FvH4_2g36890

JAB/MPN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011166
Physical Location & Seq
Reverse (-)
26941469 .. 26945209
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36890.t2

Sequence Viewer

Length: 1083 bp
ATGGATGCGGAAATAGCGCAGAAAACGTGGGAGCTGGAGAACAACATAGTTCCGATGGACACTCCTCCGGCGATGAGCAAGACCGACCCTTCGGCCGACGCCATCTTCTACTACGACGAGGCGGCGCAGACGAAGTTCCAGCAGGAGAAGCCCTGGGTTAACGACCCCCACTTCTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTCCTCAAGATGGTCGTCCACGCGCGCTCCGGTGGGACCATCGAGGTCATGGGCCTCATGCAGGGCAAGACCGACGGCGACGCCATCATCGTCATGGACGCGTTTGCTTTGCCGGTCGAGGGGACCGAGACTAGGGTTAATGCCCAGGCCGATGCCTATGAGTATATGGTTGATTATTCCCAGACTAACAAACAGGCGGGGCGACTGGAGAATGTTGTTGGATGGTACCATTCTCACCCTGGTTATGGATGCTGGCTTTCGGGTATTGATGTTTCAACTCAGATGTTGAACCAGCAATTTCAGGAGCCCTTCTTGGCTGTTGTTATTGACCCCACTCGGACAGTGTCTGCTGGGAAGGTTGACATCGGTGCGTTCAGGACATACCCAGAGGGATACAAGCCTCCAGATGATCCCATCTCCGAGTATCAGACCATTCCTCTCAACAAAATTGAGGACTTTGGTGTGCACTGTAAACAGTATTACTCTCTGGATATCACTTATTTCAAGTCTTGCCTTGACTCCCACCTCTTGGATCTGCTCTGGAATAAGTATTGGGTGAATACTCTATCCTCCTCACCTTTGTTGGGTAATGGAGACTATGTTGCAGGACAAATTTCGGATTTAGCTGAAAAGCTGGAGCAAGCAGAGAATCATTTGTCTCATTCCCGCTTTGGACCATTAGTAACACCCACACAACGAAAGAAGGATCAGGAAGAATCACAACTTGCTAAAATTACTCGGGACAGTGCAAAGATAACTGTGGAGCAAGTGCATGGTCTGATGTCACAGGTTATCAAGGACATTCTTTTCAACTCTGTACAGCAATCCAACAAATCCAACACCGAACCATCTGGCCCTGAGCCAATGATTGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000338 GO:0003002 GO:0003006 GO:0006109 GO:0006464 GO:0006508 GO:0006807 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008152 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009893 GO:0009894 GO:0009896 GO:0009908 GO:0009987 GO:0010033 GO:0010093 GO:0010099 GO:0010100 GO:0010387 GO:0010389 GO:0010564 GO:0010565 GO:0010604 GO:0010971 GO:0016043 GO:0019222 GO:0019538 GO:0022414 GO:0022607 GO:0030656 GO:0031323 GO:0031326 GO:0031347 GO:0032501 GO:0032502 GO:0034622 GO:0036211 GO:0042176 GO:0042221 GO:0043170 GO:0043255 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045732 GO:0045787 GO:0045931 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051196 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051726 GO:0060255 GO:0061458 GO:0062012 GO:0065003 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090068 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1901564 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751 GO:1905392 GO:1905393 GO:2000026 GO:2000030 GO:2000082
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
JAB

Protein Analysis

361

Amino Acids

40.35

Weight (kDa)

4.93

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 59 - 170 1.4e-36 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
CSN5_C PF18323 258 - 338 3.4e-29 Cop9 signalosome subunit 5 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011166)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22920 AT1G22920 AT1G71230
fragaria_vesca FvH4_2g36890 FvH4_2g36890 FvH4_2g36890
malus_domestica MD08G1130400.v1.1 MD15G1108500.v1.1
prunus_persica Prupe.1G460800_v2.0.a1
pyrus_communis pycom08g10950
rosa_chinensis RchiOBHm_Chr6g0304891
rosa_laevigata RLG00000010941
rosa_multiflora Rmu_ssc0000278.1_g000004
rosa_roxburghii Rroxscaffold_7G00163370
rosa_rugosa Rorug06G0336100
rosa_samantha Rh6AG447300 Rh6BG454200 Rh6CG460800 Rh6DG447800
rosa_wichuraiana Rw6G038940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 429
AccB7I CCANNNNNTGG 1 cut(s) 733
AccII CGCG 5 cut(s) 183, 203, 227, 229, 305
AciI CCGC 5 cut(s) 8, 122, 195, 401, 871
AclWI GGATC 3 cut(s) 608, 744, 918
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 816
AcyI GRCGYC 2 cut(s) 99, 285
AfaI GTAC 2 cut(s) 431, 1023
AfiI CCNNNNNNNGG 7 cut(s) 214, 265, 323, 336, 449, 733, 788
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 6 cut(s) 178, 480, 493, 709, 1015, 1076
AjnI CCWGG 3 cut(s) 152, 348, 442
AluBI AGCT 3 cut(s) 34, 830, 838
AluI AGCT 3 cut(s) 34, 830, 838
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 3 cut(s) 326, 792, 867
Alw44I GTGCAC 1 cut(s) 668
AlwI GGATC 3 cut(s) 608, 744, 918
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 942
AoxI GGCC 4 cut(s) 93, 256, 351, 1057
ApaLI GTGCAC 1 cut(s) 668
ApoI RAATTY 1 cut(s) 816
ArsI GACNNNNNNTTYG 2 cut(s) 73, 105
Asp718I GGTACC 1 cut(s) 429
AspLEI GCGC 6 cut(s) 19, 127, 183, 205, 229, 231
AspS9I GGNCC 5 cut(s) 240, 256, 327, 878, 1058
AsuHPI GGTGA 3 cut(s) 431, 771, 772
AvaI CYCGRG 1 cut(s) 942
AvaII GGWCC 3 cut(s) 240, 327, 878
BaeGI GKGCMC 1 cut(s) 672
BanI GGYRCC 1 cut(s) 429
BanII GRGCYC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 672
BccI CCATC 8 cut(s) 49, 110, 208, 251, 296, 420, 626, 1060
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 3 cut(s) 154, 350, 444
BciVI GTATCC 1 cut(s) 590
BcoDI GTCTC 3 cut(s) 326, 792, 867
BfaI CTAG 1 cut(s) 336
BfuI GTATCC 1 cut(s) 590
BglII AGATCT 1 cut(s) 189
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 3 cut(s) 154, 350, 444
Bme18I GGWCC 3 cut(s) 240, 327, 878
BmeT110I CYCGRG 1 cut(s) 942
BmgT120I GGNCC 5 cut(s) 240, 256, 327, 878, 1058
BmiI GGNNCC 4 cut(s) 241, 328, 431, 510
BmrFI CCNGG 3 cut(s) 154, 350, 444
BmsI GCATC 2 cut(s) 346, 443
BpmI CTGGAG 4 cut(s) 56, 431, 591, 860
Bpu10I CCTNAGC 1 cut(s) 1062
BpuEI CTTGAG 1 cut(s) 194
BsaHI GRCGYC 2 cut(s) 99, 285
BsaJI CCNNGG 4 cut(s) 152, 153, 348, 442
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 6 cut(s) 189, 215, 219, 245, 789, 819
Bsc4I CCNNNNNNNGG 7 cut(s) 214, 265, 323, 336, 449, 733, 788
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 414
BseBI CCWGG 3 cut(s) 154, 350, 444
BseDI CCNNGG 4 cut(s) 152, 153, 348, 442
BseGI GGATG 3 cut(s) 10, 431, 458
BseLI CCNNNNNNNGG 7 cut(s) 214, 265, 323, 336, 449, 733, 788
BseMII CTCAG 2 cut(s) 497, 1053
BseNI ACTGG 1 cut(s) 414
BsePI GCGCGC 1 cut(s) 227
BseRI GAGGAG 3 cut(s) 54, 197, 766
BseSI GKGCMC 1 cut(s) 672
BseX3I CGGCCG 1 cut(s) 93
BseYI CCCAGC 1 cut(s) 554
Bsh1236I CGCG 5 cut(s) 183, 203, 227, 229, 305
Bsh1285I CGRYCG 2 cut(s) 96, 321
BshFI GGCC 4 cut(s) 95, 258, 353, 1059
BshNI GGYRCC 1 cut(s) 429
BsiEI CGRYCG 2 cut(s) 96, 321
BsiHKAI GWGCWC 1 cut(s) 672
BsiHKCI CYCGRG 1 cut(s) 942
BsiSI CCGG 3 cut(s) 68, 234, 317
BslFI GGGAC 3 cut(s) 253, 340, 959
BslI CCNNNNNNNGG 7 cut(s) 214, 265, 323, 336, 449, 733, 788
BsmAI GTCTC 3 cut(s) 326, 792, 867
BsmFI GGGAC 3 cut(s) 253, 340, 959
BsnI GGCC 4 cut(s) 95, 258, 353, 1059
BsoBI CYCGRG 1 cut(s) 942
Bsp1286I GDGCHC 2 cut(s) 513, 672
Bsp1407I TGTACA 1 cut(s) 1021
Bsp143I GATC 4 cut(s) 189, 613, 736, 910
BspACI CCGC 5 cut(s) 8, 122, 195, 401, 871
BspANI GGCC 4 cut(s) 95, 258, 353, 1059
BspCNI CTCAG 2 cut(s) 496, 1054
BspFNI CGCG 5 cut(s) 183, 203, 227, 229, 305
BspLI GGNNCC 4 cut(s) 241, 328, 431, 510
BspPI GGATC 3 cut(s) 608, 744, 918
BspT107I GGYRCC 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 1021
BsrI ACTGG 1 cut(s) 414
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 4 cut(s) 152, 153, 348, 442
BssHII GCGCGC 1 cut(s) 227
BssMI GATC 4 cut(s) 189, 613, 736, 910
BssNI GRCGYC 2 cut(s) 99, 285
Bst2UI CCWGG 3 cut(s) 154, 350, 444
Bst4CI ACNGT 5 cut(s) 547, 674, 681, 950, 964
BstACI GRCGYC 2 cut(s) 99, 285
BstAUI TGTACA 1 cut(s) 1021
BstC8I GCNNGC 3 cut(s) 229, 458, 846
BstDEI CTNAG 2 cut(s) 483, 1062
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 3 cut(s) 10, 431, 458
BstFNI CGCG 5 cut(s) 183, 203, 227, 229, 305
BstHHI GCGC 6 cut(s) 19, 127, 183, 205, 229, 231
BstKTI GATC 4 cut(s) 192, 616, 739, 913
BstMAI GTCTC 3 cut(s) 326, 792, 867
BstMBI GATC 4 cut(s) 189, 613, 736, 910
BstMCI CGRYCG 2 cut(s) 96, 321
BstMWI GCNNNNNNNGC 2 cut(s) 14, 148
BstNI CCWGG 3 cut(s) 154, 350, 444
BstSCI CCNGG 3 cut(s) 152, 348, 442
BstSLI GKGCMC 1 cut(s) 672
BstUI CGCG 5 cut(s) 183, 203, 227, 229, 305
BstX2I RGATCY 2 cut(s) 189, 736
BstYI RGATCY 2 cut(s) 189, 736
BstZI CGGCCG 1 cut(s) 93
BsuI GTATCC 1 cut(s) 590
BsuRI GGCC 4 cut(s) 95, 258, 353, 1059
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 3 cut(s) 10, 431, 458
BtsIMutI CAGTG 3 cut(s) 552, 670, 955
Cac8I GCNNGC 3 cut(s) 229, 458, 846
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 6 cut(s) 19, 127, 183, 205, 229, 231
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 5 cut(s) 240, 256, 327, 878, 1058
CseI GACGC 4 cut(s) 107, 172, 293, 311
Csp6I GTAC 2 cut(s) 430, 1022
CviAII CATG 4 cut(s) 253, 262, 298, 977
CviQI GTAC 2 cut(s) 430, 1022
DdeI CTNAG 2 cut(s) 483, 1062
DpnI GATC 4 cut(s) 191, 615, 738, 912
DpnII GATC 4 cut(s) 189, 613, 736, 910
EaeI YGGCCR 1 cut(s) 93
EagI CGGCCG 1 cut(s) 93
EclXI CGGCCG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 513
Eco32I GATATC 1 cut(s) 697
Eco47I GGWCC 3 cut(s) 240, 327, 878
Eco52I CGGCCG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 942
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoRII CCWGG 3 cut(s) 152, 348, 442
EcoRV GATATC 1 cut(s) 697
EcoT38I GRGCYC 1 cut(s) 513
FaeI CATG 4 cut(s) 256, 265, 301, 980
FaqI GGGAC 3 cut(s) 253, 340, 959
FatI CATG 4 cut(s) 252, 261, 297, 976
FauI CCCGC 2 cut(s) 394, 878
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 3 cut(s) 17, 438, 465
FriOI GRGCYC 1 cut(s) 513
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 336
GlaI GCGC 6 cut(s) 18, 126, 182, 204, 228, 230
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 558
GsuI CTGGAG 4 cut(s) 56, 431, 591, 860
HaeIII GGCC 4 cut(s) 95, 258, 353, 1059
HapII CCGG 3 cut(s) 68, 234, 317
HgaI GACGC 4 cut(s) 107, 172, 293, 311
HhaI GCGC 6 cut(s) 19, 127, 183, 205, 229, 231
Hin1I GRCGYC 2 cut(s) 99, 285
Hin1II CATG 4 cut(s) 256, 265, 301, 980
Hin6I GCGC 6 cut(s) 17, 125, 181, 203, 227, 229
HinP1I GCGC 6 cut(s) 17, 125, 181, 203, 227, 229
HincII GTYRAC 2 cut(s) 160, 565
HindII GTYRAC 2 cut(s) 160, 565
HinfI GANTC 3 cut(s) 722, 853, 920
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 3 cut(s) 68, 234, 317
HphI GGTGA 3 cut(s) 431, 771, 772
Hpy166II GTNNAC 5 cut(s) 160, 223, 565, 670, 677
Hpy188I TCNGA 7 cut(s) 54, 486, 543, 625, 633, 823, 984
Hpy188III TCNNGA 9 cut(s) 187, 211, 506, 580, 608, 692, 745, 914, 944
Hpy8I GTNNAC 5 cut(s) 160, 223, 565, 670, 677
Hpy99I CGWCG 4 cut(s) 101, 119, 281, 287
HpyAV CCTTC 4 cut(s) 99, 523, 553, 901
HpyCH4III ACNGT 5 cut(s) 547, 674, 681, 950, 964
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 5 cut(s) 265, 670, 809, 953, 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 148
HpyF3I CTNAG 2 cut(s) 483, 1062
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 2 cut(s) 99, 285
Hsp92II CATG 4 cut(s) 256, 265, 301, 980
HspAI GCGC 6 cut(s) 17, 125, 181, 203, 227, 229
KpnI GGTACC 1 cut(s) 433
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 4 cut(s) 189, 613, 736, 910
LmnI GCTCC 6 cut(s) 31, 210, 236, 508, 841, 967
LweI GCATC 2 cut(s) 346, 443
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 886, 987
MalI GATC 4 cut(s) 191, 615, 738, 912
MboI GATC 4 cut(s) 189, 613, 736, 910
MboII GAAGA 3 cut(s) 97, 166, 929
MflI RGATCY 2 cut(s) 189, 736
MhlI GDGCHC 2 cut(s) 513, 672
MluCI AATT 4 cut(s) 500, 651, 816, 936
MluI ACGCGT 1 cut(s) 303
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 3 cut(s) 403, 1056, 1065
MseI TTAA 2 cut(s) 159, 342
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 3 cut(s) 68, 234, 317
MspR9I CCNGG 3 cut(s) 154, 350, 444
MvaI CCWGG 3 cut(s) 154, 350, 444
MvnI CGCG 5 cut(s) 183, 203, 227, 229, 305
MwoI GCNNNNNNNGC 2 cut(s) 14, 148
NdeII GATC 4 cut(s) 189, 613, 736, 910
NlaIII CATG 4 cut(s) 256, 265, 301, 980
NlaIV GGNNCC 4 cut(s) 241, 328, 431, 510
NmuCI GTSAC 1 cut(s) 987
PasI CCCWGGG 1 cut(s) 153
PauI GCGCGC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 2 cut(s) 291, 327
PfeI GAWTC 2 cut(s) 853, 920
PflFI GACNNNGTC 1 cut(s) 547
PflMI CCANNNNNTGG 1 cut(s) 733
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
Psp6I CCWGG 3 cut(s) 152, 348, 442
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 3 cut(s) 152, 348, 442
PspN4I GGNNCC 4 cut(s) 241, 328, 431, 510
PspPI GGNCC 5 cut(s) 240, 256, 327, 878, 1058
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 2 cut(s) 189, 736
PsyI GACNNNGTC 1 cut(s) 547
PteI GCGCGC 1 cut(s) 227
RsaI GTAC 2 cut(s) 431, 1023
RsaNI GTAC 2 cut(s) 430, 1022
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 2 cut(s) 159, 342
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 4 cut(s) 189, 613, 736, 910
Sau96I GGNCC 5 cut(s) 240, 256, 327, 878, 1058
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 3 cut(s) 154, 350, 444
SduI GDGCHC 2 cut(s) 513, 672
SetI ASST 9 cut(s) 29, 36, 252, 564, 732, 784, 832, 840, 996
SfaNI GCATC 2 cut(s) 346, 443
SinI GGWCC 3 cut(s) 240, 327, 878
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 500, 651, 816, 936
SsiI CCGC 5 cut(s) 8, 122, 195, 401, 871
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 3 cut(s) 152, 348, 442
TaaI ACNGT 5 cut(s) 547, 674, 681, 950, 964
TaiI ACGT 1 cut(s) 29
TaqI TCGA 2 cut(s) 246, 321
TaqII GACCGA 3 cut(s) 98, 290, 344
TasI AATT 4 cut(s) 500, 651, 816, 936
TatI WGTACW 1 cut(s) 1021
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 2 cut(s) 853, 920
Tru1I TTAA 2 cut(s) 159, 342
Tru9I TTAA 2 cut(s) 159, 342
TscAI CASTG 3 cut(s) 552, 677, 955
TseFI GTSAC 1 cut(s) 987
Tsp45I GTSAC 1 cut(s) 987
TspRI CASTG 3 cut(s) 552, 677, 955
Tth111I GACNNNGTC 1 cut(s) 547
Van91I CCANNNNNTGG 1 cut(s) 733
VneI GTGCAC 1 cut(s) 668
VpaK11BI GGWCC 3 cut(s) 240, 327, 878
XagI CCTNNNNNAGG 1 cut(s) 263
XapI RAATTY 1 cut(s) 816
XcmI CCANNNNNNNNNTGG 3 cut(s) 250, 295, 440
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.