MD08G1130400.v1.1

COP9 signalosome complex subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
12290645 .. 12293735
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1130400.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGGACGCGCAAATAGCCCAGCAGACATGGGAGCTCGAGAACAACGTAATCCCCATGGACACGCCGCCGAGCGTGGCGAAGCCGAAGGCGGACCCGACGGCCGACGCCATATTCTACTACGACGAGGCGGCTCAGGTCAAGTTCCAGCAGGAGAAGCCCTGGGCCAACGACCCCCACTACTTCAAGCGCGTCAAGATCTCCGCCCTCGCGCTCTTGAAGATGGTTGTGCACGCCCGGTCTGGCGGGACCATCGAGGTCATGGGCCTCATGCAGGGCAAGACCGACGGCGACGCCATTATCGTCATGGACGCTTTTGCTTTGCCTGTTGAAGGGACTGAGACTAGGGTTAATGCTCAGGCTGATGCCTATGAGTATATGGTGGATTATTCCCAAACCAATAAGCAGGCGGGGCGGTTGGAGAATGTGGTTGGGTGGTACCATTCTCATCCGGGTTATGGATGCTGGCTCTCGGGTATTGATGTTTCGACGCAGATGCTTAACCAGCAATATCAGGAGCCCTTTTTGGCTGTTGTTATTGATCCAACTCGGACAGTGTCTGCTGGAAAAGTTGACATTGGTGCATTCAGGACGTACCCAGATGGATATAAGCCTCCAGACGATCCTGTCTCCGAGTATCAGACCATTCCTCTGAACAAAATTGAGGACTTTGGTGTTCACTGTAAACAGTATTATTCTCTGGATATCACTTATTTCAAGTCTTCTCTTGACACTCACCTCTTGGATCTGCTCTGGAACAAGTATTGGGTGAATACTCTTTCTTCCTCACCTTTATTGGGTAATGGAGACTATGTTGCTGGACAAATTTCTGATCTAGCTGAAAAGCTAGAGCAAGCGGAGAATCATTTGGCTCATTCTCGCTTTGGGCCATTAATAACACCCCCACAAAGAAAGAGAGAGGAAGAATCCCAACTTGCCAAAATTACTCGTGACAGTGCAAAGATAACTGTCGAGCAGGTGCATGGTCTGATGTCACAGGTTATCAAGGACATTCTTTTCAATTCTGTACGCCAATCCAACAGATCTCTCCTACAGCCATCTCTCACAGAACCATCTTCTGACCCCGAACCAATGGTTGAAAGTTGA
Functional Annotation

Protein Analysis

368

Amino Acids

41.13

Weight (kDa)

4.98

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 60 - 172 6e-37 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
CSN5_C PF18323 260 - 340 1.5e-28 Cop9 signalosome subunit 5 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011166)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 964
AasI GACNNNNNNGTC 1 cut(s) 623
Acc36I ACCTGC 1 cut(s) 964
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 435
AccII CGCG 3 cut(s) 8, 189, 209
AciI CCGC 8 cut(s) 65, 89, 128, 201, 243, 407, 412, 854
AclWI GGATC 3 cut(s) 533, 614, 750
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 822
AcyI GRCGYC 2 cut(s) 105, 291
AfaI GTAC 3 cut(s) 437, 593, 1026
AfiI CCNNNNNNNGG 4 cut(s) 271, 329, 455, 794
AgsI TTSAA 6 cut(s) 184, 217, 329, 715, 1018, 1097
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 3 cut(s) 34, 836, 844
AluI AGCT 3 cut(s) 34, 836, 844
Alw21I GWGCWC 2 cut(s) 36, 231
Alw26I GTCTC 3 cut(s) 332, 631, 798
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 3 cut(s) 533, 614, 750
AlwNI CAGNNNCTG 1 cut(s) 557
Ama87I CYCGRG 2 cut(s) 35, 469
AoxI GGCC 4 cut(s) 99, 162, 262, 884
ApaLI GTGCAC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 822
AseI ATTAAT 1 cut(s) 890
Asp718I GGTACC 1 cut(s) 435
AspLEI GCGC 3 cut(s) 10, 189, 211
AspS9I GGNCC 5 cut(s) 91, 162, 246, 262, 884
AsuC2I CCSGG 2 cut(s) 235, 450
AsuHPI GGTGA 3 cut(s) 725, 777, 778
AvaI CYCGRG 2 cut(s) 35, 469
AvaII GGWCC 2 cut(s) 91, 246
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 435
BanII GRGCYC 2 cut(s) 36, 519
BauI CACGAG 1 cut(s) 945
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 2 cut(s) 36, 231
BccI CCATC 5 cut(s) 214, 257, 593, 1063, 1078
BceAI ACGGC 2 cut(s) 114, 301
BcgI CGANNNNNNTGC 2 cut(s) 475, 509
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 2 cut(s) 235, 450
BcoDI GTCTC 3 cut(s) 332, 631, 798
BfaI CTAG 3 cut(s) 342, 833, 845
BfmI CTRYAG 1 cut(s) 1049
BfuAI ACCTGC 1 cut(s) 964
BglII AGATCT 2 cut(s) 195, 1040
BisI GCNGC 2 cut(s) 65, 129
BlsI GCNGC 2 cut(s) 66, 130
Bme1390I CCNGG 3 cut(s) 160, 235, 450
Bme18I GGWCC 2 cut(s) 91, 246
BmeT110I CYCGRG 2 cut(s) 35, 469
BmgT120I GGNCC 5 cut(s) 91, 162, 246, 262, 884
BmiI GGNNCC 4 cut(s) 93, 247, 437, 516
BmrFI CCNGG 3 cut(s) 160, 235, 450
BmsI GCATC 3 cut(s) 352, 449, 483
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 1 cut(s) 597
Bpu10I CCTNAGC 2 cut(s) 132, 354
BpuMI CCSGG 2 cut(s) 235, 450
BsaHI GRCGYC 2 cut(s) 105, 291
BsaJI CCNNGG 3 cut(s) 54, 158, 159
BsaXI ACNNNNNCTCC 2 cut(s) 795, 825
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 329, 455, 794
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 3 cut(s) 54, 158, 159
BseGI GGATG 2 cut(s) 445, 464
BseLI CCNNNNNNNGG 4 cut(s) 271, 329, 455, 794
BseMII CTCAG 3 cut(s) 146, 327, 368
BseSI GKGCMC 1 cut(s) 231
BseX3I CGGCCG 1 cut(s) 99
BseYI CCCAGC 1 cut(s) 18
Bsh1236I CGCG 3 cut(s) 8, 189, 209
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 4 cut(s) 101, 164, 264, 886
BshNI GGYRCC 1 cut(s) 435
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 36, 231
BsiHKCI CYCGRG 2 cut(s) 35, 469
BsiSI CCGG 2 cut(s) 235, 449
BslFI GGGAC 2 cut(s) 259, 346
BslI CCNNNNNNNGG 4 cut(s) 271, 329, 455, 794
BsmAI GTCTC 3 cut(s) 332, 631, 798
BsmFI GGGAC 2 cut(s) 259, 346
BsmI GAATGC 1 cut(s) 581
BsnI GGCC 4 cut(s) 101, 164, 264, 886
BsoBI CYCGRG 2 cut(s) 35, 469
Bsp1286I GDGCHC 3 cut(s) 36, 231, 519
Bsp143I GATC 6 cut(s) 195, 538, 619, 742, 829, 1040
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 8 cut(s) 65, 89, 128, 201, 243, 407, 412, 854
BspANI GGCC 4 cut(s) 101, 164, 264, 886
BspCNI CTCAG 3 cut(s) 145, 328, 367
BspFNI CGCG 3 cut(s) 8, 189, 209
BspLI GGNNCC 4 cut(s) 93, 247, 437, 516
BspMI ACCTGC 1 cut(s) 964
BspPI GGATC 3 cut(s) 533, 614, 750
BspT107I GGYRCC 1 cut(s) 435
BssECI CCNNGG 3 cut(s) 54, 158, 159
BssMI GATC 6 cut(s) 195, 538, 619, 742, 829, 1040
BssNI GRCGYC 2 cut(s) 105, 291
BssSI CACGAG 1 cut(s) 945
BssT1I CCWWGG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 945
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 5 cut(s) 553, 680, 687, 953, 967
BstACI GRCGYC 2 cut(s) 105, 291
BstC8I GCNNGC 4 cut(s) 231, 405, 464, 852
BstDEI CTNAG 3 cut(s) 132, 336, 354
BstDSI CCRYGG 1 cut(s) 54
BstENI CCTNNNNNAGG 2 cut(s) 269, 327
BstF5I GGATG 2 cut(s) 445, 464
BstFNI CGCG 3 cut(s) 8, 189, 209
BstHHI GCGC 3 cut(s) 10, 189, 211
BstKTI GATC 6 cut(s) 198, 541, 622, 745, 832, 1043
BstMAI GTCTC 3 cut(s) 332, 631, 798
BstMBI GATC 6 cut(s) 195, 538, 619, 742, 829, 1040
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 4 cut(s) 14, 154, 409, 502
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 158, 233, 448
BstSFI CTRYAG 1 cut(s) 1049
BstSLI GKGCMC 1 cut(s) 231
BstUI CGCG 3 cut(s) 8, 189, 209
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 3 cut(s) 195, 742, 1040
BstYI RGATCY 3 cut(s) 195, 742, 1040
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 4 cut(s) 101, 164, 264, 886
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 445, 464
BtsIMutI CAGTG 3 cut(s) 558, 676, 958
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 4 cut(s) 231, 405, 464, 852
CaiI CAGNNNCTG 1 cut(s) 557
CfoI GCGC 3 cut(s) 10, 189, 211
Cfr13I GGNCC 5 cut(s) 91, 162, 246, 262, 884
CseI GACGC 6 cut(s) 14, 113, 178, 299, 317, 496
Csp6I GTAC 3 cut(s) 436, 592, 1025
CviAII CATG 6 cut(s) 27, 55, 259, 268, 304, 980
CviQI GTAC 3 cut(s) 436, 592, 1025
DdeI CTNAG 3 cut(s) 132, 336, 354
DpnI GATC 6 cut(s) 197, 540, 621, 744, 831, 1042
DpnII GATC 6 cut(s) 195, 538, 619, 742, 829, 1040
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 1 cut(s) 99
EagI CGGCCG 1 cut(s) 99
EciI GGCGGA 2 cut(s) 104, 190
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 36, 519
Eco32I GATATC 1 cut(s) 703
Eco47I GGWCC 2 cut(s) 91, 246
Eco52I CGGCCG 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 34
Eco88I CYCGRG 2 cut(s) 35, 469
EcoICRI GAGCTC 1 cut(s) 34
EcoNI CCTNNNNNAGG 2 cut(s) 269, 327
EcoRII CCWGG 1 cut(s) 158
EcoRV GATATC 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 36, 519
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 6 cut(s) 30, 58, 262, 271, 307, 983
FaqI GGGAC 2 cut(s) 259, 346
FatI CATG 6 cut(s) 26, 54, 258, 267, 303, 979
FauI CCCGC 2 cut(s) 236, 400
Fnu4HI GCNGC 2 cut(s) 65, 129
FokI GGATG 2 cut(s) 432, 471
FriOI GRGCYC 2 cut(s) 36, 519
Fsp4HI GCNGC 2 cut(s) 65, 129
FspBI CTAG 3 cut(s) 342, 833, 845
GlaI GCGC 3 cut(s) 9, 188, 210
GluI GCNGC 2 cut(s) 65, 129
GsaI CCCAGC 1 cut(s) 22
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 4 cut(s) 101, 164, 264, 886
HapII CCGG 2 cut(s) 235, 449
HgaI GACGC 6 cut(s) 14, 113, 178, 299, 317, 496
HhaI GCGC 3 cut(s) 10, 189, 211
Hin1I GRCGYC 2 cut(s) 105, 291
Hin1II CATG 6 cut(s) 30, 58, 262, 271, 307, 983
Hin6I GCGC 3 cut(s) 8, 187, 209
HinP1I GCGC 3 cut(s) 8, 187, 209
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 2 cut(s) 859, 923
HpaII CCGG 2 cut(s) 235, 449
HphI GGTGA 3 cut(s) 725, 777, 778
Hpy166II GTNNAC 4 cut(s) 229, 571, 676, 683
Hpy188I TCNGA 7 cut(s) 549, 631, 639, 651, 829, 987, 1078
Hpy8I GTNNAC 4 cut(s) 229, 571, 676, 683
Hpy99I CGWCG 6 cut(s) 100, 107, 125, 287, 293, 490
HpyAV CCTTC 2 cut(s) 79, 323
HpyCH4III ACNGT 5 cut(s) 553, 680, 687, 953, 967
HpyCH4IV ACGT 2 cut(s) 45, 590
HpyCH4V TGCA 5 cut(s) 229, 271, 581, 956, 979
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 154, 409, 502
HpyF3I CTNAG 3 cut(s) 132, 336, 354
HpySE526I ACGT 2 cut(s) 45, 590
Hsp92I GRCGYC 2 cut(s) 105, 291
Hsp92II CATG 6 cut(s) 30, 58, 262, 271, 307, 983
HspAI GCGC 3 cut(s) 8, 187, 209
KpnI GGTACC 1 cut(s) 439
Kzo9I GATC 6 cut(s) 195, 538, 619, 742, 829, 1040
LmnI GCTCC 2 cut(s) 31, 514
LweI GCATC 3 cut(s) 352, 449, 483
MaeI CTAG 3 cut(s) 342, 833, 845
MaeII ACGT 2 cut(s) 45, 590
MaeIII GTNAC 2 cut(s) 947, 990
MalI GATC 6 cut(s) 197, 540, 621, 744, 831, 1042
MboI GATC 6 cut(s) 195, 538, 619, 742, 829, 1040
MboII GAAGA 5 cut(s) 229, 711, 771, 932, 1065
MflI RGATCY 3 cut(s) 195, 742, 1040
MhlI GDGCHC 3 cut(s) 36, 231, 519
MluCI AATT 4 cut(s) 657, 822, 939, 1018
MmeI TCCRAC 3 cut(s) 396, 566, 1059
MseI TTAA 3 cut(s) 348, 498, 890
MspI CCGG 2 cut(s) 235, 449
MspR9I CCNGG 3 cut(s) 160, 235, 450
Mva1269I GAATGC 1 cut(s) 581
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 3 cut(s) 8, 189, 209
MwoI GCNNNNNNNGC 4 cut(s) 14, 154, 409, 502
NciI CCSGG 2 cut(s) 235, 450
NcoI CCATGG 1 cut(s) 54
NdeII GATC 6 cut(s) 195, 538, 619, 742, 829, 1040
NlaIII CATG 6 cut(s) 30, 58, 262, 271, 307, 983
NlaIV GGNNCC 4 cut(s) 93, 247, 437, 516
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 2 cut(s) 947, 990
PaeR7I CTCGAG 1 cut(s) 35
PaqCI CACCTGC 1 cut(s) 964
PasI CCCWGGG 1 cut(s) 159
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 297
PctI GAATGC 1 cut(s) 581
PfeI GAWTC 2 cut(s) 859, 923
PflFI GACNNNGTC 1 cut(s) 553
PkrI GCNGC 2 cut(s) 66, 130
PshBI ATTAAT 1 cut(s) 890
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 18
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 4 cut(s) 93, 247, 437, 516
PspPI GGNCC 5 cut(s) 91, 162, 246, 262, 884
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 3 cut(s) 195, 742, 1040
PsyI GACNNNGTC 1 cut(s) 553
RsaI GTAC 3 cut(s) 437, 593, 1026
RsaNI GTAC 3 cut(s) 436, 592, 1025
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 348, 498, 890
SatI GCNGC 2 cut(s) 65, 129
Sau3AI GATC 6 cut(s) 195, 538, 619, 742, 829, 1040
Sau96I GGNCC 5 cut(s) 91, 162, 246, 262, 884
ScrFI CCNGG 3 cut(s) 160, 235, 450
SduI GDGCHC 3 cut(s) 36, 231, 519
SfaNI GCATC 3 cut(s) 352, 449, 483
SfcI CTRYAG 1 cut(s) 1049
Sfr274I CTCGAG 1 cut(s) 35
SinI GGWCC 2 cut(s) 91, 246
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 4 cut(s) 657, 822, 939, 1018
SsiI CCGC 8 cut(s) 65, 89, 128, 201, 243, 407, 412, 854
SspMI CTAG 3 cut(s) 342, 833, 845
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 158, 233, 448
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 5 cut(s) 553, 680, 687, 953, 967
TaiI ACGT 2 cut(s) 48, 593
TaqI TCGA 4 cut(s) 36, 252, 485, 969
TaqII GACCGA 1 cut(s) 296
TasI AATT 4 cut(s) 657, 822, 939, 1018
TauI GCSGC 2 cut(s) 67, 131
TfiI GAWTC 2 cut(s) 859, 923
Tru1I TTAA 3 cut(s) 348, 498, 890
Tru9I TTAA 3 cut(s) 348, 498, 890
TscAI CASTG 3 cut(s) 558, 683, 958
TseFI GTSAC 2 cut(s) 947, 990
Tsp45I GTSAC 2 cut(s) 947, 990
TspRI CASTG 3 cut(s) 558, 683, 958
Tth111I GACNNNGTC 1 cut(s) 553
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 2 cut(s) 91, 246
VspI ATTAAT 1 cut(s) 890
XagI CCTNNNNNAGG 2 cut(s) 269, 327
XapI RAATTY 1 cut(s) 822
XcmI CCANNNNNNNNNTGG 2 cut(s) 256, 301
XhoI CTCGAG 1 cut(s) 35
XspI CTAG 3 cut(s) 342, 833, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.