RchiOBHm_Chr6g0305561

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014514
Physical Location & Seq
Reverse (-)
64521693 .. 64522942
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27461

Sequence Viewer

Length: 1092 bp
ATGACTGAGAGAGATGTGATTACTTGGAATAGTCTTCTTACAGGGTATGTTAGGTTGGGGCAGATGAGAAAGGCAGGAGCAGTGTTTGAGGAAATTCCTGACAAGACTATTGTGTCTTGGACAGCAATGGTTTCAGGGTACACTCGAATCGGGTGTTATGGGGATGCTTTGGAGATTTTTCGACGAATGCAAATGCTGGGTATTGAGCCTGATGAGATCAGTGTTGTTGCTGTTTTGCCAGCATGCTCACAGCTTGGAGCTCTTGAGGTTGGGAAATGGATTCACAGGTACTCGGATAAAAAGCGGCTGCTACAGTCGGTCTCTGTGTGCAATGCCCTGATTGAAATGTATGTCAAATGCGGTTGCATTGATCAAGCTTGGCAGTTGTTTGATCAGATGTTGGAGAGGGATGTGATTTCTTGGAGTACCGTGATTGCCGGACTGGCGAATAATGGTAAAGCTCGCGAAGCAGTTGAGCTCTTTCAAGAGATGCAGAGAGCGAAAATTGAACCCAATGGGATTACATTTCTTGGTCTTTTATCAGCCTGCAGCCATGCTGGTTTATGGAAGGAGGGACTCGAGTATTTTGACTCTATGAGAGATGAGTATAAAATAGAGCCAGGAATTGAGCATTATGGTTGTTTAGTTGATCTTCTGGGACGTGCCGGGCACCTTGATCAGGCTCTCGACAAAATAAAGCAGATGCCAATGAAGCCAGACTCAAAGATTTGGGGCTCCTTGTTAAGCTCTTGCAGGACGTATTGCAATCTTGAGATTGCTCTAGTTGCAATGGAGCAACTTCAAGAGCTTGAACCAGATGATGCAGGAAACTATGTACTACTTTCCAATATATATGCAGACCTGGGGAGGTGGGAGGATGTGTCGAGGATGAGGAAACTCATAAGAAGCAAAAGCATGAAGAAAACCCCAGGTTGCAGTTTGATCGAGGTTAACAATGCAGTTTTAGAATTCGTATCAGGGGATGATACAAAACCATTTGCAAAGGACATATTTTCCATGCTAGAGCTGCTGGTTTCACACCAAAGCATACCAGATGATAACATTGAAGCTGTGTCAGAGGATTGCTGCTGA

Protein Analysis

363

Amino Acids

40.79

Weight (kDa)

4.95

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 4 - 35 9.4e-06 PPR repeat family
PPR_2 PF13041 36 - 82 8.9e-07 PPR repeat family
PPR PF01535 38 - 68 5.3e-07 PPR repeat
PPR_2 PF13041 106 - 137 1e-06 PPR repeat family
PPR PF01535 109 - 137 1e-05 PPR repeat
PPR_1 PF12854 134 - 165 3.8e-06 PPR repeat
PPR_3 PF13812 135 - 183 2.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 136 - 184 4.2e-12 PPR repeat family
PPR PF01535 139 - 168 3e-07 PPR repeat
E_motif PF20431 254 - 316 4.1e-24 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20540 AT2G20540
fragaria_vesca FvH4_2g36320
malus_domestica MD15G1099800.v1.1
prunus_persica Prupe.1G454600_v2.0.a1
pyrus_communis pycom15g09180
rosa_chinensis RchiOBHm_Chr6g0305561
rosa_laevigata RLG00000010877
rosa_multiflora Rmu_co8430547.1_g000001 Rmu_sc0000841.1_g000002 Rmu_sc0001153.1_g000005
rosa_roxburghii Rroxscaffold_7G00162590
rosa_rugosa Rorug06G0341700
rosa_samantha Rh6AG453700 Rh6BG447900 Rh6DG454000
rosa_wichuraiana Rw6G039540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 669
AccII CGCG 1 cut(s) 465
AciI CCGC 2 cut(s) 304, 360
AcsI RAATTY 2 cut(s) 93, 968
AfaI GTAC 4 cut(s) 140, 290, 427, 837
AfiI CCNNNNNNNGG 1 cut(s) 679
AgsI TTSAA 6 cut(s) 344, 485, 509, 803, 812, 1067
AjiI CACGTC 1 cut(s) 662
AjnI CCWGG 3 cut(s) 619, 861, 928
AluBI AGCT 9 cut(s) 253, 260, 377, 461, 478, 747, 808, 1027, 1070
AluI AGCT 9 cut(s) 253, 260, 377, 461, 478, 747, 808, 1027, 1070
Alw21I GWGCWC 2 cut(s) 262, 480
Alw26I GTCTC 1 cut(s) 325
Ama87I CYCGRG 1 cut(s) 578
ApeKI GCWGC 4 cut(s) 307, 549, 1027, 1086
ApoI RAATTY 2 cut(s) 93, 968
AsuC2I CCSGG 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 672
BanI GGYRCC 1 cut(s) 669
BanII GRGCYC 3 cut(s) 262, 480, 737
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 2 cut(s) 262, 480
BbvI GCAGC 4 cut(s) 294, 561, 1014, 1073
BcgI CGANNNNNNTGC 2 cut(s) 925, 959
BciT130I CCWGG 3 cut(s) 621, 863, 930
BclI TGATCA 3 cut(s) 370, 391, 676
BcnI CCSGG 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 2 cut(s) 782, 1022
BfmI CTRYAG 2 cut(s) 311, 547
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 5 cut(s) 305, 308, 550, 1028, 1087
BlsI GCNGC 5 cut(s) 306, 309, 551, 1029, 1088
Bme1390I CCNGG 4 cut(s) 621, 667, 863, 930
BmeT110I CYCGRG 1 cut(s) 578
BmgBI CACGTC 1 cut(s) 662
BmiI GGNNCC 2 cut(s) 671, 736
BmrFI CCNGG 4 cut(s) 621, 667, 863, 930
BmsI GCATC 4 cut(s) 154, 480, 693, 811
BpiI GAAGAC 1 cut(s) 26
BpuEI CTTGAG 2 cut(s) 284, 791
BpuMI CCSGG 1 cut(s) 667
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 862, 928
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bsc4I CCNNNNNNNGG 1 cut(s) 679
Bse1I ACTGG 1 cut(s) 447
Bse3DI GCAATG 3 cut(s) 132, 337, 795
BseBI CCWGG 3 cut(s) 621, 863, 930
BseDI CCNNGG 2 cut(s) 862, 928
BseGI GGATG 5 cut(s) 169, 415, 883, 894, 988
BseLI CCNNNNNNNGG 1 cut(s) 679
BseMI GCAATG 3 cut(s) 132, 337, 795
BseNI ACTGG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 4 cut(s) 294, 561, 1014, 1073
BseYI CCCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 669
BsiHKAI GWGCWC 2 cut(s) 262, 480
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 2 cut(s) 438, 666
BslFI GGGAC 2 cut(s) 588, 672
BslI CCNNNNNNNGG 1 cut(s) 679
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 2 cut(s) 588, 672
BsmI GAATGC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 4 cut(s) 262, 480, 672, 737
Bsp143I GATC 6 cut(s) 216, 370, 391, 649, 676, 942
Bsp68I TCGCGA 1 cut(s) 465
BspACI CCGC 2 cut(s) 304, 360
BspFNI CGCG 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 671, 736
BspMAI CTGCAG 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 669
BspTNI GGTCTC 1 cut(s) 325
BsrDI GCAATG 3 cut(s) 132, 337, 795
BsrI ACTGG 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 862, 928
BssMI GATC 6 cut(s) 216, 370, 391, 649, 676, 942
Bst2UI CCWGG 3 cut(s) 621, 863, 930
Bst4CI ACNGT 2 cut(s) 315, 430
BstC8I GCNNGC 4 cut(s) 240, 244, 463, 547
BstDEI CTNAG 1 cut(s) 6
BstENI CCTNNNNNAGG 1 cut(s) 677
BstF5I GGATG 5 cut(s) 169, 415, 883, 894, 988
BstFNI CGCG 1 cut(s) 465
BstKTI GATC 6 cut(s) 219, 373, 394, 652, 679, 945
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 6 cut(s) 216, 370, 391, 649, 676, 942
BstMWI GCNNNNNNNGC 5 cut(s) 443, 467, 712, 785, 1027
BstNI CCWGG 3 cut(s) 621, 863, 930
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 4 cut(s) 619, 665, 861, 928
BstSFI CTRYAG 2 cut(s) 311, 547
BstSLI GKGCMC 1 cut(s) 672
BstUI CGCG 1 cut(s) 465
BstV1I GCAGC 4 cut(s) 294, 561, 1014, 1073
BstV2I GAAGAC 1 cut(s) 26
BtrI CACGTC 1 cut(s) 662
BtsCI GGATG 5 cut(s) 169, 415, 883, 894, 988
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 226
BtuMI TCGCGA 1 cut(s) 465
Cac8I GCNNGC 4 cut(s) 240, 244, 463, 547
Csp6I GTAC 4 cut(s) 139, 289, 426, 836
CviAII CATG 4 cut(s) 243, 554, 916, 1018
CviQI GTAC 4 cut(s) 139, 289, 426, 836
DdeI CTNAG 1 cut(s) 6
DpnI GATC 6 cut(s) 218, 372, 393, 651, 678, 944
DpnII GATC 6 cut(s) 216, 370, 391, 649, 676, 942
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
Ecl136II GAGCTC 2 cut(s) 260, 478
Eco24I GRGCYC 3 cut(s) 262, 480, 737
Eco31I GGTCTC 1 cut(s) 325
Eco53kI GAGCTC 2 cut(s) 260, 478
Eco88I CYCGRG 1 cut(s) 578
EcoICRI GAGCTC 2 cut(s) 260, 478
EcoNI CCTNNNNNAGG 1 cut(s) 677
EcoRI GAATTC 1 cut(s) 968
EcoRII CCWGG 3 cut(s) 619, 861, 928
EcoT38I GRGCYC 3 cut(s) 262, 480, 737
FaeI CATG 4 cut(s) 246, 557, 919, 1021
FaqI GGGAC 2 cut(s) 588, 672
FatI CATG 4 cut(s) 242, 553, 915, 1017
FbaI TGATCA 3 cut(s) 370, 391, 676
Fnu4HI GCNGC 5 cut(s) 305, 308, 550, 1028, 1087
FokI GGATG 5 cut(s) 176, 422, 890, 901, 995
FriOI GRGCYC 3 cut(s) 262, 480, 737
Fsp4HI GCNGC 5 cut(s) 305, 308, 550, 1028, 1087
FspBI CTAG 2 cut(s) 782, 1022
GluI GCNGC 5 cut(s) 305, 308, 550, 1028, 1087
GsaI CCCAGC 1 cut(s) 200
HapII CCGG 2 cut(s) 438, 666
Hin1II CATG 4 cut(s) 246, 557, 919, 1021
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 5 cut(s) 147, 280, 576, 590, 719
HpaI GTTAAC 1 cut(s) 952
HpaII CCGG 2 cut(s) 438, 666
Hpy166II GTNNAC 2 cut(s) 141, 952
Hpy188I TCNGA 3 cut(s) 295, 396, 1078
Hpy188III TCNNGA 7 cut(s) 98, 263, 464, 485, 686, 770, 803
Hpy8I GTNNAC 2 cut(s) 141, 952
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 315, 430
HpyCH4IV ACGT 2 cut(s) 661, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 443, 467, 712, 785, 1027
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 661, 758
Hsp92II CATG 4 cut(s) 246, 557, 919, 1021
Ksp22I TGATCA 3 cut(s) 370, 391, 676
KspAI GTTAAC 1 cut(s) 952
Kzo9I GATC 6 cut(s) 216, 370, 391, 649, 676, 942
LmnI GCTCC 4 cut(s) 77, 257, 740, 793
Lsp1109I GCAGC 4 cut(s) 294, 561, 1014, 1073
LweI GCATC 4 cut(s) 154, 480, 693, 811
MaeI CTAG 2 cut(s) 782, 1022
MaeII ACGT 2 cut(s) 661, 758
MalI GATC 6 cut(s) 218, 372, 393, 651, 678, 944
MboI GATC 6 cut(s) 216, 370, 391, 649, 676, 942
MboII GAAGA 3 cut(s) 26, 644, 931
MhlI GDGCHC 4 cut(s) 262, 480, 672, 737
MluCI AATT 4 cut(s) 93, 504, 624, 968
MlyI GAGTC 3 cut(s) 570, 584, 713
MmeI TCCRAC 1 cut(s) 381
MseI TTAA 2 cut(s) 743, 951
MspI CCGG 2 cut(s) 438, 666
MspR9I CCNGG 4 cut(s) 621, 667, 863, 930
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 3 cut(s) 621, 863, 930
MvnI CGCG 1 cut(s) 465
MwoI GCNNNNNNNGC 5 cut(s) 443, 467, 712, 785, 1027
NciI CCSGG 1 cut(s) 667
NdeII GATC 6 cut(s) 216, 370, 391, 649, 676, 942
NlaIII CATG 4 cut(s) 246, 557, 919, 1021
NlaIV GGNNCC 2 cut(s) 671, 736
NruI TCGCGA 1 cut(s) 465
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 578
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 147, 280
PkrI GCNGC 5 cut(s) 306, 309, 551, 1029, 1088
PleI GAGTC 3 cut(s) 570, 584, 713
PpsI GAGTC 3 cut(s) 570, 584, 713
Psp124BI GAGCTC 2 cut(s) 262, 480
Psp6I CCWGG 3 cut(s) 619, 861, 928
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 3 cut(s) 619, 861, 928
PspN4I GGNNCC 2 cut(s) 671, 736
PspXI VCTCGAGB 1 cut(s) 578
PstI CTGCAG 1 cut(s) 551
RruI TCGCGA 1 cut(s) 465
RsaI GTAC 4 cut(s) 140, 290, 427, 837
RsaNI GTAC 4 cut(s) 139, 289, 426, 836
SacI GAGCTC 2 cut(s) 262, 480
SaqAI TTAA 2 cut(s) 743, 951
SatI GCNGC 5 cut(s) 305, 308, 550, 1028, 1087
Sau3AI GATC 6 cut(s) 216, 370, 391, 649, 676, 942
SchI GAGTC 3 cut(s) 570, 584, 713
ScrFI CCNGG 4 cut(s) 621, 667, 863, 930
SduI GDGCHC 4 cut(s) 262, 480, 672, 737
SfaNI GCATC 4 cut(s) 154, 480, 693, 811
SfcI CTRYAG 2 cut(s) 311, 547
Sfr274I CTCGAG 1 cut(s) 578
SlaI CTCGAG 1 cut(s) 578
SmlI CTYRAG 3 cut(s) 263, 578, 770
SmoI CTYRAG 3 cut(s) 263, 578, 770
SphI GCATGC 1 cut(s) 246
Sse9I AATT 4 cut(s) 93, 504, 624, 968
SsiI CCGC 2 cut(s) 304, 360
SspMI CTAG 2 cut(s) 782, 1022
SstI GAGCTC 2 cut(s) 262, 480
StyD4I CCNGG 4 cut(s) 619, 665, 861, 928
TaaI ACNGT 2 cut(s) 315, 430
TaiI ACGT 2 cut(s) 664, 761
TaqI TCGA 6 cut(s) 145, 181, 579, 687, 884, 945
TaqII GACCGA 1 cut(s) 307
TasI AATT 4 cut(s) 93, 504, 624, 968
TatI WGTACW 1 cut(s) 835
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 2 cut(s) 147, 280
Tru1I TTAA 2 cut(s) 743, 951
Tru9I TTAA 2 cut(s) 743, 951
TscAI CASTG 2 cut(s) 87, 226
TseI GCWGC 4 cut(s) 307, 549, 1027, 1086
TspDTI ATGAA 2 cut(s) 725, 932
TspRI CASTG 2 cut(s) 87, 226
XagI CCTNNNNNAGG 1 cut(s) 677
XapI RAATTY 2 cut(s) 93, 968
XceI RCATGY 1 cut(s) 246
XhoI CTCGAG 1 cut(s) 578
XspI CTAG 2 cut(s) 782, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.