Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8430547.1

Orthogroup ID

OG0014514

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1451

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8430547.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1450 bp

atggtggatgtgtgcgactacagtgggaatgtagactatgctagcttgctattcaaacaagttgtggagccaaatgtgtttctgttcaatgcgatgatccgagcttatacgcataatcatatctatggtttggcgataactttgtataagcagatgctgagacacccagaatctggaaaccctatttttccagacaaattcacattcccgtttgttataaaatgttgtgcagggctatattgtgaagattttgggaggcaagttcatggtcaagtatgtaaaattgggccagagtcgcatttgctgattcagaatgcactggtggatttttataccaagtgtgatcatttgagggatgcacataaggtgtttgaggaaatgactgagagagatgtgattacttggaatagtcttcttacagggtatgttaggttggggcagatgagaaaggcaggagcagtgtttgaggaaattcctgacaagactattgtctcttggacagcaatggtttcagggtacactcgaatcgggtgttatggggatgctttggagatttttcgacgaatgcaaatgctgggtattgagcctgatgagatcagtgttgttgctgttttgccagcatgctcacagcttggagctcttgatgttgggaaatggattcacaggtactcggataaaaagcggctgctacagtcggtctctgtgtgcaatgccctgattgaaatgtatgtcaaatgcggttgcattgatcaagcttggcagttgtttgatcagatgttggaaagggatgtgatttcttggagtaccgtgattgccggactggcgaataatggtaaagctcgcgaggcagttgagctctttcaagagatgcagagagcgaagattgaacccaatgggattacatttcttggtcttttatcagcctgcagccatgctggtttatggaaggagggactcgagtattttgactctatgagagatgagtataaaatagagccaggaattgagcattatggttgtttagttgatcttctgggacgtgccgggcaccttgatcaggctctcgacaaaataaagcagatgccaatgaagccagactcaaagatttggggctccttgttaagctcttgcaggacgtattgcaatcttgagattgctctagttgcaatggagcaacttcaagagcttgaaccagatgatgcaggaaactgtgtactactttccaatatatatgcagacctggggaggtgggaggatgtgtcgaggatgaggaaactcataagaagcaaaagcatgaagaaaaccccaggttgcagtttgatcgaggttaacaatgcagttttagaattcgtatcaggggatgatacaaaaccatttgcaaaggacatattttccatgctagagctgctggtttcacaccaaagcataccagatgataacattgaagctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

483

Amino Acids

54.57

Weight (kDa)

5.34

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20540 AT2G20540
fragaria_vesca	FvH4_2g36320
malus_domestica	MD15G1099800.v1.1
prunus_persica	Prupe.1G454600_v2.0.a1
pyrus_communis	pycom15g09180
rosa_chinensis	RchiOBHm_Chr6g0305561
rosa_laevigata	RLG00000010877
rosa_multiflora	Rmu_co8430547.1_g000001 Rmu_sc0000841.1_g000002 Rmu_sc0001153.1_g000005
rosa_roxburghii	Rroxscaffold_7G00162590
rosa_rugosa	Rorug06G0341700
rosa_samantha	Rh6AG453700 Rh6BG447900 Rh6DG454000
rosa_wichuraiana	Rw6G039540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	1047
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	843
AciI	CCGC	2 cut(s)	682, 738
AclWI	GGATC	1 cut(s)	91
AcsI	RAATTY	3 cut(s)	197, 471, 1346
AfaI	GTAC	4 cut(s)	518, 668, 805, 1215
AfiI	CCNNNNNNNGG	2 cut(s)	173, 1057
AgsI	TTSAA	8 cut(s)	55, 88, 722, 863, 887, 1181, 1190, 1445
AjiI	CACGTC	1 cut(s)	1040
AjnI	CCWGG	3 cut(s)	997, 1239, 1306
Alw21I	GWGCWC	2 cut(s)	640, 858
Alw26I	GTCTC	3 cut(s)	154, 496, 703
AlwI	GGATC	1 cut(s)	91
AlwNI	CAGNNNCTG	2 cut(s)	157, 173
Ama87I	CYCGRG	1 cut(s)	956
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	685, 927, 1405
ApoI	RAATTY	3 cut(s)	197, 471, 1346
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	1045
AsuNHI	GCTAGC	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	956
BaeGI	GKGCMC	1 cut(s)	1050
BanI	GGYRCC	1 cut(s)	1047
BanII	GRGCYC	3 cut(s)	640, 858, 1115
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	2 cut(s)	640, 858
BbvI	GCAGC	3 cut(s)	672, 939, 1392
BcgI	CGANNNNNNTGC	2 cut(s)	1303, 1337
BciT130I	CCWGG	3 cut(s)	999, 1241, 1308
BclI	TGATCA	4 cut(s)	343, 748, 769, 1054
BcnI	CCSGG	1 cut(s)	1045
BcoDI	GTCTC	3 cut(s)	154, 496, 703
BfaI	CTAG	3 cut(s)	42, 1160, 1400
BfmI	CTRYAG	3 cut(s)	19, 689, 925
BglI	GCCNNNNNGGC	1 cut(s)	821
BisI	GCNGC	4 cut(s)	683, 686, 928, 1406
BlsI	GCNGC	4 cut(s)	684, 687, 929, 1407
Bme1390I	CCNGG	4 cut(s)	999, 1045, 1241, 1308
BmeT110I	CYCGRG	1 cut(s)	956
BmgBI	CACGTC	1 cut(s)	1040
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	69, 1049, 1114
BmrFI	CCNGG	4 cut(s)	999, 1045, 1241, 1308
BmsI	GCATC	6 cut(s)	144, 346, 532, 858, 1071, 1189
BmtI	GCTAGC	1 cut(s)	45
BoxI	GACNNNNGTC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	1169
BpuMI	CCSGG	1 cut(s)	1045
BsaI	GGTCTC	1 cut(s)	703
BsaJI	CCNNGG	2 cut(s)	1240, 1306
BsaXI	ACNNNNNCTCC	2 cut(s)	1244, 1274
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 1057
Bse1I	ACTGG	2 cut(s)	324, 825
Bse3DI	GCAATG	3 cut(s)	510, 715, 1173
BseBI	CCWGG	3 cut(s)	999, 1241, 1308
BseDI	CCNNGG	2 cut(s)	1240, 1306
BseGI	GGATG	7 cut(s)	13, 361, 547, 793, 1261, 1272, 1366
BseLI	CCNNNNNNNGG	2 cut(s)	173, 1057
BseMI	GCAATG	3 cut(s)	510, 715, 1173
BseMII	CTCAG	2 cut(s)	149, 375
BseNI	ACTGG	2 cut(s)	324, 825
BseSI	GKGCMC	1 cut(s)	1050
BseXI	GCAGC	3 cut(s)	672, 939, 1392
BseYI	CCCAGC	1 cut(s)	574
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	843
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	1047
BsiHKAI	GWGCWC	2 cut(s)	640, 858
BsiHKCI	CYCGRG	1 cut(s)	956
BsiSI	CCGG	2 cut(s)	816, 1044
BslFI	GGGAC	2 cut(s)	966, 1050
BslI	CCNNNNNNNGG	2 cut(s)	173, 1057
BsmAI	GTCTC	3 cut(s)	154, 496, 703
BsmFI	GGGAC	2 cut(s)	966, 1050
BsmI	GAATGC	2 cut(s)	319, 570
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	703
BsoBI	CYCGRG	1 cut(s)	956
Bsp1286I	GDGCHC	4 cut(s)	640, 858, 1050, 1115
Bsp143I	GATC	8 cut(s)	96, 343, 594, 748, 769, 1027, 1054, 1320
Bsp68I	TCGCGA	1 cut(s)	843
BspACI	CCGC	2 cut(s)	682, 738
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	150, 376
BspFNI	CGCG	1 cut(s)	843
BspLI	GGNNCC	3 cut(s)	69, 1049, 1114
BspMAI	CTGCAG	1 cut(s)	929
BspOI	GCTAGC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	1047
BspTNI	GGTCTC	1 cut(s)	703
BsrDI	GCAATG	3 cut(s)	510, 715, 1173
BsrI	ACTGG	2 cut(s)	324, 825
BssECI	CCNNGG	2 cut(s)	1240, 1306
BssMI	GATC	8 cut(s)	96, 343, 594, 748, 769, 1027, 1054, 1320
Bst2UI	CCWGG	3 cut(s)	999, 1241, 1308
Bst4CI	ACNGT	4 cut(s)	23, 693, 808, 1211
BstC8I	GCNNGC	6 cut(s)	43, 47, 618, 622, 841, 925
BstDEI	CTNAG	2 cut(s)	158, 384
BstENI	CCTNNNNNAGG	1 cut(s)	1055
BstF5I	GGATG	7 cut(s)	13, 361, 547, 793, 1261, 1272, 1366
BstFNI	CGCG	1 cut(s)	843
BstKTI	GATC	8 cut(s)	99, 346, 597, 751, 772, 1030, 1057, 1323
BstMAI	GTCTC	3 cut(s)	154, 496, 703
BstMBI	GATC	8 cut(s)	96, 343, 594, 748, 769, 1027, 1054, 1320
BstMWI	GCNNNNNNNGC	6 cut(s)	295, 821, 845, 1090, 1163, 1405
BstNI	CCWGG	3 cut(s)	999, 1241, 1308
BstNSI	RCATGY	1 cut(s)	624
BstPAI	GACNNNNGTC	1 cut(s)	488
BstSCI	CCNGG	4 cut(s)	997, 1043, 1239, 1306
BstSFI	CTRYAG	3 cut(s)	19, 689, 925
BstSLI	GKGCMC	1 cut(s)	1050
BstUI	CGCG	1 cut(s)	843
BstV1I	GCAGC	3 cut(s)	672, 939, 1392
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	107
BtrI	CACGTC	1 cut(s)	1040
BtsCI	GGATG	7 cut(s)	13, 361, 547, 793, 1261, 1272, 1366
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	4 cut(s)	28, 317, 465, 604
BtuMI	TCGCGA	1 cut(s)	843
Cac8I	GCNNGC	6 cut(s)	43, 47, 618, 622, 841, 925
CaiI	CAGNNNCTG	2 cut(s)	157, 173
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	4 cut(s)	517, 667, 804, 1214
CviAII	CATG	5 cut(s)	266, 621, 932, 1294, 1396
CviQI	GTAC	4 cut(s)	517, 667, 804, 1214
DdeI	CTNAG	2 cut(s)	158, 384
DpnI	GATC	8 cut(s)	98, 345, 596, 750, 771, 1029, 1056, 1322
DpnII	GATC	8 cut(s)	96, 343, 594, 748, 769, 1027, 1054, 1320
Ecl136II	GAGCTC	2 cut(s)	638, 856
Eco24I	GRGCYC	3 cut(s)	640, 858, 1115
Eco31I	GGTCTC	1 cut(s)	703
Eco53kI	GAGCTC	2 cut(s)	638, 856
Eco88I	CYCGRG	1 cut(s)	956
EcoICRI	GAGCTC	2 cut(s)	638, 856
EcoNI	CCTNNNNNAGG	1 cut(s)	1055
EcoRI	GAATTC	1 cut(s)	1346
EcoRII	CCWGG	3 cut(s)	997, 1239, 1306
EcoT38I	GRGCYC	3 cut(s)	640, 858, 1115
FaeI	CATG	5 cut(s)	269, 624, 935, 1297, 1399
FaqI	GGGAC	2 cut(s)	966, 1050
FatI	CATG	5 cut(s)	265, 620, 931, 1293, 1395
FbaI	TGATCA	4 cut(s)	343, 748, 769, 1054
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	683, 686, 928, 1406
FokI	GGATG	7 cut(s)	20, 368, 554, 800, 1268, 1279, 1373
FriOI	GRGCYC	3 cut(s)	640, 858, 1115
Fsp4HI	GCNGC	4 cut(s)	683, 686, 928, 1406
FspBI	CTAG	3 cut(s)	42, 1160, 1400
GluI	GCNGC	4 cut(s)	683, 686, 928, 1406
GsaI	CCCAGC	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	816, 1044
Hin1II	CATG	5 cut(s)	269, 624, 935, 1297, 1399
HincII	GTYRAC	1 cut(s)	1330
HindII	GTYRAC	1 cut(s)	1330
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	8 cut(s)	170, 293, 307, 525, 658, 954, 968, 1097
HpaI	GTTAAC	1 cut(s)	1330
HpaII	CCGG	2 cut(s)	816, 1044
Hpy166II	GTNNAC	4 cut(s)	34, 519, 1214, 1330
Hpy188I	TCNGA	4 cut(s)	101, 312, 673, 774
Hpy188III	TCNNGA	9 cut(s)	174, 191, 476, 641, 842, 863, 1064, 1148, 1181
Hpy8I	GTNNAC	4 cut(s)	34, 519, 1214, 1330
Hpy99I	CGWCG	1 cut(s)	564
HpyAV	CCTTC	1 cut(s)	940
HpyCH4III	ACNGT	4 cut(s)	23, 693, 808, 1211
HpyCH4IV	ACGT	2 cut(s)	1039, 1136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	295, 821, 845, 1090, 1163, 1405
HpyF3I	CTNAG	2 cut(s)	158, 384
HpySE526I	ACGT	2 cut(s)	1039, 1136
Hsp92II	CATG	5 cut(s)	269, 624, 935, 1297, 1399
Ksp22I	TGATCA	4 cut(s)	343, 748, 769, 1054
KspAI	GTTAAC	1 cut(s)	1330
Kzo9I	GATC	8 cut(s)	96, 343, 594, 748, 769, 1027, 1054, 1320
LmnI	GCTCC	5 cut(s)	67, 455, 635, 1118, 1171
Lsp1109I	GCAGC	3 cut(s)	672, 939, 1392
LweI	GCATC	6 cut(s)	144, 346, 532, 858, 1071, 1189
MaeI	CTAG	3 cut(s)	42, 1160, 1400
MaeII	ACGT	2 cut(s)	1039, 1136
MalI	GATC	8 cut(s)	98, 345, 596, 750, 771, 1029, 1056, 1322
MboI	GATC	8 cut(s)	96, 343, 594, 748, 769, 1027, 1054, 1320
MboII	GAAGA	5 cut(s)	257, 404, 892, 1022, 1309
MhlI	GDGCHC	4 cut(s)	640, 858, 1050, 1115
MluCI	AATT	5 cut(s)	197, 282, 471, 1002, 1346
MlyI	GAGTC	4 cut(s)	302, 948, 962, 1091
MmeI	TCCRAC	1 cut(s)	759
MseI	TTAA	2 cut(s)	1121, 1329
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	2 cut(s)	816, 1044
MspR9I	CCNGG	4 cut(s)	999, 1045, 1241, 1308
Mva1269I	GAATGC	2 cut(s)	319, 570
MvaI	CCWGG	3 cut(s)	999, 1241, 1308
MvnI	CGCG	1 cut(s)	843
MwoI	GCNNNNNNNGC	6 cut(s)	295, 821, 845, 1090, 1163, 1405
NciI	CCSGG	1 cut(s)	1045
NdeII	GATC	8 cut(s)	96, 343, 594, 748, 769, 1027, 1054, 1320
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	5 cut(s)	269, 624, 935, 1297, 1399
NlaIV	GGNNCC	3 cut(s)	69, 1049, 1114
NruI	TCGCGA	1 cut(s)	843
NspI	RCATGY	1 cut(s)	624
PaeI	GCATGC	1 cut(s)	624
PaeR7I	CTCGAG	1 cut(s)	956
PctI	GAATGC	2 cut(s)	319, 570
PfeI	GAWTC	4 cut(s)	170, 307, 525, 658
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	684, 687, 929, 1407
PleI	GAGTC	4 cut(s)	301, 948, 962, 1091
PpsI	GAGTC	4 cut(s)	301, 948, 962, 1091
PshAI	GACNNNNGTC	1 cut(s)	488
PsiI	TTATAA	1 cut(s)	218
Psp124BI	GAGCTC	2 cut(s)	640, 858
Psp6I	CCWGG	3 cut(s)	997, 1239, 1306
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	3 cut(s)	997, 1239, 1306
PspN4I	GGNNCC	3 cut(s)	69, 1049, 1114
PspPI	GGNCC	1 cut(s)	287
PspXI	VCTCGAGB	1 cut(s)	956
PstI	CTGCAG	1 cut(s)	929
PstNI	CAGNNNCTG	2 cut(s)	157, 173
RruI	TCGCGA	1 cut(s)	843
RsaI	GTAC	4 cut(s)	518, 668, 805, 1215
RsaNI	GTAC	4 cut(s)	517, 667, 804, 1214
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	2 cut(s)	640, 858
SaqAI	TTAA	2 cut(s)	1121, 1329
SatI	GCNGC	4 cut(s)	683, 686, 928, 1406
Sau3AI	GATC	8 cut(s)	96, 343, 594, 748, 769, 1027, 1054, 1320
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	4 cut(s)	302, 948, 962, 1091
ScrFI	CCNGG	4 cut(s)	999, 1045, 1241, 1308
SduI	GDGCHC	4 cut(s)	640, 858, 1050, 1115
SfaNI	GCATC	6 cut(s)	144, 346, 532, 858, 1071, 1189
SfcI	CTRYAG	3 cut(s)	19, 689, 925
Sfr274I	CTCGAG	1 cut(s)	956
SlaI	CTCGAG	1 cut(s)	956
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	956, 1148
SmoI	CTYRAG	2 cut(s)	956, 1148
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	5 cut(s)	197, 282, 471, 1002, 1346
SsiI	CCGC	2 cut(s)	682, 738
SspMI	CTAG	3 cut(s)	42, 1160, 1400
SstI	GAGCTC	2 cut(s)	640, 858
StyD4I	CCNGG	4 cut(s)	997, 1043, 1239, 1306
TaaI	ACNGT	4 cut(s)	23, 693, 808, 1211
TaiI	ACGT	2 cut(s)	1042, 1139
TaqI	TCGA	6 cut(s)	523, 559, 957, 1065, 1262, 1323
TaqII	GACCGA	1 cut(s)	685
TasI	AATT	5 cut(s)	197, 282, 471, 1002, 1346
TatI	WGTACW	1 cut(s)	1213
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	4 cut(s)	170, 307, 525, 658
Tru1I	TTAA	2 cut(s)	1121, 1329
Tru9I	TTAA	2 cut(s)	1121, 1329
TscAI	CASTG	4 cut(s)	28, 324, 465, 604
TseI	GCWGC	3 cut(s)	685, 927, 1405
TspDTI	ATGAA	3 cut(s)	254, 1103, 1310
TspRI	CASTG	4 cut(s)	28, 324, 465, 604
Van91I	CCANNNNNTGG	1 cut(s)	173
XagI	CCTNNNNNAGG	1 cut(s)	1055
XapI	RAATTY	3 cut(s)	197, 471, 1346
XceI	RCATGY	1 cut(s)	624
XhoI	CTCGAG	1 cut(s)	956
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	3 cut(s)	42, 1160, 1400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.