Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006441

Physical Location & Seq

Genomic Coordinates Forward (+)

48797297 .. 48799418

Gene Structure 2122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0336100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCTGCTTCCTCATACCCTTTGCAGAGTGGTAATGCAAGTTGGTCTCAGTTCAGCTTTGTAGTTAGTCCTAGGGAAGTCATTCTTGGGTCCAATGTGGAGCACCAAATGTATTGCCATCTTCTTTGTGGCATTAGGAACTGTGATTTACTCGATGCGATTCGAGCCCCCTATGCCGTGGGACTGATCAAAGTGTTTAGCCTTTTAGAGTCAAAGTGGGAGCAGCTATGTCGTGATCTTGAAGATGGGTTCCCGAGTTTGGAGATTTCTAATAGTGCAATGAGGGATTCTGTTATTGAGGTTCTCGGTGGGCCTCAAGTGAAGTTGGCAAAGAGAGTTAGAGCAGTATGTGAGGGAAACAATTGGGGTGGGATTGTGAGCAAGTTGTGGCCAAATGTTCGGTATGTTAGGTGTGTTACCACTGGAAGTATGGAGCAGTATTATCCAAAACTTAAGTATTATGCTGGAGAGATACCTTTGTTGGGAGGGGACTACTTTGCTTCAGAATGCTGTGTTGGGATTAACTTGGATATCATGCAACCTCCCGATAAAACCCGATTCGTGTTGCTTCCAACTGCAGCGTATTTTGAGTTTCTTCCATTTGATATGAATGAGGCTGAGGCTACTGGTAGAGAAACAGTTGATATTTCTGGTGTTGAAGTGGGGAAGATGTATGAAGTGGTTGTCACTACTTACAGAGGATTTTACAGATACCATTTGGGTGATGTAGTGAGGGTTGTTGGTTTCTATAATTTATCTCCACTGGTGGAATTTGTGATGAGAGCACCGAAAGGTCCTGGTGAGATTATAACTGAGAGGGACTTGATGTCTGCAATGCAAAGTTTTCAGCTTGTGTTTGAAAATGTGATGGCAACAGAGATTACAGAGTTTGCAAGTTTCTTGGACATGGAGTTGAGCCCTAAACAGTTGAAGGTGTTTGTAGAAGCTAGAGAGGGAAGCAGGCTTATGCAGGAAGAGTCAGTTGTAGCTCTGAGGAGGTGTTATTCCTCCCTTGAGGATGGTTTGGGAGGCATTTACAAGGTGCAGAGAGATAGAGGTGAAGCAGGTCCTTTGATATTATCTGTTGTAAAGCCTGGTAGCTTTGATAGACTATCACAAGTAGCCATTGCGAACGGAGCATCAGCTGGTCAGTATAAGCCACCCAAGATCATAAGAAATCGTGAAGTTGTTCACTTCCTTGAAGGATTTACTGTTGTTACCATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

409

Amino Acids

45.63

Weight (kDa)

5.41

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH3	PF03321	9 - 160	1.4e-42	GH3 family N-terminal domain
GH3_M	PF23571	187 - 261	2.3e-26	GH3 family central domain
GH3_C	PF23572	274 - 395	3e-19	GH3 family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006441)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24520 AT2G24520 AT2G24520 AT2G24520
fragaria_vesca	FvH4_2g36880 FvH4_2g36880 FvH4_2g36880
malus_domestica	MD08G1130200.v1.1 MD15G1108400.v1.1
prunus_persica	Prupe.1G460700_v2.0.a1 Prupe.1G460700_v2.0.a1
pyrus_communis	pycom03g01500 pycom08g10940
rosa_chinensis	RchiOBHm_Chr6g0304901
rosa_laevigata	RLG00000010940
rosa_multiflora	Rmu_co8372769.1_g000001 Rmu_ssc0000278.1_g000001 Rmu_ssc0000278.1_g000002
rosa_roxburghii	Rroxscaffold_7G00163360
rosa_rugosa	Rorug06G0336100 Rorug06G0336100
rosa_samantha	Rh6AG447400 Rh6BG454100 Rh6CG460900 Rh6DG447900
rosa_wichuraiana	Rw6G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	809
Acc36I	ACCTGC	1 cut(s)	1055
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	770
AcuI	CTGAAG	1 cut(s)	486
AfiI	CCNNNNNNNGG	2 cut(s)	259, 482
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	5 cut(s)	242, 659, 860, 931, 1202
AhdI	GACNNNNNGTC	1 cut(s)	826
AjnI	CCWGG	2 cut(s)	796, 1093
AjuI	GAANNNNNNNTTGG	4 cut(s)	69, 101, 498, 530
AluBI	AGCT	7 cut(s)	57, 226, 850, 947, 989, 1101, 1145
AluI	AGCT	7 cut(s)	57, 226, 850, 947, 989, 1101, 1145
Alw21I	GWGCWC	2 cut(s)	105, 787
Alw26I	GTCTC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	2 cut(s)	311, 389
ApeKI	GCWGC	3 cut(s)	5, 223, 578
ApoI	RAATTY	1 cut(s)	770
Asp700I	GAANNNNTTC	2 cut(s)	81, 1188
AspA2I	CCTAGG	1 cut(s)	71
AspS9I	GGNCC	4 cut(s)	90, 311, 794, 1067
AsuHPI	GGTGA	3 cut(s)	734, 812, 1070
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	3 cut(s)	90, 794, 1067
AvrII	CCTAGG	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	464, 497
BalI	TGGCCA	1 cut(s)	391
BanII	GRGCYC	2 cut(s)	169, 920
Bbv12I	GWGCWC	2 cut(s)	105, 787
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	235, 590
BccI	CCATC	4 cut(s)	126, 239, 862, 1013
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	2 cut(s)	798, 1095
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	72, 948
BfmI	CTRYAG	1 cut(s)	576
BfrI	CTTAAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	1055
BisI	GCNGC	3 cut(s)	6, 224, 579
BlnI	CCTAGG	1 cut(s)	71
BlsI	GCNGC	3 cut(s)	7, 225, 580
Bme1390I	CCNGG	2 cut(s)	798, 1095
Bme18I	GGWCC	3 cut(s)	90, 794, 1067
BmeRI	GACNNNNNGTC	1 cut(s)	826
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	4 cut(s)	90, 311, 794, 1067
BmiI	GGNNCC	2 cut(s)	91, 251
BmrFI	CCNGG	2 cut(s)	798, 1095
BmsI	GCATC	2 cut(s)	145, 1148
BpmI	CTGGAG	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	2 cut(s)	300, 1034
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	71, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 482
Bse1I	ACTGG	3 cut(s)	427, 631, 768
Bse3DI	GCAATG	3 cut(s)	285, 840, 1125
BseBI	CCWGG	2 cut(s)	798, 1095
BseDI	CCNNGG	2 cut(s)	71, 177
BseGI	GGATG	1 cut(s)	1024
BseLI	CCNNNNNNNGG	2 cut(s)	259, 482
BseMI	GCAATG	3 cut(s)	285, 840, 1125
BseMII	CTCAG	4 cut(s)	62, 609, 804, 983
BseNI	ACTGG	3 cut(s)	427, 631, 768
BseRI	GAGGAG	1 cut(s)	1009
BseXI	GCAGC	2 cut(s)	235, 590
BsgI	GTGCAG	1 cut(s)	1064
BshFI	GGCC	2 cut(s)	313, 391
BsiHKAI	GWGCWC	2 cut(s)	105, 787
BsiHKCI	CYCGRG	1 cut(s)	253
BslFI	GGGAC	3 cut(s)	195, 503, 833
BslI	CCNNNNNNNGG	2 cut(s)	259, 482
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	3 cut(s)	195, 503, 833
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	313, 391
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	4 cut(s)	105, 169, 787, 920
Bsp143I	GATC	3 cut(s)	186, 235, 1167
BspANI	GGCC	2 cut(s)	313, 391
BspCNI	CTCAG	4 cut(s)	61, 610, 805, 984
BspLI	GGNNCC	2 cut(s)	91, 251
BspMAI	CTGCAG	1 cut(s)	580
BspMI	ACCTGC	1 cut(s)	1055
BspTI	CTTAAG	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	3 cut(s)	285, 840, 1125
BsrI	ACTGG	3 cut(s)	427, 631, 768
BssECI	CCNNGG	2 cut(s)	71, 177
BssMI	GATC	3 cut(s)	186, 235, 1167
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	798, 1095
Bst4CI	ACNGT	4 cut(s)	143, 640, 927, 1213
Bst6I	CTCTTC	1 cut(s)	969
BstAFI	CTTAAG	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	962
BstDEI	CTNAG	4 cut(s)	48, 618, 813, 992
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	1024
BstKTI	GATC	3 cut(s)	189, 238, 1170
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	186, 235, 1167
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 173, 1136
BstNI	CCWGG	2 cut(s)	798, 1095
BstSCI	CCNGG	2 cut(s)	796, 1093
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	235, 590
BsuRI	GGCC	2 cut(s)	313, 391
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	1024
BtsIMutI	CAGTG	2 cut(s)	420, 761
BveI	ACCTGC	1 cut(s)	1055
Cac8I	GCNNGC	1 cut(s)	962
Cfr13I	GGNCC	4 cut(s)	90, 311, 794, 1067
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CviAII	CATG	2 cut(s)	535, 907
DdeI	CTNAG	4 cut(s)	48, 618, 813, 992
DpnI	GATC	3 cut(s)	188, 237, 1169
DpnII	GATC	3 cut(s)	186, 235, 1167
DriI	GACNNNNNGTC	1 cut(s)	826
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	969
Eam1105I	GACNNNNNGTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	969
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	2 cut(s)	169, 920
Eco31I	GGTCTC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	3 cut(s)	90, 794, 1067
Eco57I	CTGAAG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	253
EcoO109I	RGGNCCY	2 cut(s)	794, 1067
EcoRII	CCWGG	2 cut(s)	796, 1093
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	2 cut(s)	169, 920
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	538, 910
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	3 cut(s)	195, 503, 833
FatI	CATG	2 cut(s)	534, 906
FbaI	TGATCA	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	6, 224, 579
FokI	GGATG	1 cut(s)	1031
FriOI	GRGCYC	2 cut(s)	169, 920
Fsp4HI	GCNGC	3 cut(s)	6, 224, 579
FspBI	CTAG	2 cut(s)	72, 948
GluI	GCNGC	3 cut(s)	6, 224, 579
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	2 cut(s)	313, 391
Hin1II	CATG	2 cut(s)	538, 910
HinfI	GANTC	5 cut(s)	160, 209, 287, 558, 977
HphI	GGTGA	3 cut(s)	734, 812, 1070
Hpy166II	GTNNAC	1 cut(s)	1192
Hpy188I	TCNGA	2 cut(s)	505, 993
Hpy188III	TCNNGA	6 cut(s)	233, 239, 253, 545, 1181, 1227
Hpy8I	GTNNAC	1 cut(s)	1192
HpyAV	CCTTC	2 cut(s)	925, 1196
HpyCH4III	ACNGT	4 cut(s)	143, 640, 927, 1213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 173, 1136
HpyF3I	CTNAG	4 cut(s)	48, 618, 813, 992
Hsp92II	CATG	2 cut(s)	538, 910
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	3 cut(s)	186, 235, 1167
LmnI	GCTCC	4 cut(s)	100, 220, 433, 1136
Lsp1109I	GCAGC	2 cut(s)	235, 590
LweI	GCATC	2 cut(s)	145, 1148
MaeI	CTAG	2 cut(s)	72, 948
MaeIII	GTNAC	3 cut(s)	415, 685, 1216
MalI	GATC	3 cut(s)	188, 237, 1169
MboI	GATC	3 cut(s)	186, 235, 1167
MboII	GAAGA	5 cut(s)	113, 254, 587, 679, 986
MfeI	CAATTG	1 cut(s)	361
MhlI	GDGCHC	4 cut(s)	105, 169, 787, 920
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	3 cut(s)	361, 751, 770
MluNI	TGGCCA	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	218, 986
MmeI	TCCRAC	1 cut(s)	596
Mox20I	TGGCCA	1 cut(s)	391
MroXI	GAANNNNTTC	2 cut(s)	81, 1188
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	2 cut(s)	453, 522
MslI	CAYNNNNRTG	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	391
MspA1I	CMGCKG	1 cut(s)	1145
MspCI	CTTAAG	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	798, 1095
MunI	CAATTG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	2 cut(s)	798, 1095
MwoI	GCNNNNNNNGC	3 cut(s)	164, 173, 1136
NdeII	GATC	3 cut(s)	186, 235, 1167
NlaIII	CATG	2 cut(s)	538, 910
NlaIV	GGNNCC	2 cut(s)	91, 251
NmuCI	GTSAC	1 cut(s)	685
PctI	GAATGC	1 cut(s)	512
PdmI	GAANNNNTTC	2 cut(s)	81, 1188
PfeI	GAWTC	3 cut(s)	160, 287, 558
PkrI	GCNGC	3 cut(s)	7, 225, 580
PleI	GAGTC	2 cut(s)	217, 985
PpsI	GAGTC	2 cut(s)	217, 985
PpuMI	RGGWCCY	2 cut(s)	794, 1067
PsiI	TTATAA	1 cut(s)	809
Psp5II	RGGWCCY	2 cut(s)	794, 1067
Psp6I	CCWGG	2 cut(s)	796, 1093
PspGI	CCWGG	2 cut(s)	796, 1093
PspN4I	GGNNCC	2 cut(s)	91, 251
PspPI	GGNCC	4 cut(s)	90, 311, 794, 1067
PspPPI	RGGWCCY	2 cut(s)	794, 1067
PstI	CTGCAG	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	1145
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	453, 522
SatI	GCNGC	3 cut(s)	6, 224, 579
Sau3AI	GATC	3 cut(s)	186, 235, 1167
Sau96I	GGNCC	4 cut(s)	90, 311, 794, 1067
SchI	GAGTC	2 cut(s)	218, 986
ScrFI	CCNGG	2 cut(s)	798, 1095
SduI	GDGCHC	4 cut(s)	105, 169, 787, 920
SfaNI	GCATC	2 cut(s)	145, 1148
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	3 cut(s)	90, 794, 1067
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	3 cut(s)	315, 452, 1013
SmoI	CTYRAG	3 cut(s)	315, 452, 1013
Sse9I	AATT	3 cut(s)	361, 751, 770
SspMI	CTAG	2 cut(s)	72, 948
StyD4I	CCNGG	2 cut(s)	796, 1093
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	4 cut(s)	143, 640, 927, 1213
TaqI	TCGA	2 cut(s)	153, 163
TasI	AATT	3 cut(s)	361, 751, 770
TfiI	GAWTC	3 cut(s)	160, 287, 558
Tru1I	TTAA	2 cut(s)	453, 522
Tru9I	TTAA	2 cut(s)	453, 522
TscAI	CASTG	2 cut(s)	427, 768
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	3 cut(s)	5, 223, 578
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	2 cut(s)	623, 690
TspGWI	ACGGA	1 cut(s)	1149
TspRI	CASTG	2 cut(s)	427, 768
Vha464I	CTTAAG	1 cut(s)	452
VpaK11BI	GGWCC	3 cut(s)	90, 794, 1067
XapI	RAATTY	1 cut(s)	770
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 427
XmaJI	CCTAGG	1 cut(s)	71
XmnI	GAANNNNTTC	2 cut(s)	81, 1188
XspI	CTAG	2 cut(s)	72, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.