2 cut(s) 793, 1036
Bsu36I CCTNAGG 1 cut(s) 1608
BsuRI GGCC 2 cut(s) 441, 605
BtgI CCRYGG 1 cut(s) 1320
BtgZI GCGATG 1 cut(s) 260
BtrI CACGTC 1 cut(s) 1193
BtsCI GGATG 4 cut(s) 166, 550, 946, 1425
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 3 cut(s) 181, 470, 1341
BtuMI TCGCGA 1 cut(s) 996
Cac8I GCNNGC 9 cut(s) 771, 775, 779, 975, 994, 1022, 1029, 1078, 1090
CfoI GCGC 3 cut(s) 20, 779, 781
Cfr10I RCCGGY 1 cut(s) 769
Cfr13I GGNCC 1 cut(s) 440
CseI GACGC 2 cut(s) 418, 704
Csp6I GTAC 6 cut(s) 53, 428, 670, 820, 957, 1114
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviQI GTAC 6 cut(s) 53, 428, 670, 820, 957, 1114
DdeI CTNAG 3 cut(s) 327, 823, 1608
DpnI GATC 4 cut(s) 251, 749, 903, 1182
DpnII GATC 4 cut(s) 249, 747, 901, 1180
DraIII CACNNNGTG 1 cut(s) 520
DrdI GACNNNNNNGTC 1 cut(s) 643
DseDI GACNNNNNNGTC 1 cut(s) 643
Eam1104I CTCTTC 1 cut(s) 1445
EarI CTCTTC 1 cut(s) 1445
Ecl136II GAGCTC 1 cut(s) 791
Eco105I TACGTA 1 cut(s) 431
Eco130I CCWWGG 1 cut(s) 1320
Eco24I GRGCYC 1 cut(s) 793
Eco53kI GAGCTC 1 cut(s) 791
Eco81I CCTNAGG 1 cut(s) 1608
EcoICRI GAGCTC 1 cut(s) 791
EcoNI CCTNNNNNAGG 1 cut(s) 1208
EcoRII CCWGG 3 cut(s) 1209, 1392, 1459
EcoT14I CCWWGG 1 cut(s) 1320
EcoT38I GRGCYC 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 1320
FaqI GGGAC 2 cut(s) 421, 433
FbaI TGATCA 2 cut(s) 249, 901
FblI GTMKAC 1 cut(s) 848
Fnu4HI GCNGC 2 cut(s) 782, 1025
FokI GGATG 4 cut(s) 173, 557, 953, 1432
FriOI GRGCYC 1 cut(s) 793
Fsp4HI GCNGC 2 cut(s) 782, 1025
FspBI CTAG 3 cut(s) 476, 582, 1553
GlaI GCGC 3 cut(s) 19, 778, 780
GluI GCNGC 2 cut(s) 782, 1025
GsaI CCCAGC 1 cut(s) 1200
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 2 cut(s) 441, 605
HapII CCGG 3 cut(s) 84, 770, 1151
HgaI GACGC 2 cut(s) 418, 704
HhaI GCGC 3 cut(s) 20, 779, 781
Hin6I GCGC 3 cut(s) 18, 777, 779
HinP1I GCGC 3 cut(s) 18, 777, 779
HincII GTYRAC 1 cut(s) 1483
HindII GTYRAC 1 cut(s) 1483
HindIII AAGCTT 1 cut(s) 906
HinfI GANTC 8 cut(s) 12, 678, 811, 979, 1121, 1250, 1288, 1517
HpaI GTTAAC 1 cut(s) 1483
HpaII CCGG 3 cut(s) 84, 770, 1151
Hpy166II GTNNAC 3 cut(s) 672, 849, 1483
Hpy188I TCNGA 3 cut(s) 32, 254, 826
Hpy188III TCNNGA 6 cut(s) 218, 344, 794, 995, 1301, 1607
Hpy8I GTNNAC 3 cut(s) 672, 849, 1483
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 176, 986
HpyCH4IV ACGT 5 cut(s) 59, 228, 356, 430, 1192
HpyF10VI GCNNNNNNNGC 4 cut(s) 974, 998, 1243, 1316
HpyF3I CTNAG 3 cut(s) 327, 823, 1608
HpySE526I ACGT 5 cut(s) 59, 228, 356, 430, 1192
HspAI GCGC 3 cut(s) 18, 777, 779
KroI GCCGGC 1 cut(s) 769
KroNI GCCGGC 1 cut(s) 771
Ksp22I TGATCA 2 cut(s) 249, 901
KspAI GTTAAC 1 cut(s) 1483
Kzo9I GATC 4 cut(s) 249, 747, 901, 1180
LmnI GCTCC 2 cut(s) 788, 1324
Lsp1109I GCAGC 2 cut(s) 793, 1036
LweI GCATC 4 cut(s) 274, 499, 1224, 1342
MaeI CTAG 3 cut(s) 476, 582, 1553
MaeII ACGT 5 cut(s) 59, 228, 356, 430, 1192
MaeIII GTNAC 3 cut(s) 145, 167, 289
MalI GATC 4 cut(s) 251, 749, 903, 1182
MboI GATC 4 cut(s) 249, 747, 901, 1180
MboII GAAGA 7 cut(s) 40, 53, 103, 1175, 1243, 1418, 1462
MhlI GDGCHC 3 cut(s) 793, 1203, 1329
MlyI GAGTC 2 cut(s) 1259, 1282
MmeI TCCRAC 2 cut(s) 912, 1401
MnlI CCTC 8 cut(s) 602, 613, 790, 930, 1096, 1416, 1471, 1603
MroNI GCCGGC 1 cut(s) 769
MroXI GAANNNNTTC 1 cut(s) 1602
MseI TTAA 6 cut(s) 503, 1038, 1110, 1274, 1482, 1633
MslI CAYNNNNRTG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 1273
MspI CCGG 3 cut(s) 84, 770, 1151
MspR9I CCNGG 4 cut(s) 85, 1211, 1394, 1461
MvaI CCWGG 3 cut(s) 1211, 1394, 1461
MvnI CGCG 2 cut(s) 779, 996
MwoI GCNNNNNNNGC 4 cut(s) 974, 998, 1243, 1316
NaeI GCCGGC 1 cut(s) 771
NciI CCSGG 1 cut(s) 85
NcoI CCATGG 1 cut(s) 1320
NdeII GATC 4 cut(s) 249, 747, 901, 1180
NgoMIV GCCGGC 1 cut(s) 769
NlaIV GGNNCC 1 cut(s) 1202
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 3 cut(s) 145, 167, 289
NruI TCGCGA 1 cut(s) 996
NspI RCATGY 3 cut(s) 777, 820, 1024
NspV TTCGAA 1 cut(s) 1520
PaeI GCATGC 2 cut(s) 777, 1024
PauI GCGCGC 1 cut(s) 777
PciI ACATGT 1 cut(s) 816
PdiI GCCGGC 1 cut(s) 771
PdmI GAANNNNTTC 1 cut(s) 1602
PfeI GAWTC 6 cut(s) 12, 678, 811, 979, 1121, 1517
PkrI GCNGC 2 cut(s) 783, 1026
PleI GAGTC 2 cut(s) 1258, 1282
PpsI GAGTC 2 cut(s) 1258, 1282
Ppu21I YACGTR 1 cut(s) 431
PscI ACATGT 1 cut(s) 816
PsiI TTATAA 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 793
Psp6I CCWGG 3 cut(s) 1209, 1392, 1459
PspFI CCCAGC 1 cut(s) 1196
PspGI CCWGG 3 cut(s) 1209, 1392, 1459
PspN4I GGNNCC 1 cut(s) 1202
PspPI GGNCC 1 cut(s) 440
PteI GCGCGC 1 cut(s) 777
RruI TCGCGA 1 cut(s) 996
RsaI GTAC 6 cut(s) 54, 429, 671, 821, 958, 1115
RsaNI GTAC 6 cut(s) 53, 428, 670, 820, 957, 1114
RseI CAYNNNNRTG 1 cut(s) 152
SacI GAGCTC 1 cut(s) 793
SaqAI TTAA 6 cut(s) 503, 1038, 1110, 1274, 1482, 1633
SatI GCNGC 2 cut(s) 782, 1025
Sau3AI GATC 4 cut(s) 249, 747, 901, 1180
Sau96I GGNCC 1 cut(s) 440
ScaI AGTACT 1 cut(s) 1115
SchI GAGTC 2 cut(s) 1259, 1282
ScrFI CCNGG 4 cut(s) 85, 1211, 1394, 1461
SduI GDGCHC 3 cut(s) 793, 1203, 1329
SfaNI GCATC 4 cut(s) 274, 499, 1224, 1342
SfuI TTCGAA 1 cut(s) 1520
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 4 cut(s) 218, 794, 1273, 1301
SmoI CTYRAG 4 cut(s) 218, 794, 1273, 1301
SnaBI TACGTA 1 cut(s) 431
SphI GCATGC 2 cut(s) 777, 1024
SspMI CTAG 3 cut(s) 476, 582, 1553
SstI GAGCTC 1 cut(s) 793
StyD4I CCNGG 4 cut(s) 83, 1209, 1392, 1459
StyI CCWWGG 1 cut(s) 1320
TaaI ACNGT 2 cut(s) 176, 986
TaiI ACGT 5 cut(s) 62, 231, 359, 433, 1195
TaqI TCGA 1 cut(s) 1520
TatI WGTACW 2 cut(s) 819, 1113
TfiI GAWTC 6 cut(s) 12, 678, 811, 979, 1121, 1517
Tru1I TTAA 6 cut(s) 503, 1038, 1110, 1274, 1482, 1633
Tru9I TTAA 6 cut(s) 503, 1038, 1110, 1274, 1482, 1633
TscAI CASTG 3 cut(s) 181, 477, 1341
TseFI GTSAC 3 cut(s) 145, 167, 289
TseI GCWGC 2 cut(s) 781, 1024
Tsp45I GTSAC 3 cut(s) 145, 167, 289
TspDTI ATGAA 3 cut(s) 407, 1256, 1463
TspRI CASTG 3 cut(s) 181, 477, 1341
Vha464I CTTAAG 1 cut(s) 1273
XagI CCTNNNNNAGG 1 cut(s) 1208
XapI RAATTY 5 cut(s) 96, 181, 350, 414, 434
XceI RCATGY 3 cut(s) 777, 820, 1024
XcmI CCANNNNNNNNNTGG 1 cut(s) 1318
XmiI GTMKAC 1 cut(s) 848
XmnI GAANNNNTTC 1 cut(s) 1602
XspI CTAG 3 cut(s) 476, 582, 1553
ZrmI AGTACT 1 cut(s) 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.